Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:47:10 (1553457): wrapper (7.7.26015): starting
23:47:10 (1553457): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 23:47:10] Arguments: --nthreads 8
[2025-07-27 23:47:10] Threads: 8
[2025-07-27 23:47:10] Checking for CVMFS
[2025-07-27 23:47:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:47:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:47:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:47:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:47:11] 2.13.1.0 1630706 13850 224340 148834 0 630 39336010 40960001 15391 16776704 0 56650778 99.688 90945616 39276 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 23:47:11] CVMFS is ok
[2025-07-27 23:47:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:47:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:47:11] Further information can be found at the LHC@home message board.
[2025-07-27 23:47:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:47:11] Checking for apptainer binary...
[2025-07-27 23:47:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:47:11] Running /usr/bin/apptainer --version
[2025-07-27 23:47:11] apptainer version 1.4.1-1.el9
[2025-07-27 23:47:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:47:11] c-212-16.aglt2.org
[2025-07-27 23:47:11] apptainer works
[2025-07-27 23:47:11] Set ATHENA_PROC_NUMBER=8
[2025-07-27 23:47:11] Set ATHENA_CORE_NUMBER=8
[2025-07-27 23:47:11] Starting ATLAS job with PandaID=6747577544
[2025-07-27 23:47:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:18:42]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:18:42]  protocol_id=None
[2025-07-28 01:18:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 01:18:42]  replicas=None
[2025-07-28 01:18:42]  scope=mc23_13p6TeV
[2025-07-28 01:18:42]  status=None
[2025-07-28 01:18:42]  status_code=0
[2025-07-28 01:18:42]  storage_token=
[2025-07-28 01:18:42]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747577544/log.45743349._053059.job.log.tgz.1
[2025-07-28 01:18:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/73/74/log.45743349._053059.job.log.tgz.1
[2025-07-28 01:18:42]  workdir=None
[2025-07-28 01:18:42] ]
[2025-07-28 01:18:42] 2025-07-28 05:17:59,667 | INFO     | transferring file log.45743349._053059.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747577544/log.45743349._053059.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 01:18:42] 2025-07-28 05:17:59,667 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747577544/log.45743349._053059.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._053059.job
[2025-07-28 01:18:42] 2025-07-28 05:17:59,689 | INFO     | adding to output.list: log.45743349._053059.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/73/74/log.45743349._053059.job.log.tg
[2025-07-28 01:18:42] 2025-07-28 05:17:59,690 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 01:18:42] 2025-07-28 05:17:59,690 | INFO     | summary of transferred files:
[2025-07-28 01:18:42] 2025-07-28 05:17:59,690 | INFO     |  -- lfn=log.45743349._053059.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 01:18:42] 2025-07-28 05:17:59,690 | INFO     | stage-out finished correctly
[2025-07-28 01:18:42] 2025-07-28 05:18:01,166 | INFO     | monitor loop #386: job 0:6747577544 is in state 'finished'
[2025-07-28 01:18:42] 2025-07-28 05:18:01,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:18:42] 2025-07-28 05:18:01,976 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 01:18:42] 2025-07-28 05:18:02,438 | INFO     | job 6747577544 has state=finished
[2025-07-28 01:18:42] 2025-07-28 05:18:02,438 | INFO     | preparing for final server update for job 6747577544 in state='finished'
[2025-07-28 01:18:42] 2025-07-28 05:18:02,440 | INFO     | this job has now completed (state=finished)
[2025-07-28 01:18:42] 2025-07-28 05:18:02,440 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 01:18:42] 2025-07-28 05:18:02,440 | INFO     | log transfer has been attempted: DONE
[2025-07-28 01:18:42] 2025-07-28 05:18:02,441 | INFO     | job 6747577544 has finished - writing final server update
[2025-07-28 01:18:42] 2025-07-28 05:18:02,441 | INFO     | total number of processed events: 400 (read)
[2025-07-28 01:18:42] 2025-07-28 05:18:02,442 | INFO     | executing command: lscpu
[2025-07-28 01:18:42] 2025-07-28 05:18:02,523 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 01:18:42] 2025-07-28 05:18:03,671 | INFO     | monitor loop #387: job 0:6747577544 is in state 'finished'
[2025-07-28 01:18:42] 2025-07-28 05:18:03,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:18:42] 2025-07-28 05:18:06,175 | INFO     | monitor loop #388: job 0:6747577544 is in state 'finished'
[2025-07-28 01:18:42] 2025-07-28 05:18:06,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:18:42] 2025-07-28 05:18:08,679 | INFO     | monitor loop #389: job 0:6747577544 is in state 'finished'
[2025-07-28 01:18:42] 2025-07-28 05:18:08,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:18:42] 2025-07-28 05:18:08,963 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 01:18:42] 2025-07-28 05:18:08,982 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3148.3320312500005
[2025-07-28 01:18:42] 2025-07-28 05:18:08,996 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747577544/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:18:42] 2025-07-28 05:18:08,997 | INFO     | extracted standard info from prmon json
[2025-07-28 01:18:42] 2025-07-28 05:18:08,997 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:18:42] 2025-07-28 05:18:08,998 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:18:42] 2025-07-28 05:18:08,998 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:18:42] 2025-07-28 05:18:08,998 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:18:42] 2025-07-28 05:18:09,000 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:18:42] 2025-07-28 05:18:09,000 | INFO     | sum of square deviations: 170944600.5
[2025-07-28 01:18:42] 2025-07-28 05:18:09,000 | INFO     | sum of deviations: -6319932449.999998
[2025-07-28 01:18:42] 2025-07-28 05:18:09,000 | INFO     | mean x: 1753677256.5
[2025-07-28 01:18:42] 2025-07-28 05:18:09,000 | INFO     | mean y: 2583239.1219512196
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | -- intersect: 64837165716.50954
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | intersect: 64837165716.50954
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | chi2: 0.03897660760784816
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | -- intersect: 64837165716.50954
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | current memory leak: -36.97 B/s (using 82 data points, chi2=0.04)
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | could have reported an average CPU frequency of 3160 MHz (6 samples)
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | ..............................
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | . Timing measurements:
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | . get job = 0 s
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | . initial setup = 2 s
[2025-07-28 01:18:42] 2025-07-28 05:18:09,001 | INFO     | . payload setup = 10 s
[2025-07-28 01:18:42] 2025-07-28 05:18:09,002 | INFO     | . stage-in = 0 s
[2025-07-28 01:18:42] 2025-07-28 05:18:09,002 | INFO     | . payload execution = 5401 s
[2025-07-28 01:18:42] 2025-07-28 05:18:09,002 | INFO     | . stage-out = 0 s
[2025-07-28 01:18:42] 2025-07-28 05:18:09,002 | INFO     | . log creation = 0 s
[2025-07-28 01:18:42] 2025-07-28 05:18:09,002 | INFO     | ..............................
[2025-07-28 01:18:42] 2025-07-28 05:18:09,479 | INFO     | 
[2025-07-28 01:18:42] 2025-07-28 05:18:09,479 | INFO     | job summary report
[2025-07-28 01:18:42] 2025-07-28 05:18:09,479 | INFO     | --------------------------------------------------
[2025-07-28 01:18:42] 2025-07-28 05:18:09,479 | INFO     | PanDA job id: 6747577544
[2025-07-28 01:18:42] 2025-07-28 05:18:09,479 | INFO     | task id: 45743349
[2025-07-28 01:18:42] 2025-07-28 05:18:09,479 | INFO     | errors: (none)
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | pilot state: finished 
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | transexitcode: 0
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | exeerrorcode: 0
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | exeerrordiag: 
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | exitcode: 0
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | exitmsg: OK
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | cpuconsumptiontime: 36834 s
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | nevents: 400
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | neventsw: 0
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | pid: 1568858
[2025-07-28 01:18:42] 2025-07-28 05:18:09,480 | INFO     | pgrp: 1568858
[2025-07-28 01:18:42] 2025-07-28 05:18:09,481 | INFO     | corecount: 8
[2025-07-28 01:18:42] 2025-07-28 05:18:09,481 | INFO     | event service: False
[2025-07-28 01:18:42] 2025-07-28 05:18:09,481 | INFO     | sizes: {0: 2397475, 7: 2397737, 11: 2397765, 5415: 2424254, 5416: 2433252, 5418: 2433308, 5425: 2433630}
[2025-07-28 01:18:42] 2025-07-28 05:18:09,481 | INFO     | --------------------------------------------------
[2025-07-28 01:18:42] 2025-07-28 05:18:09,481 | INFO     | 
[2025-07-28 01:18:42] 2025-07-28 05:18:09,481 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-28 01:18:42] 2025-07-28 05:18:09,507 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,508 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,509 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,509 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,509 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,509 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:18:42] 2025-07-28 05:18:09,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,509 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:18:42] 2025-07-28 05:18:09,509 | INFO     | job 6747577544 has completed (purged errors)
[2025-07-28 01:18:42] 2025-07-28 05:18:09,509 | INFO     | overall cleanup function is called
[2025-07-28 01:18:42] 2025-07-28 05:18:10,518 | INFO     | --- collectZombieJob: --- 10, [1568858]
[2025-07-28 01:18:42] 2025-07-28 05:18:10,518 | INFO     | zombie collector waiting for pid 1568858
[2025-07-28 01:18:42] 2025-07-28 05:18:10,518 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:18:42] 2025-07-28 05:18:10,518 | INFO     | collected zombie processes
[2025-07-28 01:18:42] 2025-07-28 05:18:10,518 | INFO     | will attempt to kill all subprocesses of pid=1568858
[2025-07-28 01:18:42] 2025-07-28 05:18:10,909 | INFO     | process IDs to be killed: [1568858] (in reverse order)
[2025-07-28 01:18:42] 2025-07-28 05:18:11,050 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:18:42] 2025-07-28 05:18:11,050 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:18:42] 2025-07-28 05:18:11,068 | INFO     | did not find any defunct processes belonging to 1568858
[2025-07-28 01:18:42] 2025-07-28 05:18:11,086 | INFO     | did not find any defunct processes belonging to 1568858
[2025-07-28 01:18:42] 2025-07-28 05:18:11,086 | INFO     | ready for new job
[2025-07-28 01:18:42] 2025-07-28 05:18:11,086 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:18:42] 2025-07-28 05:18:11,088 | INFO     | ***************************************
[2025-07-28 01:18:42] 2025-07-28 05:18:11,088 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:18:42] 2025-07-28 05:18:11,088 | INFO     | ***************************************
[2025-07-28 01:18:42] 2025-07-28 05:18:11,088 | INFO     | 
[2025-07-28 01:18:42] 2025-07-28 05:18:11,093 | INFO     | architecture information:
[2025-07-28 01:18:42] 2025-07-28 05:18:11,093 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:18:42] 2025-07-28 05:18:11,112 | INFO     | cat /etc/os-release:
[2025-07-28 01:18:42] NAME="CentOS Linux"
[2025-07-28 01:18:42] VERSION="7 (Core)"
[2025-07-28 01:18:42] ID="centos"
[2025-07-28 01:18:42] ID_LIKE="rhel fedora"
[2025-07-28 01:18:42] VERSION_ID="7"
[2025-07-28 01:18:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:18:42] ANSI_COLOR="0;31"
[2025-07-28 01:18:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:18:42] HOME_URL="https://www.centos.org/"
[2025-07-28 01:18:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:18:42] 
[2025-07-28 01:18:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:18:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:18:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:18:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:18:42] 
[2025-07-28 01:18:42] 2025-07-28 05:18:11,112 | INFO     | ***************************************
[2025-07-28 01:18:42] 2025-07-28 05:18:11,616 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-28 01:18:42] 2025-07-28 05:18:11,635 | INFO     | sufficient remaining disk space (129448804352 B)
[2025-07-28 01:18:42] 2025-07-28 05:18:11,635 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:18:42] 2025-07-28 05:18:11,635 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:18:42] 2025-07-28 05:18:11,635 | INFO     | update_server=False
[2025-07-28 01:18:42] 2025-07-28 05:18:11,635 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:18:42] 2025-07-28 05:18:12,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:18:42] 2025-07-28 05:18:12,191 | INFO     | aborting loop
[2025-07-28 01:18:42] 2025-07-28 05:18:12,511 | INFO     | all data control threads have been joined
[2025-07-28 01:18:42] 2025-07-28 05:18:12,564 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:18:42] 2025-07-28 05:18:12,618 | INFO     | all job control threads have been joined
[2025-07-28 01:18:42] 2025-07-28 05:18:12,640 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:12,793 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:18:42] 2025-07-28 05:18:12,812 | INFO     | all payload control threads have been joined
[2025-07-28 01:18:42] 2025-07-28 05:18:12,827 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:12,978 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:12,980 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:13,197 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:13,343 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:13,366 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:13,516 | INFO     | [data] control thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:13,518 | INFO     | [job] validate thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:13,623 | INFO     | [job] control thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:13,817 | INFO     | [payload] control thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:13,848 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:14,089 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:18:42] 2025-07-28 05:18:14,798 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:15,094 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:16,571 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:22,084 | INFO     | job.realtimelogging is not enabled
[2025-07-28 01:18:42] 2025-07-28 05:18:23,089 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:18:42] 2025-07-28 05:18:23,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178698524480)>', '<ExcThread(monitor, started 140178068862720)>']
[2025-07-28 01:18:42] 2025-07-28 05:18:29,015 | INFO     | all workflow threads have been joined
[2025-07-28 01:18:42] 2025-07-28 05:18:29,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:18:42] 2025-07-28 05:18:29,016 | INFO     | traces error code: 0
[2025-07-28 01:18:42] 2025-07-28 05:18:29,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:18:42] 2025-07-28 05:18:41,735 | INFO     | PID=1558578 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:18:42] 2025-07-28 05:18:41,735 | INFO     | .. there are 18 such processes running
[2025-07-28 01:18:42] 2025-07-28 05:18:41,735 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:18:42] 2025-07-28 05:18:41,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:18:42] 2025-07-28 05:18:41,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:18:42] 2025-07-28 05:18:41,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:18:42] 2025-07-28 05:18:41,735 | INFO     | [monitor] control thread has ended
[2025-07-28 01:18:42] 2025-07-28 05:18:41,890 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:18:42] 2025-07-28 05:18:41,894 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:18:42] 2025-07-28 05:18:41,899 [wrapper] pilotpid: 1558578
[2025-07-28 01:18:42] 2025-07-28 05:18:41,904 [wrapper] Pilot exit status: 0
[2025-07-28 01:18:42] 2025-07-28 05:18:41,926 [wrapper] pandaids: 6747577544
[2025-07-28 01:18:42] 2025-07-28 05:18:42,022 [wrapper] cleanup supervisor_pilot 2347881 1558579
[2025-07-28 01:18:42] 2025-07-28 05:18:42,026 [wrapper] Test setup, not cleaning
[2025-07-28 01:18:42] 2025-07-28 05:18:42,028 [wrapper] apfmon messages muted
[2025-07-28 01:18:42] 2025-07-28 05:18:42,033 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:18:42] 2025-07-28 05:18:42,037 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:18:42]  *** Error codes and diagnostics ***
[2025-07-28 01:18:42]     "exeErrorCode": 0,
[2025-07-28 01:18:42]     "exeErrorDiag": "",
[2025-07-28 01:18:42]     "pilotErrorCode": 0,
[2025-07-28 01:18:42]     "pilotErrorDiag": "",
[2025-07-28 01:18:42]  *** Listing of results directory ***
[2025-07-28 01:18:42] total 356800
[2025-07-28 01:18:42] -rwx------. 1 boincer umatlas     36292 Jul 27 13:39 runpilot2-wrapper.sh
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:39 pilot3.tar.gz
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 13:39 queuedata.json
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:18:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:47 run_atlas
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:47 job.xml
[2025-07-28 01:18:42] -rw-r--r--. 2 boincer umatlas 148769012 Jul 27 23:47 EVNT.45743347._002895.pool.root.1
[2025-07-28 01:18:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:47 start_atlas.sh
[2025-07-28 01:18:42] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:47 shared
[2025-07-28 01:18:42] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 23:47 input.tar.gz
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:47 boinc_lockfile
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 23:47 pandaJob.out
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas    980117 Jul 27 23:47 agis_schedconf.cvmfs.json
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:47 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:18:42] drwx------. 4 boincer umatlas      4096 Jul 27 23:47 pilot3
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas      6944 Jul 28 01:11 init_data.xml
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas 211058059 Jul 28 01:17 HITS.45743349._053059.pool.root.1
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas       529 Jul 28 01:17 boinc_task_state.xml
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas      1032 Jul 28 01:17 memory_monitor_summary.json
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas    303247 Jul 28 01:17 log.45743349._053059.job.log.tgz.1
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas        95 Jul 28 01:18 pilot_heartbeat.json
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas      7778 Jul 28 01:18 heartbeat.json
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas        27 Jul 28 01:18 wrapper_checkpoint.txt
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 01:18 boinc_mmap_file
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas       823 Jul 28 01:18 pilotlog.txt
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas    523590 Jul 28 01:18 log.45743349._053059.job.log.1
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas       357 Jul 28 01:18 output.list
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas       620 Jul 28 01:18 runtime_log
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas    849920 Jul 28 01:18 result.tar.gz
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas      8660 Jul 28 01:18 runtime_log.err
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas       653 Jul 28 01:18 iQgNDmpWK07n9Rq4apOajLDm4fhM0noT9bVof3QYDmvq2KDmtLqYwm.diag
[2025-07-28 01:18:42] -rw-r--r--. 1 boincer umatlas     21826 Jul 28 01:18 stderr.txt
[2025-07-28 01:18:42] HITS file was successfully produced:
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas 211058059 Jul 28 01:17 shared/HITS.pool.root.1
[2025-07-28 01:18:42]  *** Contents of shared directory: ***
[2025-07-28 01:18:42] total 352784
[2025-07-28 01:18:42] -rw-r--r--. 2 boincer umatlas 148769012 Jul 27 23:47 ATLAS.root_0
[2025-07-28 01:18:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:47 start_atlas.sh
[2025-07-28 01:18:42] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 23:47 input.tar.gz
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas 211058059 Jul 28 01:17 HITS.pool.root.1
[2025-07-28 01:18:42] -rw-------. 1 boincer umatlas    849920 Jul 28 01:18 result.tar.gz
01:18:44 (1553457): run_atlas exited; CPU time 36988.962876
01:18:44 (1553457): called boinc_finish(0)

</stderr_txt>
]]>

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