Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:28:46 (3610612): wrapper (7.7.26015): starting
11:28:46 (3610612): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 11:28:46] Arguments: --nthreads 12
[2025-07-28 11:28:46] Threads: 12
[2025-07-28 11:28:46] Checking for CVMFS
[2025-07-28 11:28:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 11:28:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 11:28:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 11:28:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 11:28:46] 2.13.1.0 95439 9935 105212 148843 3 57 2748440 4097025 0 130560 0 8294885 99.990 371258 6571 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-07-28 11:28:46] CVMFS is ok
[2025-07-28 11:28:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 11:28:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 11:28:46] Further information can be found at the LHC@home message board.
[2025-07-28 11:28:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 11:28:46] Checking for apptainer binary...
[2025-07-28 11:28:46] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-07-28 11:28:46] apptainer is not installed, using version from CVMFS
[2025-07-28 11:28:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 11:28:47] pckelar5.cern.ch
[2025-07-28 11:28:47] apptainer works
[2025-07-28 11:28:47] Set ATHENA_PROC_NUMBER=12
[2025-07-28 11:28:47] Set ATHENA_CORE_NUMBER=12
[2025-07-28 11:28:47] Starting ATLAS job with PandaID=6748423574
[2025-07-28 11:28:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 12:44:36]  *** The last 200 lines of the pilot log: ***
[2025-07-28 12:44:36]  guid=4e9798d6-efb7-49e5-ba37-3e17d6f53f28
[2025-07-28 12:44:36]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-28 12:44:36]  is_altstaged=None
[2025-07-28 12:44:36]  is_tar=False
[2025-07-28 12:44:36]  lfn=log.45743349._056197.job.log.tgz.1
[2025-07-28 12:44:36]  mtime=0
[2025-07-28 12:44:36]  protocol_id=None
[2025-07-28 12:44:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 12:44:36]  replicas=None
[2025-07-28 12:44:36]  scope=mc23_13p6TeV
[2025-07-28 12:44:36]  status=None
[2025-07-28 12:44:36]  status_code=0
[2025-07-28 12:44:36]  storage_token=
[2025-07-28 12:44:36]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6748423574/log.45743349._056197.job.log.tgz.1
[2025-07-28 12:44:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/66/log.45743349._056197.job.log.tgz.1
[2025-07-28 12:44:36]  workdir=None
[2025-07-28 12:44:36] ]
[2025-07-28 12:44:36] 2025-07-28 10:43:58,626 | INFO     | transferring file log.45743349._056197.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6748423574/log.45743349._056197.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 12:44:36] 2025-07-28 10:43:58,626 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6748423574/log.45743349._056197.job.log.tgz.1 /var/lib/boinc/slots/0/log.45743349._056197.job
[2025-07-28 12:44:36] 2025-07-28 10:43:58,639 | INFO     | adding to output.list: log.45743349._056197.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/66/log.45743349._056197.job.log.tg
[2025-07-28 12:44:36] 2025-07-28 10:43:58,640 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 12:44:36] 2025-07-28 10:43:58,640 | INFO     | summary of transferred files:
[2025-07-28 12:44:36] 2025-07-28 10:43:58,640 | INFO     |  -- lfn=log.45743349._056197.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 12:44:36] 2025-07-28 10:43:58,641 | INFO     | stage-out finished correctly
[2025-07-28 12:44:36] 2025-07-28 10:43:58,743 | INFO     | number of running child processes to parent process 3621412: 1
[2025-07-28 12:44:36] 2025-07-28 10:43:58,743 | INFO     | maximum number of monitored processes: 6
[2025-07-28 12:44:36] 2025-07-28 10:43:59,350 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 12:44:36] 2025-07-28 10:43:59,416 | INFO     | job 6748423574 has state=finished
[2025-07-28 12:44:36] 2025-07-28 10:43:59,417 | INFO     | preparing for final server update for job 6748423574 in state='finished'
[2025-07-28 12:44:36] 2025-07-28 10:43:59,417 | INFO     | this job has now completed (state=finished)
[2025-07-28 12:44:36] 2025-07-28 10:43:59,417 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 12:44:36] 2025-07-28 10:43:59,417 | INFO     | log transfer has been attempted: DONE
[2025-07-28 12:44:36] 2025-07-28 10:43:59,417 | INFO     | job 6748423574 has finished - writing final server update
[2025-07-28 12:44:36] 2025-07-28 10:43:59,417 | INFO     | total number of processed events: 400 (read)
[2025-07-28 12:44:36] 2025-07-28 10:43:59,419 | INFO     | executing command: lscpu
[2025-07-28 12:44:36] 2025-07-28 10:43:59,439 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 12:44:36] 2025-07-28 10:44:01,246 | INFO     | monitor loop #337: job 0:6748423574 is in state 'finished'
[2025-07-28 12:44:36] 2025-07-28 10:44:01,246 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:44:36] 2025-07-28 10:44:03,589 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 12:44:36] 2025-07-28 10:44:03,591 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2549.2461666666663
[2025-07-28 12:44:36] 2025-07-28 10:44:03,592 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6748423574/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 12:44:36] 2025-07-28 10:44:03,593 | INFO     | extracted standard info from prmon json
[2025-07-28 12:44:36] 2025-07-28 10:44:03,593 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 12:44:36] 2025-07-28 10:44:03,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 12:44:36] 2025-07-28 10:44:03,593 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 12:44:36] 2025-07-28 10:44:03,593 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 12:44:36] 2025-07-28 10:44:03,595 | INFO     | fitting pss+swap vs Time
[2025-07-28 12:44:36] 2025-07-28 10:44:03,595 | INFO     | sum of square deviations: 93240818.0
[2025-07-28 12:44:36] 2025-07-28 10:44:03,595 | INFO     | sum of deviations: -10896287748.000002
[2025-07-28 12:44:36] 2025-07-28 10:44:03,595 | INFO     | mean x: 1753697274.0
[2025-07-28 12:44:36] 2025-07-28 10:44:03,595 | INFO     | mean y: 2932459.119402985
[2025-07-28 12:44:36] 2025-07-28 10:44:03,596 | INFO     | -- intersect: 204943113489.99802
[2025-07-28 12:44:36] 2025-07-28 10:44:03,596 | INFO     | intersect: 204943113489.99802
[2025-07-28 12:44:36] 2025-07-28 10:44:03,596 | INFO     | chi2: 0.16272415512840635
[2025-07-28 12:44:36] 2025-07-28 10:44:03,596 | INFO     | -- intersect: 204943113489.99802
[2025-07-28 12:44:36] 2025-07-28 10:44:03,596 | INFO     | current memory leak: -116.86 B/s (using 67 data points, chi2=0.16)
[2025-07-28 12:44:36] 2025-07-28 10:44:03,596 | INFO     | could have reported an average CPU frequency of 2534 MHz (6 samples)
[2025-07-28 12:44:36] 2025-07-28 10:44:03,596 | INFO     | ..............................
[2025-07-28 12:44:36] 2025-07-28 10:44:03,597 | INFO     | . Timing measurements:
[2025-07-28 12:44:36] 2025-07-28 10:44:03,597 | INFO     | . get job = 0 s
[2025-07-28 12:44:36] 2025-07-28 10:44:03,597 | INFO     | . initial setup = 1 s
[2025-07-28 12:44:36] 2025-07-28 10:44:03,597 | INFO     | . payload setup = 5 s
[2025-07-28 12:44:36] 2025-07-28 10:44:03,597 | INFO     | . stage-in = 0 s
[2025-07-28 12:44:36] 2025-07-28 10:44:03,597 | INFO     | . payload execution = 4481 s
[2025-07-28 12:44:36] 2025-07-28 10:44:03,597 | INFO     | . stage-out = 0 s
[2025-07-28 12:44:36] 2025-07-28 10:44:03,597 | INFO     | . log creation = 0 s
[2025-07-28 12:44:36] 2025-07-28 10:44:03,597 | INFO     | ..............................
[2025-07-28 12:44:36] 2025-07-28 10:44:03,665 | INFO     | 
[2025-07-28 12:44:36] 2025-07-28 10:44:03,666 | INFO     | job summary report
[2025-07-28 12:44:36] 2025-07-28 10:44:03,666 | INFO     | --------------------------------------------------
[2025-07-28 12:44:36] 2025-07-28 10:44:03,666 | INFO     | PanDA job id: 6748423574
[2025-07-28 12:44:36] 2025-07-28 10:44:03,666 | INFO     | task id: 45743349
[2025-07-28 12:44:36] 2025-07-28 10:44:03,666 | INFO     | errors: (none)
[2025-07-28 12:44:36] 2025-07-28 10:44:03,666 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 12:44:36] 2025-07-28 10:44:03,666 | INFO     | pilot state: finished 
[2025-07-28 12:44:36] 2025-07-28 10:44:03,666 | INFO     | transexitcode: 0
[2025-07-28 12:44:36] 2025-07-28 10:44:03,666 | INFO     | exeerrorcode: 0
[2025-07-28 12:44:36] 2025-07-28 10:44:03,666 | INFO     | exeerrordiag: 
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | exitcode: 0
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | exitmsg: OK
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | cpuconsumptiontime: 47733 s
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | nevents: 400
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | neventsw: 0
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | pid: 3621412
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | pgrp: 3621412
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | corecount: 12
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | event service: False
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | sizes: {0: 2397418, 3: 2397680, 11: 2397708, 4491: 2432887, 4492: 2432887, 4496: 2433081}
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | --------------------------------------------------
[2025-07-28 12:44:36] 2025-07-28 10:44:03,667 | INFO     | 
[2025-07-28 12:44:36] 2025-07-28 10:44:03,668 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-28 12:44:36] 2025-07-28 10:44:03,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,687 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,688 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,688 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,688 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,688 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 12:44:36] 2025-07-28 10:44:03,688 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,688 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 12:44:36] 2025-07-28 10:44:03,688 | INFO     | job 6748423574 has completed (purged errors)
[2025-07-28 12:44:36] 2025-07-28 10:44:03,688 | INFO     | overall cleanup function is called
[2025-07-28 12:44:36] 2025-07-28 10:44:04,695 | INFO     | --- collectZombieJob: --- 10, [3621412]
[2025-07-28 12:44:36] 2025-07-28 10:44:04,695 | INFO     | zombie collector waiting for pid 3621412
[2025-07-28 12:44:36] 2025-07-28 10:44:04,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 12:44:36] 2025-07-28 10:44:04,695 | INFO     | collected zombie processes
[2025-07-28 12:44:36] 2025-07-28 10:44:04,695 | INFO     | will attempt to kill all subprocesses of pid=3621412
[2025-07-28 12:44:36] 2025-07-28 10:44:04,770 | INFO     | process IDs to be killed: [3621412] (in reverse order)
[2025-07-28 12:44:36] 2025-07-28 10:44:04,805 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 12:44:36] 2025-07-28 10:44:04,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 12:44:36] 2025-07-28 10:44:04,807 | INFO     | did not find any defunct processes belonging to 3621412
[2025-07-28 12:44:36] 2025-07-28 10:44:04,809 | INFO     | did not find any defunct processes belonging to 3621412
[2025-07-28 12:44:36] 2025-07-28 10:44:04,809 | INFO     | ready for new job
[2025-07-28 12:44:36] 2025-07-28 10:44:04,809 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 12:44:36] 2025-07-28 10:44:04,810 | INFO     | ***************************************
[2025-07-28 12:44:36] 2025-07-28 10:44:04,810 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 12:44:36] 2025-07-28 10:44:04,811 | INFO     | ***************************************
[2025-07-28 12:44:36] 2025-07-28 10:44:04,811 | INFO     | 
[2025-07-28 12:44:36] 2025-07-28 10:44:04,811 | INFO     | architecture information:
[2025-07-28 12:44:36] 2025-07-28 10:44:04,811 | INFO     | executing command: cat /etc/os-release
[2025-07-28 12:44:36] 2025-07-28 10:44:04,823 | INFO     | cat /etc/os-release:
[2025-07-28 12:44:36] NAME="CentOS Linux"
[2025-07-28 12:44:36] VERSION="7 (Core)"
[2025-07-28 12:44:36] ID="centos"
[2025-07-28 12:44:36] ID_LIKE="rhel fedora"
[2025-07-28 12:44:36] VERSION_ID="7"
[2025-07-28 12:44:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 12:44:36] ANSI_COLOR="0;31"
[2025-07-28 12:44:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 12:44:36] HOME_URL="https://www.centos.org/"
[2025-07-28 12:44:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 12:44:36] 
[2025-07-28 12:44:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 12:44:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 12:44:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 12:44:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 12:44:36] 
[2025-07-28 12:44:36] 2025-07-28 10:44:04,823 | INFO     | ***************************************
[2025-07-28 12:44:36] 2025-07-28 10:44:05,326 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-28 12:44:36] 2025-07-28 10:44:05,339 | INFO     | sufficient remaining disk space (1818234978304 B)
[2025-07-28 12:44:36] 2025-07-28 10:44:05,340 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 12:44:36] 2025-07-28 10:44:05,340 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 12:44:36] 2025-07-28 10:44:05,340 | INFO     | update_server=False
[2025-07-28 12:44:36] 2025-07-28 10:44:05,340 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 12:44:36] 2025-07-28 10:44:05,340 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:44:36] 2025-07-28 10:44:05,340 | INFO     | aborting loop
[2025-07-28 12:44:36] 2025-07-28 10:44:05,341 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:44:36] 2025-07-28 10:44:05,422 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 12:44:36] 2025-07-28 10:44:05,773 | INFO     | all job control threads have been joined
[2025-07-28 12:44:36] 2025-07-28 10:44:05,893 | INFO     | all payload control threads have been joined
[2025-07-28 12:44:36] 2025-07-28 10:44:06,033 | INFO     | all data control threads have been joined
[2025-07-28 12:44:36] 2025-07-28 10:44:06,345 | INFO     | [job] retrieve thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:06,346 | INFO     | [job] job monitor thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:06,346 | INFO     | [job] queue monitor thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:06,499 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:06,638 | INFO     | [job] validate thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:06,720 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 12:44:36] 2025-07-28 10:44:06,779 | INFO     | [job] control thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:06,782 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:06,851 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:06,853 | INFO     | [data] copytool_in thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:06,899 | INFO     | [payload] control thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:07,038 | INFO     | [data] control thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:07,065 | INFO     | [payload] validate_post thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:07,148 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:07,456 | INFO     | [payload] failed_post thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:08,726 | INFO     | [data] copytool_out thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:09,428 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 12:44:36] 2025-07-28 10:44:11,207 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665922324288)>', '<ExcThread(monitor, started 140664926885632)>']
[2025-07-28 12:44:36] 2025-07-28 10:44:16,232 | INFO     | all workflow threads have been joined
[2025-07-28 12:44:36] 2025-07-28 10:44:16,232 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 12:44:36] 2025-07-28 10:44:16,233 | INFO     | traces error code: 0
[2025-07-28 12:44:36] 2025-07-28 10:44:16,233 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 12:44:36] 2025-07-28 10:44:35,855 | INFO     | PID=3614295 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 12:44:36] 2025-07-28 10:44:35,856 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 12:44:36] 2025-07-28 10:44:35,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 12:44:36] 2025-07-28 10:44:35,856 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 12:44:36] 2025-07-28 10:44:35,856 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 12:44:36] 2025-07-28 10:44:35,856 | INFO     | [monitor] control thread has ended
[2025-07-28 12:44:36] 2025-07-28 10:44:35,925 [wrapper] ==== pilot stdout END ====
[2025-07-28 12:44:36] 2025-07-28 10:44:35,928 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 12:44:36] 2025-07-28 10:44:35,931 [wrapper] pilotpid: 3614295
[2025-07-28 12:44:36] 2025-07-28 10:44:35,933 [wrapper] Pilot exit status: 0
[2025-07-28 12:44:36] 2025-07-28 10:44:35,941 [wrapper] pandaids: 6748423574
[2025-07-28 12:44:36] 2025-07-28 10:44:35,960 [wrapper] cleanup supervisor_pilot 3637313 3614296
[2025-07-28 12:44:36] 2025-07-28 10:44:35,962 [wrapper] Test setup, not cleaning
[2025-07-28 12:44:36] 2025-07-28 10:44:35,965 [wrapper] apfmon messages muted
[2025-07-28 12:44:36] 2025-07-28 10:44:35,967 [wrapper] ==== wrapper stdout END ====
[2025-07-28 12:44:36] 2025-07-28 10:44:35,968 [wrapper] ==== wrapper stderr END ====
[2025-07-28 12:44:36]  *** Error codes and diagnostics ***
[2025-07-28 12:44:36]     "exeErrorCode": 0,
[2025-07-28 12:44:36]     "exeErrorDiag": "",
[2025-07-28 12:44:36]     "pilotErrorCode": 0,
[2025-07-28 12:44:36]     "pilotErrorDiag": "",
[2025-07-28 12:44:36]  *** Listing of results directory ***
[2025-07-28 12:44:36] total 430604
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc    530466 Jul 28 05:07 pilot3.tar.gz
[2025-07-28 12:44:36] -rwx------ 1 boinc boinc     36292 Jul 28 05:51 runpilot2-wrapper.sh
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc      5112 Jul 28 05:51 queuedata.json
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc       100 Jul 28 11:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 12:44:36] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 11:28 run_atlas
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc       105 Jul 28 11:28 job.xml
[2025-07-28 12:44:36] -rw-r--r-- 2 boinc boinc 227740210 Jul 28 11:28 EVNT.45743347._002522.pool.root.1
[2025-07-28 12:44:36] -rw-r--r-- 2 boinc boinc     15095 Jul 28 11:28 start_atlas.sh
[2025-07-28 12:44:36] drwxrwx--x 2 boinc boinc        68 Jul 28 11:28 shared
[2025-07-28 12:44:36] -rw-r--r-- 2 boinc boinc    542891 Jul 28 11:28 input.tar.gz
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc      6294 Jul 28 11:28 init_data.xml
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc         0 Jul 28 11:28 boinc_lockfile
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc      2559 Jul 28 11:28 pandaJob.out
[2025-07-28 12:44:36] -rw------- 1 boinc boinc    978460 Jul 28 11:28 agis_schedconf.cvmfs.json
[2025-07-28 12:44:36] -rw------- 1 boinc boinc   1593052 Jul 28 11:28 agis_ddmendpoints.agis.ALL.json
[2025-07-28 12:44:36] drwx------ 4 boinc boinc      4096 Jul 28 11:28 pilot3
[2025-07-28 12:44:36] -rw------- 1 boinc boinc 207778106 Jul 28 12:43 HITS.45743349._056197.pool.root.1
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc       529 Jul 28 12:43 boinc_task_state.xml
[2025-07-28 12:44:36] -rw------- 1 boinc boinc        95 Jul 28 12:43 pilot_heartbeat.json
[2025-07-28 12:44:36] -rw------- 1 boinc boinc      1015 Jul 28 12:43 memory_monitor_summary.json
[2025-07-28 12:44:36] -rw------- 1 boinc boinc    344673 Jul 28 12:43 log.45743349._056197.job.log.tgz.1
[2025-07-28 12:44:36] -rw------- 1 boinc boinc      7787 Jul 28 12:44 heartbeat.json
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc      8192 Jul 28 12:44 boinc_mmap_file
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc        27 Jul 28 12:44 wrapper_checkpoint.txt
[2025-07-28 12:44:36] -rw------- 1 boinc boinc       747 Jul 28 12:44 pilotlog.txt
[2025-07-28 12:44:36] -rw------- 1 boinc boinc    435657 Jul 28 12:44 log.45743349._056197.job.log.1
[2025-07-28 12:44:36] -rw------- 1 boinc boinc       357 Jul 28 12:44 output.list
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc       620 Jul 28 12:44 runtime_log
[2025-07-28 12:44:36] -rw------- 1 boinc boinc    798720 Jul 28 12:44 result.tar.gz
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc      8684 Jul 28 12:44 runtime_log.err
[2025-07-28 12:44:36] -rw------- 1 boinc boinc       656 Jul 28 12:44 c5bLDmW4T07n9Rq4apOajLDm4fhM0noT9bVof3QYDmVC3KDm1sxZKo.diag
[2025-07-28 12:44:36] -rw-r--r-- 1 boinc boinc     21472 Jul 28 12:44 stderr.txt
[2025-07-28 12:44:36] HITS file was successfully produced:
[2025-07-28 12:44:36] -rw------- 1 boinc boinc 207778106 Jul 28 12:43 shared/HITS.pool.root.1
[2025-07-28 12:44:36]  *** Contents of shared directory: ***
[2025-07-28 12:44:36] total 426644
[2025-07-28 12:44:36] -rw-r--r-- 2 boinc boinc 227740210 Jul 28 11:28 ATLAS.root_0
[2025-07-28 12:44:36] -rw-r--r-- 2 boinc boinc     15095 Jul 28 11:28 start_atlas.sh
[2025-07-28 12:44:36] -rw-r--r-- 2 boinc boinc    542891 Jul 28 11:28 input.tar.gz
[2025-07-28 12:44:36] -rw------- 1 boinc boinc 207778106 Jul 28 12:43 HITS.pool.root.1
[2025-07-28 12:44:36] -rw------- 1 boinc boinc    798720 Jul 28 12:44 result.tar.gz
12:44:37 (3610612): run_atlas exited; CPU time 47754.402931
12:44:37 (3610612): called boinc_finish(0)

</stderr_txt>
]]>

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