Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:48:04 (1509610): wrapper (7.7.26015): starting
00:48:04 (1509610): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 00:48:04] Arguments: --nthreads 12
[2025-07-28 00:48:04] Threads: 12
[2025-07-28 00:48:04] Checking for CVMFS
[2025-07-28 00:48:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 00:48:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 00:48:04] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 00:48:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 00:48:05] 2.12.6.0 418423 19345 318156 148836 0 65 29487787 32935936 9537 16776704 0 34762293 99.648 55661457 32890 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 00:48:05] CVMFS is ok
[2025-07-28 00:48:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 00:48:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 00:48:05] Further information can be found at the LHC@home message board.
[2025-07-28 00:48:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 00:48:05] Checking for apptainer binary...
[2025-07-28 00:48:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 00:48:05] Running /usr/bin/apptainer --version
[2025-07-28 00:48:05] apptainer version 1.4.1-1.el9
[2025-07-28 00:48:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 00:48:05] c6-1-26-2.aglt2.org
[2025-07-28 00:48:05] apptainer works
[2025-07-28 00:48:05] Set ATHENA_PROC_NUMBER=12
[2025-07-28 00:48:05] Set ATHENA_CORE_NUMBER=12
[2025-07-28 00:48:05] Starting ATLAS job with PandaID=6748388150
[2025-07-28 00:48:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 02:08:44]  *** The last 200 lines of the pilot log: ***
[2025-07-28 02:08:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 02:08:44]  replicas=None
[2025-07-28 02:08:44]  scope=mc23_13p6TeV
[2025-07-28 02:08:44]  status=None
[2025-07-28 02:08:44]  status_code=0
[2025-07-28 02:08:44]  storage_token=
[2025-07-28 02:08:44]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748388150/log.45743349._056100.job.log.tgz.1
[2025-07-28 02:08:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/fa/log.45743349._056100.job.log.tgz.1
[2025-07-28 02:08:44]  workdir=None
[2025-07-28 02:08:44] ]
[2025-07-28 02:08:44] 2025-07-28 06:08:06,345 | INFO     | transferring file log.45743349._056100.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748388150/log.45743349._056100.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 02:08:44] 2025-07-28 06:08:06,345 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748388150/log.45743349._056100.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056100.job
[2025-07-28 02:08:44] 2025-07-28 06:08:06,367 | INFO     | adding to output.list: log.45743349._056100.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/fa/log.45743349._056100.job.log.tg
[2025-07-28 02:08:44] 2025-07-28 06:08:06,368 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 02:08:44] 2025-07-28 06:08:06,368 | INFO     | summary of transferred files:
[2025-07-28 02:08:44] 2025-07-28 06:08:06,369 | INFO     |  -- lfn=log.45743349._056100.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 02:08:44] 2025-07-28 06:08:06,369 | INFO     | stage-out finished correctly
[2025-07-28 02:08:44] 2025-07-28 06:08:06,448 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 02:08:44] 2025-07-28 06:08:06,809 | WARNING  | process 1521636 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 02:08:44] 2025-07-28 06:08:06,810 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748388150/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 02:08:44] 2025-07-28 06:08:07,068 | INFO     | job 6748388150 has state=finished
[2025-07-28 02:08:44] 2025-07-28 06:08:07,069 | INFO     | preparing for final server update for job 6748388150 in state='finished'
[2025-07-28 02:08:44] 2025-07-28 06:08:07,078 | INFO     | number of running child processes to parent process 1521636: 1
[2025-07-28 02:08:44] 2025-07-28 06:08:07,078 | INFO     | maximum number of monitored processes: 6
[2025-07-28 02:08:44] 2025-07-28 06:08:07,135 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 02:08:44] 2025-07-28 06:08:07,136 | INFO     | this job has now completed (state=finished)
[2025-07-28 02:08:44] 2025-07-28 06:08:07,136 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 02:08:44] 2025-07-28 06:08:07,136 | INFO     | log transfer has been attempted: DONE
[2025-07-28 02:08:44] 2025-07-28 06:08:07,136 | INFO     | job 6748388150 has finished - writing final server update
[2025-07-28 02:08:44] 2025-07-28 06:08:07,136 | INFO     | total number of processed events: 400 (read)
[2025-07-28 02:08:44] 2025-07-28 06:08:07,137 | INFO     | executing command: lscpu
[2025-07-28 02:08:44] 2025-07-28 06:08:07,192 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 02:08:44] 2025-07-28 06:08:07,702 | INFO     | PID=1513782 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 02:08:44] 2025-07-28 06:08:07,702 | INFO     | .. there are 11 such processes running
[2025-07-28 02:08:44] 2025-07-28 06:08:09,581 | INFO     | monitor loop #347: job 0:6748388150 is in state 'finished'
[2025-07-28 02:08:44] 2025-07-28 06:08:09,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 02:08:44] 2025-07-28 06:08:11,886 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 02:08:44] 2025-07-28 06:08:11,890 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2564.3640714285716
[2025-07-28 02:08:44] 2025-07-28 06:08:11,911 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748388150/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 02:08:44] 2025-07-28 06:08:11,912 | INFO     | extracted standard info from prmon json
[2025-07-28 02:08:44] 2025-07-28 06:08:11,912 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 02:08:44] 2025-07-28 06:08:11,913 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 02:08:44] 2025-07-28 06:08:11,913 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 02:08:44] 2025-07-28 06:08:11,913 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 02:08:44] 2025-07-28 06:08:11,915 | INFO     | fitting pss+swap vs Time
[2025-07-28 02:08:44] 2025-07-28 06:08:11,915 | INFO     | sum of square deviations: 110960220.0
[2025-07-28 02:08:44] 2025-07-28 06:08:11,916 | INFO     | sum of deviations: -10391543370.0
[2025-07-28 02:08:44] 2025-07-28 06:08:11,916 | INFO     | mean x: 1753680570.0
[2025-07-28 02:08:44] 2025-07-28 06:08:11,916 | INFO     | mean y: 2527254.0
[2025-07-28 02:08:44] 2025-07-28 06:08:11,916 | INFO     | -- intersect: 164236589698.01212
[2025-07-28 02:08:44] 2025-07-28 06:08:11,916 | INFO     | intersect: 164236589698.01212
[2025-07-28 02:08:44] 2025-07-28 06:08:11,916 | INFO     | chi2: 0.17914818418031578
[2025-07-28 02:08:44] 2025-07-28 06:08:11,916 | INFO     | -- intersect: 164236589698.01212
[2025-07-28 02:08:44] 2025-07-28 06:08:11,916 | INFO     | current memory leak: -93.65 B/s (using 71 data points, chi2=0.18)
[2025-07-28 02:08:44] 2025-07-28 06:08:11,916 | INFO     | could have reported an average CPU frequency of 2647 MHz (6 samples)
[2025-07-28 02:08:44] 2025-07-28 06:08:11,917 | INFO     | ..............................
[2025-07-28 02:08:44] 2025-07-28 06:08:11,917 | INFO     | . Timing measurements:
[2025-07-28 02:08:44] 2025-07-28 06:08:11,917 | INFO     | . get job = 0 s
[2025-07-28 02:08:44] 2025-07-28 06:08:11,917 | INFO     | . initial setup = 2 s
[2025-07-28 02:08:44] 2025-07-28 06:08:11,917 | INFO     | . payload setup = 8 s
[2025-07-28 02:08:44] 2025-07-28 06:08:11,917 | INFO     | . stage-in = 0 s
[2025-07-28 02:08:44] 2025-07-28 06:08:11,917 | INFO     | . payload execution = 4758 s
[2025-07-28 02:08:44] 2025-07-28 06:08:11,917 | INFO     | . stage-out = 0 s
[2025-07-28 02:08:44] 2025-07-28 06:08:11,917 | INFO     | . log creation = 0 s
[2025-07-28 02:08:44] 2025-07-28 06:08:11,917 | INFO     | ..............................
[2025-07-28 02:08:44] 2025-07-28 06:08:12,004 | INFO     | 
[2025-07-28 02:08:44] 2025-07-28 06:08:12,004 | INFO     | job summary report
[2025-07-28 02:08:44] 2025-07-28 06:08:12,004 | INFO     | --------------------------------------------------
[2025-07-28 02:08:44] 2025-07-28 06:08:12,004 | INFO     | PanDA job id: 6748388150
[2025-07-28 02:08:44] 2025-07-28 06:08:12,004 | INFO     | task id: 45743349
[2025-07-28 02:08:44] 2025-07-28 06:08:12,004 | INFO     | errors: (none)
[2025-07-28 02:08:44] 2025-07-28 06:08:12,004 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | pilot state: finished 
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | transexitcode: 0
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | exeerrorcode: 0
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | exeerrordiag: 
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | exitcode: 0
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | exitmsg: OK
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | cpuconsumptiontime: 49005 s
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | nevents: 400
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | neventsw: 0
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | pid: 1521636
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | pgrp: 1521636
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | corecount: 12
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | event service: False
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | sizes: {0: 2397312, 1: 2397511, 6: 2397773, 11: 2397801, 4769: 2423905, 4770: 2423904, 4771: 2433142, 4776: 2433280}
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | --------------------------------------------------
[2025-07-28 02:08:44] 2025-07-28 06:08:12,005 | INFO     | 
[2025-07-28 02:08:44] 2025-07-28 06:08:12,006 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 02:08:44] 2025-07-28 06:08:12,025 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,025 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,025 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,025 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,025 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,025 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,025 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 02:08:44] 2025-07-28 06:08:12,026 | INFO     | job 6748388150 has completed (purged errors)
[2025-07-28 02:08:44] 2025-07-28 06:08:12,027 | INFO     | overall cleanup function is called
[2025-07-28 02:08:44] 2025-07-28 06:08:13,034 | INFO     | --- collectZombieJob: --- 10, [1521636]
[2025-07-28 02:08:44] 2025-07-28 06:08:13,034 | INFO     | zombie collector waiting for pid 1521636
[2025-07-28 02:08:44] 2025-07-28 06:08:13,035 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 02:08:44] 2025-07-28 06:08:13,035 | INFO     | collected zombie processes
[2025-07-28 02:08:44] 2025-07-28 06:08:13,035 | INFO     | will attempt to kill all subprocesses of pid=1521636
[2025-07-28 02:08:44] 2025-07-28 06:08:13,370 | INFO     | process IDs to be killed: [1521636] (in reverse order)
[2025-07-28 02:08:44] 2025-07-28 06:08:13,467 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 02:08:44] 2025-07-28 06:08:13,468 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 02:08:44] 2025-07-28 06:08:13,479 | INFO     | did not find any defunct processes belonging to 1521636
[2025-07-28 02:08:44] 2025-07-28 06:08:13,491 | INFO     | did not find any defunct processes belonging to 1521636
[2025-07-28 02:08:44] 2025-07-28 06:08:13,491 | INFO     | ready for new job
[2025-07-28 02:08:44] 2025-07-28 06:08:13,491 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 02:08:44] 2025-07-28 06:08:13,493 | INFO     | ***************************************
[2025-07-28 02:08:44] 2025-07-28 06:08:13,493 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 02:08:44] 2025-07-28 06:08:13,493 | INFO     | ***************************************
[2025-07-28 02:08:44] 2025-07-28 06:08:13,493 | INFO     | 
[2025-07-28 02:08:44] 2025-07-28 06:08:13,508 | INFO     | architecture information:
[2025-07-28 02:08:44] 2025-07-28 06:08:13,508 | INFO     | executing command: cat /etc/os-release
[2025-07-28 02:08:44] 2025-07-28 06:08:13,522 | INFO     | cat /etc/os-release:
[2025-07-28 02:08:44] NAME="CentOS Linux"
[2025-07-28 02:08:44] VERSION="7 (Core)"
[2025-07-28 02:08:44] ID="centos"
[2025-07-28 02:08:44] ID_LIKE="rhel fedora"
[2025-07-28 02:08:44] VERSION_ID="7"
[2025-07-28 02:08:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 02:08:44] ANSI_COLOR="0;31"
[2025-07-28 02:08:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 02:08:44] HOME_URL="https://www.centos.org/"
[2025-07-28 02:08:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 02:08:44] 
[2025-07-28 02:08:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 02:08:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 02:08:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 02:08:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 02:08:44] 
[2025-07-28 02:08:44] 2025-07-28 06:08:13,523 | INFO     | ***************************************
[2025-07-28 02:08:44] 2025-07-28 06:08:14,025 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 02:08:44] 2025-07-28 06:08:14,045 | INFO     | sufficient remaining disk space (76673974272 B)
[2025-07-28 02:08:44] 2025-07-28 06:08:14,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 02:08:44] 2025-07-28 06:08:14,046 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 02:08:44] 2025-07-28 06:08:14,046 | INFO     | update_server=False
[2025-07-28 02:08:44] 2025-07-28 06:08:14,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 02:08:44] 2025-07-28 06:08:14,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 02:08:44] 2025-07-28 06:08:14,046 | INFO     | aborting loop
[2025-07-28 02:08:44] 2025-07-28 06:08:14,348 | INFO     | all data control threads have been joined
[2025-07-28 02:08:44] 2025-07-28 06:08:14,387 | INFO     | all payload control threads have been joined
[2025-07-28 02:08:44] 2025-07-28 06:08:14,463 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 02:08:44] 2025-07-28 06:08:14,492 | INFO     | all job control threads have been joined
[2025-07-28 02:08:44] 2025-07-28 06:08:15,051 | INFO     | [job] job monitor thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:15,052 | INFO     | [job] retrieve thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:15,177 | INFO     | [data] copytool_in thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:15,353 | INFO     | [data] control thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:15,393 | INFO     | [payload] control thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:15,408 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:15,497 | INFO     | [job] control thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:15,700 | INFO     | [payload] failed_post thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:15,761 | INFO     | [job] validate thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:15,831 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:16,080 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:16,087 | INFO     | [payload] validate_post thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:16,469 | INFO     | [data] copytool_out thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:17,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 02:08:44] 2025-07-28 06:08:17,057 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 02:08:44] 2025-07-28 06:08:18,018 | INFO     | [job] queue monitor thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:21,063 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:24,789 | INFO     | job.realtimelogging is not enabled
[2025-07-28 02:08:44] 2025-07-28 06:08:25,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 02:08:44] 2025-07-28 06:08:26,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139664343959360)>', '<ExcThread(monitor, started 139663847175936)>']
[2025-07-28 02:08:44] 2025-07-28 06:08:31,336 | INFO     | all workflow threads have been joined
[2025-07-28 02:08:44] 2025-07-28 06:08:31,336 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 02:08:44] 2025-07-28 06:08:31,337 | INFO     | traces error code: 0
[2025-07-28 02:08:44] 2025-07-28 06:08:31,337 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 02:08:44] 2025-07-28 06:08:44,117 | INFO     | PID=1513782 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 02:08:44] 2025-07-28 06:08:44,117 | INFO     | .. there are 11 such processes running
[2025-07-28 02:08:44] 2025-07-28 06:08:44,118 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 02:08:44] 2025-07-28 06:08:44,118 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 02:08:44] 2025-07-28 06:08:44,118 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 02:08:44] 2025-07-28 06:08:44,118 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 02:08:44] 2025-07-28 06:08:44,118 | INFO     | [monitor] control thread has ended
[2025-07-28 02:08:44] 2025-07-28 06:08:44,313 [wrapper] ==== pilot stdout END ====
[2025-07-28 02:08:44] 2025-07-28 06:08:44,316 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 02:08:44] 2025-07-28 06:08:44,321 [wrapper] pilotpid: 1513782
[2025-07-28 02:08:44] 2025-07-28 06:08:44,324 [wrapper] Pilot exit status: 0
[2025-07-28 02:08:44] 2025-07-28 06:08:44,335 [wrapper] pandaids: 6748388150
[2025-07-28 02:08:44] 2025-07-28 06:08:44,400 [wrapper] cleanup supervisor_pilot 1744843 1513783
[2025-07-28 02:08:44] 2025-07-28 06:08:44,404 [wrapper] Test setup, not cleaning
[2025-07-28 02:08:44] 2025-07-28 06:08:44,407 [wrapper] apfmon messages muted
[2025-07-28 02:08:44] 2025-07-28 06:08:44,409 [wrapper] ==== wrapper stdout END ====
[2025-07-28 02:08:44] 2025-07-28 06:08:44,412 [wrapper] ==== wrapper stderr END ====
[2025-07-28 02:08:44]  *** Error codes and diagnostics ***
[2025-07-28 02:08:44]     "exeErrorCode": 0,
[2025-07-28 02:08:44]     "exeErrorDiag": "",
[2025-07-28 02:08:44]     "pilotErrorCode": 0,
[2025-07-28 02:08:44]     "pilotErrorDiag": "",
[2025-07-28 02:08:44]  *** Listing of results directory ***
[2025-07-28 02:08:44] total 355192
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 21:42 pilot3.tar.gz
[2025-07-28 02:08:44] -rwx------. 1 boincer umatlas     36292 Jul 27 21:46 runpilot2-wrapper.sh
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 21:46 queuedata.json
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas       100 Jul 28 00:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 02:08:44] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 00:48 run_atlas
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas       105 Jul 28 00:48 job.xml
[2025-07-28 02:08:44] -rw-r--r--. 2 boincer umatlas 146433320 Jul 28 00:48 EVNT.45743347._003002.pool.root.1
[2025-07-28 02:08:44] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 00:48 start_atlas.sh
[2025-07-28 02:08:44] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 00:48 shared
[2025-07-28 02:08:44] -rw-r--r--. 2 boincer umatlas    542892 Jul 28 00:48 input.tar.gz
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas         0 Jul 28 00:48 boinc_lockfile
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas      2571 Jul 28 00:48 pandaJob.out
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas    980125 Jul 28 00:48 agis_schedconf.cvmfs.json
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas   1593052 Jul 28 00:48 agis_ddmendpoints.agis.ALL.json
[2025-07-28 02:08:44] drwx------. 4 boincer umatlas      4096 Jul 28 00:48 pilot3
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas      6843 Jul 28 02:03 init_data.xml
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas 211743174 Jul 28 02:07 HITS.45743349._056100.pool.root.1
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas       529 Jul 28 02:07 boinc_task_state.xml
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas      1035 Jul 28 02:08 memory_monitor_summary.json
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas    361204 Jul 28 02:08 log.45743349._056100.job.log.tgz.1
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas      7820 Jul 28 02:08 heartbeat.json
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 02:08 boinc_mmap_file
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas        27 Jul 28 02:08 wrapper_checkpoint.txt
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas        95 Jul 28 02:08 pilot_heartbeat.json
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas       823 Jul 28 02:08 pilotlog.txt
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas    468416 Jul 28 02:08 log.45743349._056100.job.log.1
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas       357 Jul 28 02:08 output.list
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas       620 Jul 28 02:08 runtime_log
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas    849920 Jul 28 02:08 result.tar.gz
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas       655 Jul 28 02:08 WIwKDms7R07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgXWLDmh4H3Nm.diag
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 02:08 runtime_log.err
[2025-07-28 02:08:44] -rw-r--r--. 1 boincer umatlas     21981 Jul 28 02:08 stderr.txt
[2025-07-28 02:08:44] HITS file was successfully produced:
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas 211743174 Jul 28 02:07 shared/HITS.pool.root.1
[2025-07-28 02:08:44]  *** Contents of shared directory: ***
[2025-07-28 02:08:44] total 351172
[2025-07-28 02:08:44] -rw-r--r--. 2 boincer umatlas 146433320 Jul 28 00:48 ATLAS.root_0
[2025-07-28 02:08:44] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 00:48 start_atlas.sh
[2025-07-28 02:08:44] -rw-r--r--. 2 boincer umatlas    542892 Jul 28 00:48 input.tar.gz
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas 211743174 Jul 28 02:07 HITS.pool.root.1
[2025-07-28 02:08:44] -rw-------. 1 boincer umatlas    849920 Jul 28 02:08 result.tar.gz
02:09:06 (1509610): run_atlas exited; CPU time 49103.550866
02:09:06 (1509610): called boinc_finish(0)

</stderr_txt>
]]>

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