Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:49:28 (1012385): wrapper (7.7.26015): starting
19:49:28 (1012385): wrapper: running run_atlas (--nthreads 4)
[2025-07-28 19:49:28] Arguments: --nthreads 4
[2025-07-28 19:49:28] Threads: 4
[2025-07-28 19:49:28] Checking for CVMFS
[2025-07-28 19:49:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 19:49:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 19:49:28] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 19:49:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 19:49:28] 2.9.2.0 961161 163 56496 148857 0 57 36257015 36864001 0 130560 0 133799 99.978 9354 6500 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 19:49:28] CVMFS is ok
[2025-07-28 19:49:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 19:49:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 19:49:28] Further information can be found at the LHC@home message board.
[2025-07-28 19:49:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 19:49:28] Checking for apptainer binary...
[2025-07-28 19:49:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 19:49:28] Running /usr/bin/apptainer --version
[2025-07-28 19:49:28] apptainer version 1.4.1-1.1
[2025-07-28 19:49:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 19:49:28] thA383a
[2025-07-28 19:49:28] apptainer works
[2025-07-28 19:49:28] Set ATHENA_PROC_NUMBER=4
[2025-07-28 19:49:28] Set ATHENA_CORE_NUMBER=4
[2025-07-28 19:49:28] Starting ATLAS job with PandaID=6748075876
[2025-07-28 19:49:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 21:15:49]  *** The last 200 lines of the pilot log: ***
[2025-07-28 21:15:49]  mtime=0
[2025-07-28 21:15:49]  protocol_id=None
[2025-07-28 21:15:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 21:15:49]  replicas=None
[2025-07-28 21:15:49]  scope=mc23_13p6TeV
[2025-07-28 21:15:49]  status=None
[2025-07-28 21:15:49]  status_code=0
[2025-07-28 21:15:49]  storage_token=
[2025-07-28 21:15:49]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6748075876/log.45743349._055571.job.log.tgz.1
[2025-07-28 21:15:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/fd/log.45743349._055571.job.log.tgz.1
[2025-07-28 21:15:49]  workdir=None
[2025-07-28 21:15:49] ]
[2025-07-28 21:15:49] 2025-07-28 19:15:09,391 | INFO     | transferring file log.45743349._055571.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6748075876/log.45743349._055571.job.log.tgz.1 to /local/data/boinc/
[2025-07-28 21:15:49] 2025-07-28 19:15:09,391 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6748075876/log.45743349._055571.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0555
[2025-07-28 21:15:49] 2025-07-28 19:15:09,409 | INFO     | adding to output.list: log.45743349._055571.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/fd/log.45743349._055571.job.log.tg
[2025-07-28 21:15:49] 2025-07-28 19:15:09,410 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 21:15:49] 2025-07-28 19:15:09,410 | INFO     | summary of transferred files:
[2025-07-28 21:15:49] 2025-07-28 19:15:09,410 | INFO     |  -- lfn=log.45743349._055571.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 21:15:49] 2025-07-28 19:15:09,410 | INFO     | stage-out finished correctly
[2025-07-28 21:15:49] 2025-07-28 19:15:11,954 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 21:15:49] 2025-07-28 19:15:12,997 | INFO     | job 6748075876 has state=finished
[2025-07-28 21:15:49] 2025-07-28 19:15:12,997 | INFO     | preparing for final server update for job 6748075876 in state='finished'
[2025-07-28 21:15:49] 2025-07-28 19:15:12,997 | INFO     | this job has now completed (state=finished)
[2025-07-28 21:15:49] 2025-07-28 19:15:12,997 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 21:15:49] 2025-07-28 19:15:12,997 | INFO     | log transfer has been attempted: DONE
[2025-07-28 21:15:49] 2025-07-28 19:15:12,997 | INFO     | job 6748075876 has finished - writing final server update
[2025-07-28 21:15:49] 2025-07-28 19:15:12,998 | INFO     | total number of processed events: 400 (read)
[2025-07-28 21:15:49] 2025-07-28 19:15:12,998 | INFO     | executing command: lscpu
[2025-07-28 21:15:49] 2025-07-28 19:15:13,020 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 21:15:49] 2025-07-28 19:15:14,640 | WARNING  | process 1022745 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 21:15:49] 2025-07-28 19:15:14,640 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6748075876/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 21:15:49] 2025-07-28 19:15:14,681 | INFO     | number of running child processes to parent process 1022745: 1
[2025-07-28 21:15:49] 2025-07-28 19:15:14,681 | INFO     | maximum number of monitored processes: 6
[2025-07-28 21:15:49] 2025-07-28 19:15:17,184 | INFO     | monitor loop #395: job 0:6748075876 is in state 'finished'
[2025-07-28 21:15:49] 2025-07-28 19:15:17,184 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 21:15:49] 2025-07-28 19:15:17,910 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 21:15:49] 2025-07-28 19:15:17,912 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3143.9391250000003
[2025-07-28 21:15:49] 2025-07-28 19:15:17,913 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6748075876/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 21:15:49] 2025-07-28 19:15:17,913 | INFO     | extracted standard info from prmon json
[2025-07-28 21:15:49] 2025-07-28 19:15:17,913 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 21:15:49] 2025-07-28 19:15:17,913 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 21:15:49] 2025-07-28 19:15:17,914 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 21:15:49] 2025-07-28 19:15:17,914 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 21:15:49] 2025-07-28 19:15:17,914 | INFO     | fitting pss+swap vs Time
[2025-07-28 21:15:49] 2025-07-28 19:15:17,914 | INFO     | sum of square deviations: 141539398.0
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | sum of deviations: -6713033774.0
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | mean x: 1753727623.0
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | mean y: 2467508.5974025973
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | -- intersect: 83179539970.04547
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | intersect: 83179539970.04547
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | chi2: 0.14202635046166645
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | -- intersect: 83179539970.04547
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | current memory leak: -47.43 B/s (using 77 data points, chi2=0.14)
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | could have reported an average CPU frequency of 3615 MHz (6 samples)
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | ..............................
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | . Timing measurements:
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | . get job = 0 s
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | . initial setup = 1 s
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | . payload setup = 5 s
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | . stage-in = 0 s
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | . payload execution = 5110 s
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | . stage-out = 0 s
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | . log creation = 0 s
[2025-07-28 21:15:49] 2025-07-28 19:15:17,915 | INFO     | ..............................
[2025-07-28 21:15:49] 2025-07-28 19:15:17,956 | INFO     | 
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | job summary report
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | --------------------------------------------------
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | PanDA job id: 6748075876
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | task id: 45743349
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | errors: (none)
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | pilot state: finished 
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | transexitcode: 0
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | exeerrorcode: 0
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | exeerrordiag: 
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | exitcode: 0
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | exitmsg: OK
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | cpuconsumptiontime: 19338 s
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | nevents: 400
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | neventsw: 0
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | pid: 1022745
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | pgrp: 1022745
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | corecount: 4
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | event service: False
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | sizes: {0: 2391857, 3: 2392119, 11: 2392147, 5118: 2418739, 5119: 2427743, 5121: 2427799, 5127: 2428121}
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | --------------------------------------------------
[2025-07-28 21:15:49] 2025-07-28 19:15:17,957 | INFO     | 
[2025-07-28 21:15:49] 2025-07-28 19:15:17,958 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 21:15:49] 2025-07-28 19:15:17,976 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,976 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,976 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,976 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,976 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,976 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,976 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | job 6748075876 has completed (purged errors)
[2025-07-28 21:15:49] 2025-07-28 19:15:17,977 | INFO     | overall cleanup function is called
[2025-07-28 21:15:49] 2025-07-28 19:15:18,984 | INFO     | --- collectZombieJob: --- 10, [1022745]
[2025-07-28 21:15:49] 2025-07-28 19:15:18,984 | INFO     | zombie collector waiting for pid 1022745
[2025-07-28 21:15:49] 2025-07-28 19:15:18,984 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 21:15:49] 2025-07-28 19:15:18,985 | INFO     | collected zombie processes
[2025-07-28 21:15:49] 2025-07-28 19:15:18,985 | INFO     | will attempt to kill all subprocesses of pid=1022745
[2025-07-28 21:15:49] 2025-07-28 19:15:19,029 | INFO     | process IDs to be killed: [1022745] (in reverse order)
[2025-07-28 21:15:49] 2025-07-28 19:15:19,062 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 21:15:49] 2025-07-28 19:15:19,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 21:15:49] 2025-07-28 19:15:19,064 | INFO     | did not find any defunct processes belonging to 1022745
[2025-07-28 21:15:49] 2025-07-28 19:15:19,065 | INFO     | did not find any defunct processes belonging to 1022745
[2025-07-28 21:15:49] 2025-07-28 19:15:19,065 | INFO     | ready for new job
[2025-07-28 21:15:49] 2025-07-28 19:15:19,065 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 21:15:49] 2025-07-28 19:15:19,066 | INFO     | ***************************************
[2025-07-28 21:15:49] 2025-07-28 19:15:19,066 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 21:15:49] 2025-07-28 19:15:19,066 | INFO     | ***************************************
[2025-07-28 21:15:49] 2025-07-28 19:15:19,066 | INFO     | 
[2025-07-28 21:15:49] 2025-07-28 19:15:19,066 | INFO     | architecture information:
[2025-07-28 21:15:49] 2025-07-28 19:15:19,067 | INFO     | executing command: cat /etc/os-release
[2025-07-28 21:15:49] 2025-07-28 19:15:19,081 | INFO     | cat /etc/os-release:
[2025-07-28 21:15:49] NAME="CentOS Linux"
[2025-07-28 21:15:49] VERSION="7 (Core)"
[2025-07-28 21:15:49] ID="centos"
[2025-07-28 21:15:49] ID_LIKE="rhel fedora"
[2025-07-28 21:15:49] VERSION_ID="7"
[2025-07-28 21:15:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 21:15:49] ANSI_COLOR="0;31"
[2025-07-28 21:15:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 21:15:49] HOME_URL="https://www.centos.org/"
[2025-07-28 21:15:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 21:15:49] 
[2025-07-28 21:15:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 21:15:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 21:15:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 21:15:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 21:15:49] 
[2025-07-28 21:15:49] 2025-07-28 19:15:19,081 | INFO     | ***************************************
[2025-07-28 21:15:49] 2025-07-28 19:15:19,584 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 21:15:49] 2025-07-28 19:15:19,600 | INFO     | sufficient remaining disk space (220360343552 B)
[2025-07-28 21:15:49] 2025-07-28 19:15:19,601 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 21:15:49] 2025-07-28 19:15:19,601 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 21:15:49] 2025-07-28 19:15:19,601 | INFO     | update_server=False
[2025-07-28 21:15:49] 2025-07-28 19:15:19,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 21:15:49] 2025-07-28 19:15:19,601 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 21:15:49] 2025-07-28 19:15:19,687 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 21:15:49] 2025-07-28 19:15:19,688 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 21:15:49] 2025-07-28 19:15:19,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 21:15:49] 2025-07-28 19:15:19,688 | INFO     | will abort loop
[2025-07-28 21:15:49] 2025-07-28 19:15:19,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 21:15:49] 2025-07-28 19:15:20,078 | INFO     | all data control threads have been joined
[2025-07-28 21:15:49] 2025-07-28 19:15:20,478 | INFO     | all job control threads have been joined
[2025-07-28 21:15:49] 2025-07-28 19:15:20,579 | INFO     | all payload control threads have been joined
[2025-07-28 21:15:49] 2025-07-28 19:15:20,606 | INFO     | [job] queue monitor thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:20,607 | INFO     | [job] retrieve thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:20,693 | INFO     | [job] job monitor thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:20,822 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:20,975 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:21,065 | INFO     | [payload] failed_post thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:21,084 | INFO     | [data] control thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:21,169 | INFO     | [job] validate thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:21,238 | INFO     | [payload] validate_post thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:21,326 | INFO     | [data] copytool_in thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:21,484 | INFO     | [job] control thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:21,584 | INFO     | [payload] control thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:21,971 | INFO     | [data] copytool_out thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:22,004 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:22,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 21:15:49] 2025-07-28 19:15:26,515 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:30,304 | INFO     | job.realtimelogging is not enabled
[2025-07-28 21:15:49] 2025-07-28 19:15:31,310 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 21:15:49] 2025-07-28 19:15:32,349 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139714013411136)>', '<ExcThread(monitor, started 139712970864384)>']
[2025-07-28 21:15:49] 2025-07-28 19:15:37,375 | INFO     | all workflow threads have been joined
[2025-07-28 21:15:49] 2025-07-28 19:15:37,375 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 21:15:49] 2025-07-28 19:15:37,375 | INFO     | traces error code: 0
[2025-07-28 21:15:49] 2025-07-28 19:15:37,375 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 21:15:49] 2025-07-28 19:15:49,192 | INFO     | PID=1016113 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 21:15:49] 2025-07-28 19:15:49,193 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 21:15:49] 2025-07-28 19:15:49,193 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 21:15:49] 2025-07-28 19:15:49,193 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 21:15:49] 2025-07-28 19:15:49,193 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 21:15:49] 2025-07-28 19:15:49,193 | INFO     | [monitor] control thread has ended
[2025-07-28 21:15:49] 2025-07-28 19:15:49,271 [wrapper] ==== pilot stdout END ====
[2025-07-28 21:15:49] 2025-07-28 19:15:49,275 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 21:15:49] 2025-07-28 19:15:49,279 [wrapper] pilotpid: 1016113
[2025-07-28 21:15:49] 2025-07-28 19:15:49,284 [wrapper] Pilot exit status: 0
[2025-07-28 21:15:49] 2025-07-28 19:15:49,296 [wrapper] pandaids: 6748075876
[2025-07-28 21:15:49] 2025-07-28 19:15:49,319 [wrapper] cleanup supervisor_pilot 1035015 1016114
[2025-07-28 21:15:49] 2025-07-28 19:15:49,323 [wrapper] Test setup, not cleaning
[2025-07-28 21:15:49] 2025-07-28 19:15:49,327 [wrapper] apfmon messages muted
[2025-07-28 21:15:49] 2025-07-28 19:15:49,331 [wrapper] ==== wrapper stdout END ====
[2025-07-28 21:15:49] 2025-07-28 19:15:49,336 [wrapper] ==== wrapper stderr END ====
[2025-07-28 21:15:49]  *** Error codes and diagnostics ***
[2025-07-28 21:15:49]     "exeErrorCode": 0,
[2025-07-28 21:15:49]     "exeErrorDiag": "",
[2025-07-28 21:15:49]     "pilotErrorCode": 0,
[2025-07-28 21:15:49]     "pilotErrorDiag": "",
[2025-07-28 21:15:49]  *** Listing of results directory ***
[2025-07-28 21:15:49] total 439936
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc    530466 Jul 27 22:27 pilot3.tar.gz
[2025-07-28 21:15:49] -rwx------ 1 boinc boinc     36292 Jul 27 22:41 runpilot2-wrapper.sh
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc      5112 Jul 27 22:41 queuedata.json
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc       100 Jul 28 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 21:15:49] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 19:49 run_atlas
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc       105 Jul 28 19:49 job.xml
[2025-07-28 21:15:49] -rw-r--r-- 2 boinc boinc 230645912 Jul 28 19:49 EVNT.45743347._000960.pool.root.1
[2025-07-28 21:15:49] -rw-r--r-- 2 boinc boinc    542886 Jul 28 19:49 input.tar.gz
[2025-07-28 21:15:49] -rw-r--r-- 2 boinc boinc     15095 Jul 28 19:49 start_atlas.sh
[2025-07-28 21:15:49] drwxrwx--x 2 boinc boinc      4096 Jul 28 19:49 shared
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc         0 Jul 28 19:49 boinc_setup_complete
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc      6380 Jul 28 19:49 init_data.xml
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc         0 Jul 28 19:49 boinc_lockfile
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc      2560 Jul 28 19:49 pandaJob.out
[2025-07-28 21:15:49] -rw------- 1 boinc boinc    977348 Jul 28 19:49 agis_schedconf.cvmfs.json
[2025-07-28 21:15:49] -rw------- 1 boinc boinc   1589827 Jul 28 19:49 agis_ddmendpoints.agis.ALL.json
[2025-07-28 21:15:49] drwx------ 4 boinc boinc      4096 Jul 28 19:49 pilot3
[2025-07-28 21:15:49] -rw------- 1 boinc boinc 214500466 Jul 28 21:14 HITS.45743349._055571.pool.root.1
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc       529 Jul 28 21:14 boinc_task_state.xml
[2025-07-28 21:15:49] -rw------- 1 boinc boinc        95 Jul 28 21:15 pilot_heartbeat.json
[2025-07-28 21:15:49] -rw------- 1 boinc boinc      1024 Jul 28 21:15 memory_monitor_summary.json
[2025-07-28 21:15:49] -rw------- 1 boinc boinc    236679 Jul 28 21:15 log.45743349._055571.job.log.tgz.1
[2025-07-28 21:15:49] -rw------- 1 boinc boinc      7763 Jul 28 21:15 heartbeat.json
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc        27 Jul 28 21:15 wrapper_checkpoint.txt
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc      8192 Jul 28 21:15 boinc_mmap_file
[2025-07-28 21:15:49] -rw------- 1 boinc boinc       747 Jul 28 21:15 pilotlog.txt
[2025-07-28 21:15:49] -rw------- 1 boinc boinc    499199 Jul 28 21:15 log.45743349._055571.job.log.1
[2025-07-28 21:15:49] -rw------- 1 boinc boinc       357 Jul 28 21:15 output.list
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc       620 Jul 28 21:15 runtime_log
[2025-07-28 21:15:49] -rw------- 1 boinc boinc    757760 Jul 28 21:15 result.tar.gz
[2025-07-28 21:15:49] -rw------- 1 boinc boinc       659 Jul 28 21:15 tKQLDm3MN07n9Rq4apOajLDm4fhM0noT9bVof3QYDmt62KDmkOff9m.diag
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc      8739 Jul 28 21:15 runtime_log.err
[2025-07-28 21:15:49] -rw-r--r-- 1 boinc boinc     21707 Jul 28 21:15 stderr.txt
[2025-07-28 21:15:49] HITS file was successfully produced:
[2025-07-28 21:15:49] -rw------- 1 boinc boinc 214500466 Jul 28 21:14 shared/HITS.pool.root.1
[2025-07-28 21:15:49]  *** Contents of shared directory: ***
[2025-07-28 21:15:49] total 436016
[2025-07-28 21:15:49] -rw-r--r-- 2 boinc boinc 230645912 Jul 28 19:49 ATLAS.root_0
[2025-07-28 21:15:49] -rw-r--r-- 2 boinc boinc    542886 Jul 28 19:49 input.tar.gz
[2025-07-28 21:15:49] -rw-r--r-- 2 boinc boinc     15095 Jul 28 19:49 start_atlas.sh
[2025-07-28 21:15:49] -rw------- 1 boinc boinc 214500466 Jul 28 21:14 HITS.pool.root.1
[2025-07-28 21:15:49] -rw------- 1 boinc boinc    757760 Jul 28 21:15 result.tar.gz
21:15:51 (1012385): run_atlas exited; CPU time 19352.474335
21:15:51 (1012385): called boinc_finish(0)

</stderr_txt>
]]>

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