Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:53:44 (2635481): wrapper (7.7.26015): starting
23:53:44 (2635481): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 23:53:44] Arguments: --nthreads 8
[2025-07-27 23:53:44] Threads: 8
[2025-07-27 23:53:44] Checking for CVMFS
[2025-07-27 23:53:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:53:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:53:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:53:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:53:45] 2.13.1.0 5097 14903 196460 148834 0 196 24535378 40960000 9773 16776704 0 47813117 99.936 17677093 43558 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 23:53:45] CVMFS is ok
[2025-07-27 23:53:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:53:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:53:45] Further information can be found at the LHC@home message board.
[2025-07-27 23:53:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:53:45] Checking for apptainer binary...
[2025-07-27 23:53:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:53:45] Running /usr/bin/apptainer --version
[2025-07-27 23:53:45] apptainer version 1.4.1-1.el9
[2025-07-27 23:53:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:53:45] c-212-6.aglt2.org
[2025-07-27 23:53:45] apptainer works
[2025-07-27 23:53:45] Set ATHENA_PROC_NUMBER=8
[2025-07-27 23:53:45] Set ATHENA_CORE_NUMBER=8
[2025-07-27 23:53:45] Starting ATLAS job with PandaID=6748421411
[2025-07-27 23:53:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:02:06]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:02:06]  lfn=log.45743349._056192.job.log.tgz.1
[2025-07-28 01:02:06]  mtime=0
[2025-07-28 01:02:06]  protocol_id=None
[2025-07-28 01:02:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 01:02:06]  replicas=None
[2025-07-28 01:02:06]  scope=mc23_13p6TeV
[2025-07-28 01:02:06]  status=None
[2025-07-28 01:02:06]  status_code=0
[2025-07-28 01:02:06]  storage_token=
[2025-07-28 01:02:06]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6748421411/log.45743349._056192.job.log.tgz.1
[2025-07-28 01:02:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/36/d3/log.45743349._056192.job.log.tgz.1
[2025-07-28 01:02:06]  workdir=None
[2025-07-28 01:02:06] ]
[2025-07-28 01:02:06] 2025-07-28 05:01:26,515 | INFO     | transferring file log.45743349._056192.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6748421411/log.45743349._056192.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 01:02:06] 2025-07-28 05:01:26,515 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6748421411/log.45743349._056192.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._056192.job
[2025-07-28 01:02:06] 2025-07-28 05:01:26,531 | INFO     | adding to output.list: log.45743349._056192.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/36/d3/log.45743349._056192.job.log.tg
[2025-07-28 01:02:06] 2025-07-28 05:01:26,532 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 01:02:06] 2025-07-28 05:01:26,532 | INFO     | summary of transferred files:
[2025-07-28 01:02:06] 2025-07-28 05:01:26,532 | INFO     |  -- lfn=log.45743349._056192.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 01:02:06] 2025-07-28 05:01:26,532 | INFO     | stage-out finished correctly
[2025-07-28 01:02:06] 2025-07-28 05:01:27,856 | INFO     | monitor loop #301: job 0:6748421411 is in state 'finished'
[2025-07-28 01:02:06] 2025-07-28 05:01:27,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:02:06] 2025-07-28 05:01:28,402 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 01:02:06] 2025-07-28 05:01:30,127 | INFO     | job 6748421411 has state=finished
[2025-07-28 01:02:06] 2025-07-28 05:01:30,128 | INFO     | preparing for final server update for job 6748421411 in state='finished'
[2025-07-28 01:02:06] 2025-07-28 05:01:30,128 | INFO     | this job has now completed (state=finished)
[2025-07-28 01:02:06] 2025-07-28 05:01:30,128 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 01:02:06] 2025-07-28 05:01:30,128 | INFO     | log transfer has been attempted: DONE
[2025-07-28 01:02:06] 2025-07-28 05:01:30,128 | INFO     | job 6748421411 has finished - writing final server update
[2025-07-28 01:02:06] 2025-07-28 05:01:30,128 | INFO     | total number of processed events: 400 (read)
[2025-07-28 01:02:06] 2025-07-28 05:01:30,129 | INFO     | executing command: lscpu
[2025-07-28 01:02:06] 2025-07-28 05:01:30,180 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 01:02:06] 2025-07-28 05:01:30,359 | INFO     | monitor loop #302: job 0:6748421411 is in state 'finished'
[2025-07-28 01:02:06] 2025-07-28 05:01:30,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:02:06] 2025-07-28 05:01:32,862 | INFO     | monitor loop #303: job 0:6748421411 is in state 'finished'
[2025-07-28 01:02:06] 2025-07-28 05:01:32,863 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:02:06] 2025-07-28 05:01:33,015 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 01:02:06] 2025-07-28 05:01:33,018 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3267.7159166666643
[2025-07-28 01:02:06] 2025-07-28 05:01:33,026 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6748421411/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:02:06] 2025-07-28 05:01:33,027 | INFO     | extracted standard info from prmon json
[2025-07-28 01:02:06] 2025-07-28 05:01:33,027 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:02:06] 2025-07-28 05:01:33,027 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:02:06] 2025-07-28 05:01:33,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:02:06] 2025-07-28 05:01:33,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:02:06] 2025-07-28 05:01:33,028 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:02:06] 2025-07-28 05:01:33,028 | INFO     | sum of square deviations: 63666310.0
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | sum of deviations: 230288969.00000006
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | mean x: 1753676941.0
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | mean y: 2526667.338983051
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | -- intersect: -6340741141.050791
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | intersect: -6340741141.050791
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | chi2: 0.018010518178647347
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | -- intersect: -6340741141.050791
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | current memory leak: 3.62 B/s (using 59 data points, chi2=0.02)
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | could have reported an average CPU frequency of 3337 MHz (6 samples)
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | ..............................
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | . Timing measurements:
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | . get job = 0 s
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | . initial setup = 2 s
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | . payload setup = 7 s
[2025-07-28 01:02:06] 2025-07-28 05:01:33,029 | INFO     | . stage-in = 0 s
[2025-07-28 01:02:06] 2025-07-28 05:01:33,030 | INFO     | . payload execution = 4021 s
[2025-07-28 01:02:06] 2025-07-28 05:01:33,030 | INFO     | . stage-out = 0 s
[2025-07-28 01:02:06] 2025-07-28 05:01:33,030 | INFO     | . log creation = 0 s
[2025-07-28 01:02:06] 2025-07-28 05:01:33,030 | INFO     | ..............................
[2025-07-28 01:02:06] 2025-07-28 05:01:33,555 | INFO     | 
[2025-07-28 01:02:06] 2025-07-28 05:01:33,555 | INFO     | job summary report
[2025-07-28 01:02:06] 2025-07-28 05:01:33,555 | INFO     | --------------------------------------------------
[2025-07-28 01:02:06] 2025-07-28 05:01:33,555 | INFO     | PanDA job id: 6748421411
[2025-07-28 01:02:06] 2025-07-28 05:01:33,555 | INFO     | task id: 45743349
[2025-07-28 01:02:06] 2025-07-28 05:01:33,555 | INFO     | errors: (none)
[2025-07-28 01:02:06] 2025-07-28 05:01:33,555 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:02:06] 2025-07-28 05:01:33,555 | INFO     | pilot state: finished 
[2025-07-28 01:02:06] 2025-07-28 05:01:33,555 | INFO     | transexitcode: 0
[2025-07-28 01:02:06] 2025-07-28 05:01:33,555 | INFO     | exeerrorcode: 0
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | exeerrordiag: 
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | exitcode: 0
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | exitmsg: OK
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | cpuconsumptiontime: 28675 s
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | nevents: 400
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | neventsw: 0
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | pid: 2646153
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | pgrp: 2646153
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | corecount: 8
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | event service: False
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | sizes: {0: 2397424, 6: 2397686, 11: 2397714, 4032: 2423524, 4033: 2432522, 4035: 2432578, 4040: 2432900}
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | --------------------------------------------------
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | 
[2025-07-28 01:02:06] 2025-07-28 05:01:33,556 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-28 01:02:06] 2025-07-28 05:01:33,571 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:02:06] 2025-07-28 05:01:33,572 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,573 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:02:06] 2025-07-28 05:01:33,573 | INFO     | job 6748421411 has completed (purged errors)
[2025-07-28 01:02:06] 2025-07-28 05:01:33,573 | INFO     | overall cleanup function is called
[2025-07-28 01:02:06] 2025-07-28 05:01:34,580 | INFO     | --- collectZombieJob: --- 10, [2646153]
[2025-07-28 01:02:06] 2025-07-28 05:01:34,580 | INFO     | zombie collector waiting for pid 2646153
[2025-07-28 01:02:06] 2025-07-28 05:01:34,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:02:06] 2025-07-28 05:01:34,580 | INFO     | collected zombie processes
[2025-07-28 01:02:06] 2025-07-28 05:01:34,580 | INFO     | will attempt to kill all subprocesses of pid=2646153
[2025-07-28 01:02:06] 2025-07-28 05:01:34,806 | INFO     | process IDs to be killed: [2646153] (in reverse order)
[2025-07-28 01:02:06] 2025-07-28 05:01:34,876 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:02:06] 2025-07-28 05:01:34,876 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:02:06] 2025-07-28 05:01:34,885 | INFO     | did not find any defunct processes belonging to 2646153
[2025-07-28 01:02:06] 2025-07-28 05:01:34,890 | INFO     | did not find any defunct processes belonging to 2646153
[2025-07-28 01:02:06] 2025-07-28 05:01:34,890 | INFO     | ready for new job
[2025-07-28 01:02:06] 2025-07-28 05:01:34,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:02:06] 2025-07-28 05:01:34,892 | INFO     | ***************************************
[2025-07-28 01:02:06] 2025-07-28 05:01:34,892 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:02:06] 2025-07-28 05:01:34,892 | INFO     | ***************************************
[2025-07-28 01:02:06] 2025-07-28 05:01:34,892 | INFO     | 
[2025-07-28 01:02:06] 2025-07-28 05:01:34,896 | INFO     | architecture information:
[2025-07-28 01:02:06] 2025-07-28 05:01:34,896 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:02:06] 2025-07-28 05:01:34,909 | INFO     | cat /etc/os-release:
[2025-07-28 01:02:06] NAME="CentOS Linux"
[2025-07-28 01:02:06] VERSION="7 (Core)"
[2025-07-28 01:02:06] ID="centos"
[2025-07-28 01:02:06] ID_LIKE="rhel fedora"
[2025-07-28 01:02:06] VERSION_ID="7"
[2025-07-28 01:02:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:02:06] ANSI_COLOR="0;31"
[2025-07-28 01:02:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:02:06] HOME_URL="https://www.centos.org/"
[2025-07-28 01:02:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:02:06] 
[2025-07-28 01:02:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:02:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:02:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:02:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:02:06] 
[2025-07-28 01:02:06] 2025-07-28 05:01:34,909 | INFO     | ***************************************
[2025-07-28 01:02:06] 2025-07-28 05:01:35,412 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-28 01:02:06] 2025-07-28 05:01:35,428 | INFO     | sufficient remaining disk space (127975555072 B)
[2025-07-28 01:02:06] 2025-07-28 05:01:35,428 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:02:06] 2025-07-28 05:01:35,429 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:02:06] 2025-07-28 05:01:35,429 | INFO     | update_server=False
[2025-07-28 01:02:06] 2025-07-28 05:01:35,429 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:02:06] 2025-07-28 05:01:35,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:02:06] 2025-07-28 05:01:35,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:02:06] 2025-07-28 05:01:35,791 | INFO     | all data control threads have been joined
[2025-07-28 01:02:06] 2025-07-28 05:01:35,998 | INFO     | all job control threads have been joined
[2025-07-28 01:02:06] 2025-07-28 05:01:36,371 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:02:06] 2025-07-28 05:01:36,371 | INFO     | aborting loop
[2025-07-28 01:02:06] 2025-07-28 05:01:36,434 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:36,460 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:36,649 | INFO     | all payload control threads have been joined
[2025-07-28 01:02:06] 2025-07-28 05:01:36,796 | INFO     | [data] control thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:36,849 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:37,003 | INFO     | [job] control thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:37,376 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:37,407 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:37,434 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:37,596 | INFO     | [job] validate thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:37,614 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:37,654 | INFO     | [payload] control thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:37,777 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:37,862 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:38,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:02:06] 2025-07-28 05:01:39,089 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:39,434 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:46,118 | INFO     | job.realtimelogging is not enabled
[2025-07-28 01:02:06] 2025-07-28 05:01:47,123 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:02:06] 2025-07-28 05:01:48,779 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139924440340288)>', '<ExcThread(monitor, started 139924086957824)>']
[2025-07-28 01:02:06] 2025-07-28 05:01:53,805 | INFO     | all workflow threads have been joined
[2025-07-28 01:02:06] 2025-07-28 05:01:53,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:02:06] 2025-07-28 05:01:53,805 | INFO     | traces error code: 0
[2025-07-28 01:02:06] 2025-07-28 05:01:53,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:02:06] 2025-07-28 05:02:06,662 | INFO     | PID=2639697 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:02:06] 2025-07-28 05:02:06,663 | INFO     | .. there are 9 such processes running
[2025-07-28 01:02:06] 2025-07-28 05:02:06,663 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:02:06] 2025-07-28 05:02:06,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:02:06] 2025-07-28 05:02:06,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:02:06] 2025-07-28 05:02:06,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:02:06] 2025-07-28 05:02:06,663 | INFO     | [monitor] control thread has ended
[2025-07-28 01:02:06] 2025-07-28 05:02:06,751 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:02:06] 2025-07-28 05:02:06,753 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:02:06] 2025-07-28 05:02:06,756 [wrapper] pilotpid: 2639697
[2025-07-28 01:02:06] 2025-07-28 05:02:06,758 [wrapper] Pilot exit status: 0
[2025-07-28 01:02:06] 2025-07-28 05:02:06,765 [wrapper] pandaids: 6748421411
[2025-07-28 01:02:06] 2025-07-28 05:02:06,815 [wrapper] cleanup supervisor_pilot 2804122 2639698
[2025-07-28 01:02:06] 2025-07-28 05:02:06,818 [wrapper] Test setup, not cleaning
[2025-07-28 01:02:06] 2025-07-28 05:02:06,820 [wrapper] apfmon messages muted
[2025-07-28 01:02:06] 2025-07-28 05:02:06,822 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:02:06] 2025-07-28 05:02:06,825 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:02:06]  *** Error codes and diagnostics ***
[2025-07-28 01:02:06]     "exeErrorCode": 0,
[2025-07-28 01:02:06]     "exeErrorDiag": "",
[2025-07-28 01:02:06]     "pilotErrorCode": 0,
[2025-07-28 01:02:06]     "pilotErrorDiag": "",
[2025-07-28 01:02:06]  *** Listing of results directory ***
[2025-07-28 01:02:06] total 358264
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 23:07 pilot3.tar.gz
[2025-07-28 01:02:06] -rwx------. 1 boincer umatlas     36292 Jul 27 23:44 runpilot2-wrapper.sh
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 23:44 queuedata.json
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:02:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:53 run_atlas
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:53 job.xml
[2025-07-28 01:02:06] -rw-r--r--. 2 boincer umatlas 147637946 Jul 27 23:53 EVNT.45743347._002794.pool.root.1
[2025-07-28 01:02:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:53 start_atlas.sh
[2025-07-28 01:02:06] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:53 shared
[2025-07-28 01:02:06] -rw-r--r--. 2 boincer umatlas    542901 Jul 27 23:53 input.tar.gz
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:53 boinc_lockfile
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 23:53 pandaJob.out
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas    980117 Jul 27 23:53 agis_schedconf.cvmfs.json
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:53 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:02:06] drwx------. 4 boincer umatlas      4096 Jul 27 23:53 pilot3
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas      6946 Jul 28 00:58 init_data.xml
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas 213913688 Jul 28 01:01 HITS.45743349._056192.pool.root.1
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas       529 Jul 28 01:01 boinc_task_state.xml
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas        95 Jul 28 01:01 pilot_heartbeat.json
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas      1025 Jul 28 01:01 memory_monitor_summary.json
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas    304869 Jul 28 01:01 log.45743349._056192.job.log.tgz.1
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas      7758 Jul 28 01:01 heartbeat.json
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 01:02 boinc_mmap_file
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas        27 Jul 28 01:02 wrapper_checkpoint.txt
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas       822 Jul 28 01:02 pilotlog.txt
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas    408649 Jul 28 01:02 log.45743349._056192.job.log.1
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas       357 Jul 28 01:02 output.list
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas       620 Jul 28 01:02 runtime_log
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas    737280 Jul 28 01:02 result.tar.gz
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas      8655 Jul 28 01:02 runtime_log.err
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas       650 Jul 28 01:02 8zSMDmVyT07n9Rq4apOajLDm4fhM0noT9bVof3QYDmRC3KDmR2OWSo.diag
[2025-07-28 01:02:06] -rw-r--r--. 1 boincer umatlas     21655 Jul 28 01:02 stderr.txt
[2025-07-28 01:02:06] HITS file was successfully produced:
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas 213913688 Jul 28 01:01 shared/HITS.pool.root.1
[2025-07-28 01:02:06]  *** Contents of shared directory: ***
[2025-07-28 01:02:06] total 354360
[2025-07-28 01:02:06] -rw-r--r--. 2 boincer umatlas 147637946 Jul 27 23:53 ATLAS.root_0
[2025-07-28 01:02:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:53 start_atlas.sh
[2025-07-28 01:02:06] -rw-r--r--. 2 boincer umatlas    542901 Jul 27 23:53 input.tar.gz
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas 213913688 Jul 28 01:01 HITS.pool.root.1
[2025-07-28 01:02:06] -rw-------. 1 boincer umatlas    737280 Jul 28 01:02 result.tar.gz
01:02:08 (2635481): run_atlas exited; CPU time 28763.154515
01:02:08 (2635481): called boinc_finish(0)

</stderr_txt>
]]>

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