Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:46:35 (221985): wrapper (7.7.26015): starting
23:46:35 (221985): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 23:46:35] Arguments: --nthreads 8
[2025-07-27 23:46:35] Threads: 8
[2025-07-27 23:46:35] Checking for CVMFS
[2025-07-27 23:46:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:46:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:46:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:46:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:46:36] 2.13.0.0 654572 19299 314036 148834 2 456 18299249 32935936 14539 16776704 1 97691953 99.621 139693247 17900 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 23:46:36] CVMFS is ok
[2025-07-27 23:46:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:46:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:46:36] Further information can be found at the LHC@home message board.
[2025-07-27 23:46:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:46:36] Checking for apptainer binary...
[2025-07-27 23:46:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:46:36] Running /usr/bin/apptainer --version
[2025-07-27 23:46:36] apptainer version 1.4.1-1.el9
[2025-07-27 23:46:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:46:36] c7-3-28.aglt2.org
[2025-07-27 23:46:36] apptainer works
[2025-07-27 23:46:36] Set ATHENA_PROC_NUMBER=8
[2025-07-27 23:46:36] Set ATHENA_CORE_NUMBER=8
[2025-07-27 23:46:36] Starting ATLAS job with PandaID=6747412876
[2025-07-27 23:46:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:17:21]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:17:21]  storage_token=
[2025-07-28 01:17:21]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747412876/log.45743349._049759.job.log.tgz.1
[2025-07-28 01:17:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/ac/log.45743349._049759.job.log.tgz.1
[2025-07-28 01:17:21]  workdir=None
[2025-07-28 01:17:21] ]
[2025-07-28 01:17:21] 2025-07-28 05:16:37,848 | INFO     | transferring file log.45743349._049759.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747412876/log.45743349._049759.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 01:17:21] 2025-07-28 05:16:37,848 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747412876/log.45743349._049759.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._049759.job
[2025-07-28 01:17:21] 2025-07-28 05:16:37,875 | INFO     | adding to output.list: log.45743349._049759.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/ac/log.45743349._049759.job.log.tg
[2025-07-28 01:17:21] 2025-07-28 05:16:37,876 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 01:17:21] 2025-07-28 05:16:37,876 | INFO     | summary of transferred files:
[2025-07-28 01:17:21] 2025-07-28 05:16:37,876 | INFO     |  -- lfn=log.45743349._049759.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 01:17:21] 2025-07-28 05:16:37,877 | INFO     | stage-out finished correctly
[2025-07-28 01:17:21] 2025-07-28 05:16:38,214 | WARNING  | process 235165 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 01:17:21] 2025-07-28 05:16:38,215 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747412876/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:17:21] 2025-07-28 05:16:38,626 | INFO     | number of running child processes to parent process 235165: 1
[2025-07-28 01:17:21] 2025-07-28 05:16:38,626 | INFO     | maximum number of monitored processes: 6
[2025-07-28 01:17:21] 2025-07-28 05:16:38,796 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 01:17:21] 2025-07-28 05:16:41,130 | INFO     | monitor loop #389: job 0:6747412876 is in state 'finished'
[2025-07-28 01:17:21] 2025-07-28 05:16:41,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:17:21] 2025-07-28 05:16:41,780 | INFO     | job 6747412876 has state=finished
[2025-07-28 01:17:21] 2025-07-28 05:16:41,781 | INFO     | preparing for final server update for job 6747412876 in state='finished'
[2025-07-28 01:17:21] 2025-07-28 05:16:41,847 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 01:17:21] 2025-07-28 05:16:41,847 | INFO     | this job has now completed (state=finished)
[2025-07-28 01:17:21] 2025-07-28 05:16:41,847 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 01:17:21] 2025-07-28 05:16:41,847 | INFO     | log transfer has been attempted: DONE
[2025-07-28 01:17:21] 2025-07-28 05:16:41,847 | INFO     | job 6747412876 has finished - writing final server update
[2025-07-28 01:17:21] 2025-07-28 05:16:41,848 | INFO     | total number of processed events: 400 (read)
[2025-07-28 01:17:21] 2025-07-28 05:16:41,848 | INFO     | executing command: lscpu
[2025-07-28 01:17:21] 2025-07-28 05:16:41,925 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 01:17:21] 2025-07-28 05:16:42,563 | INFO     | PID=226548 has CPU usage=15.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:17:21] 2025-07-28 05:16:42,563 | INFO     | .. there are 14 such processes running
[2025-07-28 01:17:21] 2025-07-28 05:16:43,635 | INFO     | monitor loop #390: job 0:6747412876 is in state 'finished'
[2025-07-28 01:17:21] 2025-07-28 05:16:43,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:17:21] 2025-07-28 05:16:46,139 | INFO     | monitor loop #391: job 0:6747412876 is in state 'finished'
[2025-07-28 01:17:21] 2025-07-28 05:16:46,139 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:17:21] 2025-07-28 05:16:47,500 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 01:17:21] 2025-07-28 05:16:47,505 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3009.2661041666665
[2025-07-28 01:17:21] 2025-07-28 05:16:47,531 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747412876/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:17:21] 2025-07-28 05:16:47,531 | INFO     | extracted standard info from prmon json
[2025-07-28 01:17:21] 2025-07-28 05:16:47,531 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:17:21] 2025-07-28 05:16:47,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:17:21] 2025-07-28 05:16:47,532 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:17:21] 2025-07-28 05:16:47,532 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:17:21] 2025-07-28 05:16:47,533 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:17:21] 2025-07-28 05:16:47,534 | INFO     | sum of square deviations: 164765880.0
[2025-07-28 01:17:21] 2025-07-28 05:16:47,534 | INFO     | sum of deviations: -3048481588.000001
[2025-07-28 01:17:21] 2025-07-28 05:16:47,534 | INFO     | mean x: 1753677199.0
[2025-07-28 01:17:21] 2025-07-28 05:16:47,534 | INFO     | mean y: 2235027.1975308643
[2025-07-28 01:17:21] 2025-07-28 05:16:47,534 | INFO     | -- intersect: 32448592564.613132
[2025-07-28 01:17:21] 2025-07-28 05:16:47,534 | INFO     | intersect: 32448592564.613132
[2025-07-28 01:17:21] 2025-07-28 05:16:47,534 | INFO     | chi2: 0.08953385865767953
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | -- intersect: 32448592564.613132
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | current memory leak: -18.50 B/s (using 81 data points, chi2=0.09)
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | could have reported an average CPU frequency of 2953 MHz (6 samples)
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | ..............................
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | . Timing measurements:
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | . get job = 0 s
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | . initial setup = 5 s
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | . payload setup = 11 s
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | . stage-in = 0 s
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | . payload execution = 5347 s
[2025-07-28 01:17:21] 2025-07-28 05:16:47,535 | INFO     | . stage-out = 0 s
[2025-07-28 01:17:21] 2025-07-28 05:16:47,536 | INFO     | . log creation = 0 s
[2025-07-28 01:17:21] 2025-07-28 05:16:47,536 | INFO     | ..............................
[2025-07-28 01:17:21] 2025-07-28 05:16:47,595 | INFO     | 
[2025-07-28 01:17:21] 2025-07-28 05:16:47,595 | INFO     | job summary report
[2025-07-28 01:17:21] 2025-07-28 05:16:47,595 | INFO     | --------------------------------------------------
[2025-07-28 01:17:21] 2025-07-28 05:16:47,595 | INFO     | PanDA job id: 6747412876
[2025-07-28 01:17:21] 2025-07-28 05:16:47,595 | INFO     | task id: 45743349
[2025-07-28 01:17:21] 2025-07-28 05:16:47,595 | INFO     | errors: (none)
[2025-07-28 01:17:21] 2025-07-28 05:16:47,595 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:17:21] 2025-07-28 05:16:47,595 | INFO     | pilot state: finished 
[2025-07-28 01:17:21] 2025-07-28 05:16:47,595 | INFO     | transexitcode: 0
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | exeerrorcode: 0
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | exeerrordiag: 
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | exitcode: 0
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | exitmsg: OK
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | cpuconsumptiontime: 37872 s
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | nevents: 400
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | neventsw: 0
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | pid: 235165
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | pgrp: 235165
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | corecount: 8
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | event service: False
[2025-07-28 01:17:21] 2025-07-28 05:16:47,596 | INFO     | sizes: {0: 2397475, 8: 2397737, 11: 2397765, 5362: 2424188, 5363: 2433186, 5364: 2433242, 5373: 2433564}
[2025-07-28 01:17:21] 2025-07-28 05:16:47,597 | INFO     | --------------------------------------------------
[2025-07-28 01:17:21] 2025-07-28 05:16:47,598 | INFO     | 
[2025-07-28 01:17:21] 2025-07-28 05:16:47,598 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-28 01:17:21] 2025-07-28 05:16:47,618 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,619 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,619 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,619 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,619 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,619 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,619 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,619 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:17:21] 2025-07-28 05:16:47,620 | INFO     | job 6747412876 has completed (purged errors)
[2025-07-28 01:17:21] 2025-07-28 05:16:47,621 | INFO     | overall cleanup function is called
[2025-07-28 01:17:21] 2025-07-28 05:16:48,630 | INFO     | --- collectZombieJob: --- 10, [235165]
[2025-07-28 01:17:21] 2025-07-28 05:16:48,630 | INFO     | zombie collector waiting for pid 235165
[2025-07-28 01:17:21] 2025-07-28 05:16:48,630 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:17:21] 2025-07-28 05:16:48,630 | INFO     | collected zombie processes
[2025-07-28 01:17:21] 2025-07-28 05:16:48,631 | INFO     | will attempt to kill all subprocesses of pid=235165
[2025-07-28 01:17:21] 2025-07-28 05:16:49,075 | INFO     | process IDs to be killed: [235165] (in reverse order)
[2025-07-28 01:17:21] 2025-07-28 05:16:49,228 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:17:21] 2025-07-28 05:16:49,229 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:17:21] 2025-07-28 05:16:49,251 | INFO     | did not find any defunct processes belonging to 235165
[2025-07-28 01:17:21] 2025-07-28 05:16:49,271 | INFO     | did not find any defunct processes belonging to 235165
[2025-07-28 01:17:21] 2025-07-28 05:16:49,272 | INFO     | ready for new job
[2025-07-28 01:17:21] 2025-07-28 05:16:49,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:17:21] 2025-07-28 05:16:49,274 | INFO     | ***************************************
[2025-07-28 01:17:21] 2025-07-28 05:16:49,275 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:17:21] 2025-07-28 05:16:49,275 | INFO     | ***************************************
[2025-07-28 01:17:21] 2025-07-28 05:16:49,275 | INFO     | 
[2025-07-28 01:17:21] 2025-07-28 05:16:49,293 | INFO     | architecture information:
[2025-07-28 01:17:21] 2025-07-28 05:16:49,293 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:17:21] 2025-07-28 05:16:49,315 | INFO     | cat /etc/os-release:
[2025-07-28 01:17:21] NAME="CentOS Linux"
[2025-07-28 01:17:21] VERSION="7 (Core)"
[2025-07-28 01:17:21] ID="centos"
[2025-07-28 01:17:21] ID_LIKE="rhel fedora"
[2025-07-28 01:17:21] VERSION_ID="7"
[2025-07-28 01:17:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:17:21] ANSI_COLOR="0;31"
[2025-07-28 01:17:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:17:21] HOME_URL="https://www.centos.org/"
[2025-07-28 01:17:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:17:21] 
[2025-07-28 01:17:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:17:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:17:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:17:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:17:21] 
[2025-07-28 01:17:21] 2025-07-28 05:16:49,317 | INFO     | ***************************************
[2025-07-28 01:17:21] 2025-07-28 05:16:49,515 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-07-28 01:17:21] 2025-07-28 05:16:49,820 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-28 01:17:21] 2025-07-28 05:16:49,840 | INFO     | sufficient remaining disk space (76234620928 B)
[2025-07-28 01:17:21] 2025-07-28 05:16:49,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:17:21] 2025-07-28 05:16:49,841 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:17:21] 2025-07-28 05:16:49,841 | INFO     | update_server=False
[2025-07-28 01:17:21] 2025-07-28 05:16:49,841 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:17:21] 2025-07-28 05:16:49,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:17:21] 2025-07-28 05:16:49,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:17:21] 2025-07-28 05:16:49,842 | INFO     | aborting loop
[2025-07-28 01:17:21] 2025-07-28 05:16:50,734 | INFO     | all job control threads have been joined
[2025-07-28 01:17:21] 2025-07-28 05:16:50,806 | INFO     | all payload control threads have been joined
[2025-07-28 01:17:21] 2025-07-28 05:16:50,846 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:50,847 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:50,889 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:50,922 | INFO     | all data control threads have been joined
[2025-07-28 01:17:21] 2025-07-28 05:16:50,984 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:17:21] 2025-07-28 05:16:51,451 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:51,720 | INFO     | [job] validate thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:51,727 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:51,740 | INFO     | [job] control thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:51,811 | INFO     | [payload] control thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:51,927 | INFO     | [data] control thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:51,939 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:51,971 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:52,423 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:52,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:17:21] 2025-07-28 05:16:52,990 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:53,611 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:16:53,847 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:17:00,300 | INFO     | job.realtimelogging is not enabled
[2025-07-28 01:17:21] 2025-07-28 05:17:01,308 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:17:21] 2025-07-28 05:17:02,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139713122596672)>', '<ExcThread(monitor, started 139712752752384)>']
[2025-07-28 01:17:21] 2025-07-28 05:17:07,465 | INFO     | all workflow threads have been joined
[2025-07-28 01:17:21] 2025-07-28 05:17:07,465 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:17:21] 2025-07-28 05:17:07,466 | INFO     | traces error code: 0
[2025-07-28 01:17:21] 2025-07-28 05:17:07,466 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:17:21] 2025-07-28 05:17:21,262 | INFO     | PID=226548 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 01:17:21] 2025-07-28 05:17:21,263 | INFO     | .. there are 14 such processes running
[2025-07-28 01:17:21] 2025-07-28 05:17:21,264 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:17:21] 2025-07-28 05:17:21,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:17:21] 2025-07-28 05:17:21,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:17:21] 2025-07-28 05:17:21,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:17:21] 2025-07-28 05:17:21,264 | INFO     | [monitor] control thread has ended
[2025-07-28 01:17:21] 2025-07-28 05:17:21,440 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:17:21] 2025-07-28 05:17:21,446 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:17:21] 2025-07-28 05:17:21,450 [wrapper] pilotpid: 226548
[2025-07-28 01:17:21] 2025-07-28 05:17:21,455 [wrapper] Pilot exit status: 0
[2025-07-28 01:17:21] 2025-07-28 05:17:21,477 [wrapper] pandaids: 6747412876
[2025-07-28 01:17:21] 2025-07-28 05:17:21,605 [wrapper] cleanup supervisor_pilot  748280 226549
[2025-07-28 01:17:21] 2025-07-28 05:17:21,608 [wrapper] Test setup, not cleaning
[2025-07-28 01:17:21] 2025-07-28 05:17:21,613 [wrapper] apfmon messages muted
[2025-07-28 01:17:21] 2025-07-28 05:17:21,617 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:17:21] 2025-07-28 05:17:21,620 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:17:21]  *** Error codes and diagnostics ***
[2025-07-28 01:17:21]     "exeErrorCode": 0,
[2025-07-28 01:17:21]     "exeErrorDiag": "",
[2025-07-28 01:17:21]     "pilotErrorCode": 0,
[2025-07-28 01:17:21]     "pilotErrorDiag": "",
[2025-07-28 01:17:21]  *** Listing of results directory ***
[2025-07-28 01:17:21] total 431456
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:13 queuedata.json
[2025-07-28 01:17:21] -rwx------. 1 boincer umatlas     36292 Jul 27 10:14 runpilot2-wrapper.sh
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:17:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:46 run_atlas
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:46 job.xml
[2025-07-28 01:17:21] -rw-r--r--. 2 boincer umatlas 229889507 Jul 27 23:46 EVNT.45743347._002741.pool.root.1
[2025-07-28 01:17:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:46 start_atlas.sh
[2025-07-28 01:17:21] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:46 shared
[2025-07-28 01:17:21] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 23:46 input.tar.gz
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:46 boinc_lockfile
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 23:46 pandaJob.out
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas    980117 Jul 27 23:46 agis_schedconf.cvmfs.json
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:46 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:17:21] drwx------. 4 boincer umatlas      4096 Jul 27 23:46 pilot3
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas      6933 Jul 28 01:11 init_data.xml
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas 206377155 Jul 28 01:16 HITS.45743349._049759.pool.root.1
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas       529 Jul 28 01:16 boinc_task_state.xml
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas        95 Jul 28 01:16 pilot_heartbeat.json
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas      1027 Jul 28 01:16 memory_monitor_summary.json
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas    311643 Jul 28 01:16 log.45743349._049759.job.log.tgz.1
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas      7769 Jul 28 01:16 heartbeat.json
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 01:17 boinc_mmap_file
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas        27 Jul 28 01:17 wrapper_checkpoint.txt
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas       822 Jul 28 01:17 pilotlog.txt
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas    516394 Jul 28 01:17 log.45743349._049759.job.log.1
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas       357 Jul 28 01:17 output.list
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas       620 Jul 28 01:17 runtime_log
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas    849920 Jul 28 01:17 result.tar.gz
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas       651 Jul 28 01:17 vd8NDmBKH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvUVLDmQuvfHo.diag
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas      8655 Jul 28 01:17 runtime_log.err
[2025-07-28 01:17:21] -rw-r--r--. 1 boincer umatlas     22276 Jul 28 01:17 stderr.txt
[2025-07-28 01:17:21] HITS file was successfully produced:
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas 206377155 Jul 28 01:16 shared/HITS.pool.root.1
[2025-07-28 01:17:21]  *** Contents of shared directory: ***
[2025-07-28 01:17:21] total 427436
[2025-07-28 01:17:21] -rw-r--r--. 2 boincer umatlas 229889507 Jul 27 23:46 ATLAS.root_0
[2025-07-28 01:17:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:46 start_atlas.sh
[2025-07-28 01:17:21] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 23:46 input.tar.gz
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas 206377155 Jul 28 01:16 HITS.pool.root.1
[2025-07-28 01:17:21] -rw-------. 1 boincer umatlas    849920 Jul 28 01:17 result.tar.gz
01:17:22 (221985): run_atlas exited; CPU time 38053.904709
01:17:22 (221985): called boinc_finish(0)

</stderr_txt>
]]>

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