Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:26:34 (3254273): wrapper (7.7.26015): starting
23:26:34 (3254273): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 23:26:34] Arguments: --nthreads 8
[2025-07-27 23:26:34] Threads: 8
[2025-07-27 23:26:34] Checking for CVMFS
[2025-07-27 23:26:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:26:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:26:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:26:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:26:35] 2.13.1.0 1602499 13827 212212 148834 2 65 23093155 40960001 15990 16776704 0 80386054 99.753 79265048 35851 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 23:26:35] CVMFS is ok
[2025-07-27 23:26:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:26:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:26:35] Further information can be found at the LHC@home message board.
[2025-07-27 23:26:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:26:35] Checking for apptainer binary...
[2025-07-27 23:26:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:26:35] Running /usr/bin/apptainer --version
[2025-07-27 23:26:35] apptainer version 1.4.1-1.el9
[2025-07-27 23:26:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:26:35] c-212-17.aglt2.org
[2025-07-27 23:26:35] apptainer works
[2025-07-27 23:26:35] Set ATHENA_PROC_NUMBER=8
[2025-07-27 23:26:35] Set ATHENA_CORE_NUMBER=8
[2025-07-27 23:26:35] Starting ATLAS job with PandaID=6747411814
[2025-07-27 23:26:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:00:24]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:00:24]  replicas=None
[2025-07-28 01:00:24]  scope=mc23_13p6TeV
[2025-07-28 01:00:24]  status=None
[2025-07-28 01:00:24]  status_code=0
[2025-07-28 01:00:24]  storage_token=
[2025-07-28 01:00:24]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6747411814/log.45743349._048947.job.log.tgz.1
[2025-07-28 01:00:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/7e/log.45743349._048947.job.log.tgz.1
[2025-07-28 01:00:24]  workdir=None
[2025-07-28 01:00:24] ]
[2025-07-28 01:00:24] 2025-07-28 04:59:43,128 | INFO     | transferring file log.45743349._048947.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6747411814/log.45743349._048947.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 01:00:24] 2025-07-28 04:59:43,128 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6747411814/log.45743349._048947.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._048947.job
[2025-07-28 01:00:24] 2025-07-28 04:59:43,162 | INFO     | adding to output.list: log.45743349._048947.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/7e/log.45743349._048947.job.log.tg
[2025-07-28 01:00:24] 2025-07-28 04:59:43,163 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 01:00:24] 2025-07-28 04:59:43,163 | INFO     | summary of transferred files:
[2025-07-28 01:00:24] 2025-07-28 04:59:43,163 | INFO     |  -- lfn=log.45743349._048947.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 01:00:24] 2025-07-28 04:59:43,163 | INFO     | stage-out finished correctly
[2025-07-28 01:00:24] 2025-07-28 04:59:43,948 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 01:00:24] 2025-07-28 04:59:46,262 | INFO     | job 6747411814 has state=finished
[2025-07-28 01:00:24] 2025-07-28 04:59:46,262 | INFO     | preparing for final server update for job 6747411814 in state='finished'
[2025-07-28 01:00:24] 2025-07-28 04:59:46,262 | INFO     | this job has now completed (state=finished)
[2025-07-28 01:00:24] 2025-07-28 04:59:46,262 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 01:00:24] 2025-07-28 04:59:46,262 | INFO     | log transfer has been attempted: DONE
[2025-07-28 01:00:24] 2025-07-28 04:59:46,263 | INFO     | job 6747411814 has finished - writing final server update
[2025-07-28 01:00:24] 2025-07-28 04:59:46,263 | INFO     | total number of processed events: 400 (read)
[2025-07-28 01:00:24] 2025-07-28 04:59:46,269 | INFO     | executing command: lscpu
[2025-07-28 01:00:24] 2025-07-28 04:59:46,339 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 01:00:24] 2025-07-28 04:59:46,696 | WARNING  | process 3266462 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 01:00:24] 2025-07-28 04:59:46,697 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747411814/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:00:24] 2025-07-28 04:59:47,081 | INFO     | number of running child processes to parent process 3266462: 1
[2025-07-28 01:00:24] 2025-07-28 04:59:47,081 | INFO     | maximum number of monitored processes: 6
[2025-07-28 01:00:24] 2025-07-28 04:59:49,585 | INFO     | monitor loop #401: job 0:6747411814 is in state 'finished'
[2025-07-28 01:00:24] 2025-07-28 04:59:49,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:00:24] 2025-07-28 04:59:51,911 | INFO     | PID=3258493 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 01:00:24] 2025-07-28 04:59:51,912 | INFO     | .. there are 16 such processes running
[2025-07-28 01:00:24] 2025-07-28 04:59:52,089 | INFO     | monitor loop #402: job 0:6747411814 is in state 'finished'
[2025-07-28 01:00:24] 2025-07-28 04:59:52,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:00:24] 2025-07-28 04:59:52,672 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 01:00:24] 2025-07-28 04:59:52,692 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3059.2612187500004
[2025-07-28 01:00:24] 2025-07-28 04:59:52,708 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747411814/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:00:24] 2025-07-28 04:59:52,709 | INFO     | extracted standard info from prmon json
[2025-07-28 01:00:24] 2025-07-28 04:59:52,709 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:00:24] 2025-07-28 04:59:52,709 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:00:24] 2025-07-28 04:59:52,709 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:00:24] 2025-07-28 04:59:52,709 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:00:24] 2025-07-28 04:59:52,711 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:00:24] 2025-07-28 04:59:52,711 | INFO     | sum of square deviations: 183761585.0
[2025-07-28 01:00:24] 2025-07-28 04:59:52,711 | INFO     | sum of deviations: -15619961156.999998
[2025-07-28 01:00:24] 2025-07-28 04:59:52,711 | INFO     | mean x: 1753676081.5
[2025-07-28 01:00:24] 2025-07-28 04:59:52,711 | INFO     | mean y: 2658546.3095238097
[2025-07-28 01:00:24] 2025-07-28 04:59:52,711 | INFO     | -- intersect: 149067286362.78137
[2025-07-28 01:00:24] 2025-07-28 04:59:52,711 | INFO     | intersect: 149067286362.78137
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | chi2: 0.06763549003206866
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | -- intersect: 149067286362.78137
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | current memory leak: -85.00 B/s (using 84 data points, chi2=0.07)
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | could have reported an average CPU frequency of 3129 MHz (7 samples)
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | ..............................
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | . Timing measurements:
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | . get job = 0 s
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | . initial setup = 2 s
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | . payload setup = 9 s
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | . stage-in = 0 s
[2025-07-28 01:00:24] 2025-07-28 04:59:52,712 | INFO     | . payload execution = 5540 s
[2025-07-28 01:00:24] 2025-07-28 04:59:52,713 | INFO     | . stage-out = 0 s
[2025-07-28 01:00:24] 2025-07-28 04:59:52,713 | INFO     | . log creation = 0 s
[2025-07-28 01:00:24] 2025-07-28 04:59:52,713 | INFO     | ..............................
[2025-07-28 01:00:24] 2025-07-28 04:59:52,775 | INFO     | 
[2025-07-28 01:00:24] 2025-07-28 04:59:52,776 | INFO     | job summary report
[2025-07-28 01:00:24] 2025-07-28 04:59:52,776 | INFO     | --------------------------------------------------
[2025-07-28 01:00:24] 2025-07-28 04:59:52,776 | INFO     | PanDA job id: 6747411814
[2025-07-28 01:00:24] 2025-07-28 04:59:52,776 | INFO     | task id: 45743349
[2025-07-28 01:00:24] 2025-07-28 04:59:52,776 | INFO     | errors: (none)
[2025-07-28 01:00:24] 2025-07-28 04:59:52,776 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:00:24] 2025-07-28 04:59:52,776 | INFO     | pilot state: finished 
[2025-07-28 01:00:24] 2025-07-28 04:59:52,776 | INFO     | transexitcode: 0
[2025-07-28 01:00:24] 2025-07-28 04:59:52,776 | INFO     | exeerrorcode: 0
[2025-07-28 01:00:24] 2025-07-28 04:59:52,776 | INFO     | exeerrordiag: 
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | exitcode: 0
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | exitmsg: OK
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | cpuconsumptiontime: 39380 s
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | nevents: 400
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | neventsw: 0
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | pid: 3266462
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | pgrp: 3266462
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | corecount: 8
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | event service: False
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | sizes: {0: 2397472, 7: 2397734, 11: 2397762, 5554: 2424168, 5555: 2433166, 5556: 2433222, 5565: 2433544}
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | --------------------------------------------------
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | 
[2025-07-28 01:00:24] 2025-07-28 04:59:52,777 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-28 01:00:24] 2025-07-28 04:59:52,809 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,809 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,809 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,810 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:00:24] 2025-07-28 04:59:52,811 | INFO     | job 6747411814 has completed (purged errors)
[2025-07-28 01:00:24] 2025-07-28 04:59:52,811 | INFO     | overall cleanup function is called
[2025-07-28 01:00:24] 2025-07-28 04:59:53,819 | INFO     | --- collectZombieJob: --- 10, [3266462]
[2025-07-28 01:00:24] 2025-07-28 04:59:53,819 | INFO     | zombie collector waiting for pid 3266462
[2025-07-28 01:00:24] 2025-07-28 04:59:53,819 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:00:24] 2025-07-28 04:59:53,819 | INFO     | collected zombie processes
[2025-07-28 01:00:24] 2025-07-28 04:59:53,819 | INFO     | will attempt to kill all subprocesses of pid=3266462
[2025-07-28 01:00:24] 2025-07-28 04:59:54,232 | INFO     | process IDs to be killed: [3266462] (in reverse order)
[2025-07-28 01:00:24] 2025-07-28 04:59:54,386 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:00:24] 2025-07-28 04:59:54,386 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:00:24] 2025-07-28 04:59:54,403 | INFO     | did not find any defunct processes belonging to 3266462
[2025-07-28 01:00:24] 2025-07-28 04:59:54,419 | INFO     | did not find any defunct processes belonging to 3266462
[2025-07-28 01:00:24] 2025-07-28 04:59:54,419 | INFO     | ready for new job
[2025-07-28 01:00:24] 2025-07-28 04:59:54,420 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:00:24] 2025-07-28 04:59:54,422 | INFO     | ***************************************
[2025-07-28 01:00:24] 2025-07-28 04:59:54,422 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:00:24] 2025-07-28 04:59:54,422 | INFO     | ***************************************
[2025-07-28 01:00:24] 2025-07-28 04:59:54,422 | INFO     | 
[2025-07-28 01:00:24] 2025-07-28 04:59:54,427 | INFO     | architecture information:
[2025-07-28 01:00:24] 2025-07-28 04:59:54,427 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:00:24] 2025-07-28 04:59:54,450 | INFO     | cat /etc/os-release:
[2025-07-28 01:00:24] NAME="CentOS Linux"
[2025-07-28 01:00:24] VERSION="7 (Core)"
[2025-07-28 01:00:24] ID="centos"
[2025-07-28 01:00:24] ID_LIKE="rhel fedora"
[2025-07-28 01:00:24] VERSION_ID="7"
[2025-07-28 01:00:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:00:24] ANSI_COLOR="0;31"
[2025-07-28 01:00:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:00:24] HOME_URL="https://www.centos.org/"
[2025-07-28 01:00:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:00:24] 
[2025-07-28 01:00:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:00:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:00:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:00:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:00:24] 
[2025-07-28 01:00:24] 2025-07-28 04:59:54,451 | INFO     | ***************************************
[2025-07-28 01:00:24] 2025-07-28 04:59:54,954 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-28 01:00:24] 2025-07-28 04:59:54,977 | INFO     | sufficient remaining disk space (129384841216 B)
[2025-07-28 01:00:24] 2025-07-28 04:59:54,977 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:00:24] 2025-07-28 04:59:54,977 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:00:24] 2025-07-28 04:59:54,977 | INFO     | update_server=False
[2025-07-28 01:00:24] 2025-07-28 04:59:54,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:00:24] 2025-07-28 04:59:54,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:00:24] 2025-07-28 04:59:55,291 | INFO     | all job control threads have been joined
[2025-07-28 01:00:24] 2025-07-28 04:59:55,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:00:24] 2025-07-28 04:59:55,599 | INFO     | aborting loop
[2025-07-28 01:00:24] 2025-07-28 04:59:55,983 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:56,012 | INFO     | all data control threads have been joined
[2025-07-28 01:00:24] 2025-07-28 04:59:56,206 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:56,207 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:56,251 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:00:24] 2025-07-28 04:59:56,296 | INFO     | [job] control thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:56,413 | INFO     | all payload control threads have been joined
[2025-07-28 01:00:24] 2025-07-28 04:59:56,604 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:56,621 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:56,808 | INFO     | [job] validate thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:57,017 | INFO     | [data] control thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:57,030 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:57,107 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:57,173 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:57,418 | INFO     | [payload] control thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:57,786 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:00:24] 2025-07-28 04:59:58,256 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:58,792 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:00:24] 2025-07-28 04:59:58,986 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:00:24] 2025-07-28 05:00:05,387 | INFO     | job.realtimelogging is not enabled
[2025-07-28 01:00:24] 2025-07-28 05:00:06,392 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:00:24] 2025-07-28 05:00:07,963 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140637757499200)>', '<ExcThread(monitor, started 140637387073280)>']
[2025-07-28 01:00:24] 2025-07-28 05:00:12,988 | INFO     | all workflow threads have been joined
[2025-07-28 01:00:24] 2025-07-28 05:00:12,988 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:00:24] 2025-07-28 05:00:12,988 | INFO     | traces error code: 0
[2025-07-28 01:00:24] 2025-07-28 05:00:12,988 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:00:24] 2025-07-28 05:00:24,410 | INFO     | PID=3258493 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:00:24] 2025-07-28 05:00:24,410 | INFO     | .. there are 16 such processes running
[2025-07-28 01:00:24] 2025-07-28 05:00:24,410 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:00:24] 2025-07-28 05:00:24,410 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:00:24] 2025-07-28 05:00:24,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:00:24] 2025-07-28 05:00:24,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:00:24] 2025-07-28 05:00:24,411 | INFO     | [monitor] control thread has ended
[2025-07-28 01:00:24] 2025-07-28 05:00:24,556 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:00:24] 2025-07-28 05:00:24,560 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:00:24] 2025-07-28 05:00:24,566 [wrapper] pilotpid: 3258493
[2025-07-28 01:00:24] 2025-07-28 05:00:24,573 [wrapper] Pilot exit status: 0
[2025-07-28 01:00:24] 2025-07-28 05:00:24,589 [wrapper] pandaids: 6747411814
[2025-07-28 01:00:24] 2025-07-28 05:00:24,705 [wrapper] cleanup supervisor_pilot 3811441 3258494
[2025-07-28 01:00:24] 2025-07-28 05:00:24,711 [wrapper] Test setup, not cleaning
[2025-07-28 01:00:24] 2025-07-28 05:00:24,716 [wrapper] apfmon messages muted
[2025-07-28 01:00:24] 2025-07-28 05:00:24,723 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:00:24] 2025-07-28 05:00:24,729 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:00:24]  *** Error codes and diagnostics ***
[2025-07-28 01:00:24]     "exeErrorCode": 0,
[2025-07-28 01:00:24]     "exeErrorDiag": "",
[2025-07-28 01:00:24]     "pilotErrorCode": 0,
[2025-07-28 01:00:24]     "pilotErrorDiag": "",
[2025-07-28 01:00:24]  *** Listing of results directory ***
[2025-07-28 01:00:24] total 437604
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 09:04 pilot3.tar.gz
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 09:14 queuedata.json
[2025-07-28 01:00:24] -rwx------. 1 boincer umatlas     36292 Jul 27 09:15 runpilot2-wrapper.sh
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:00:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:26 run_atlas
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:26 job.xml
[2025-07-28 01:00:24] -rw-r--r--. 2 boincer umatlas 230645341 Jul 27 23:26 EVNT.45743347._002709.pool.root.1
[2025-07-28 01:00:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:26 start_atlas.sh
[2025-07-28 01:00:24] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:26 shared
[2025-07-28 01:00:24] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 23:26 input.tar.gz
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:26 boinc_lockfile
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas      2561 Jul 27 23:26 pandaJob.out
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas    980117 Jul 27 23:26 agis_schedconf.cvmfs.json
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:26 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:00:24] drwx------. 4 boincer umatlas      4096 Jul 27 23:26 pilot3
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas      6943 Jul 28 00:57 init_data.xml
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas       530 Jul 28 00:59 boinc_task_state.xml
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas 211906485 Jul 28 00:59 HITS.45743349._048947.pool.root.1
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas        95 Jul 28 00:59 pilot_heartbeat.json
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas      1045 Jul 28 00:59 memory_monitor_summary.json
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas    304122 Jul 28 00:59 log.45743349._048947.job.log.tgz.1
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas      7774 Jul 28 00:59 heartbeat.json
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas        27 Jul 28 01:00 wrapper_checkpoint.txt
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas       823 Jul 28 01:00 pilotlog.txt
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 01:00 boinc_mmap_file
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas    535328 Jul 28 01:00 log.45743349._048947.job.log.1
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas       357 Jul 28 01:00 output.list
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas       620 Jul 28 01:00 runtime_log
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas    860160 Jul 28 01:00 result.tar.gz
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas      8660 Jul 28 01:00 runtime_log.err
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas       652 Jul 28 01:00 6FIKDm8OG07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpMVLDml41Nln.diag
[2025-07-28 01:00:24] -rw-r--r--. 1 boincer umatlas     21964 Jul 28 01:00 stderr.txt
[2025-07-28 01:00:24] HITS file was successfully produced:
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas 211906485 Jul 28 00:59 shared/HITS.pool.root.1
[2025-07-28 01:00:24]  *** Contents of shared directory: ***
[2025-07-28 01:00:24] total 433576
[2025-07-28 01:00:24] -rw-r--r--. 2 boincer umatlas 230645341 Jul 27 23:26 ATLAS.root_0
[2025-07-28 01:00:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:26 start_atlas.sh
[2025-07-28 01:00:24] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 23:26 input.tar.gz
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas 211906485 Jul 28 00:59 HITS.pool.root.1
[2025-07-28 01:00:24] -rw-------. 1 boincer umatlas    860160 Jul 28 01:00 result.tar.gz
01:00:26 (3254273): run_atlas exited; CPU time 39521.074194
01:00:26 (3254273): called boinc_finish(0)

</stderr_txt>
]]>

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