Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:14:58 (3206777): wrapper (7.7.26015): starting
23:14:58 (3206777): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 23:14:58] Arguments: --nthreads 8
[2025-07-27 23:14:58] Threads: 8
[2025-07-27 23:14:58] Checking for CVMFS
[2025-07-27 23:14:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:14:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:14:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:14:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:14:59] 2.13.1.0 5036 14870 261844 148834 3 3 35878085 40960000 10243 16776704 0 80649415 99.781 68363606 33635 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 23:14:59] CVMFS is ok
[2025-07-27 23:14:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:14:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:14:59] Further information can be found at the LHC@home message board.
[2025-07-27 23:14:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:14:59] Checking for apptainer binary...
[2025-07-27 23:14:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:14:59] Running /usr/bin/apptainer --version
[2025-07-27 23:14:59] apptainer version 1.4.1-1.el9
[2025-07-27 23:14:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:14:59] c-212-2.aglt2.org
[2025-07-27 23:14:59] apptainer works
[2025-07-27 23:14:59] Set ATHENA_PROC_NUMBER=8
[2025-07-27 23:14:59] Set ATHENA_CORE_NUMBER=8
[2025-07-27 23:14:59] Starting ATLAS job with PandaID=6747923663
[2025-07-27 23:14:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:42:40]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:42:40]  lfn=log.45759912._000127.job.log.tgz.1
[2025-07-28 00:42:40]  mtime=0
[2025-07-28 00:42:40]  protocol_id=None
[2025-07-28 00:42:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 00:42:40]  replicas=None
[2025-07-28 00:42:40]  scope=mc23_13p6TeV
[2025-07-28 00:42:40]  status=None
[2025-07-28 00:42:40]  status_code=0
[2025-07-28 00:42:40]  storage_token=
[2025-07-28 00:42:40]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6747923663/log.45759912._000127.job.log.tgz.1
[2025-07-28 00:42:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/5f/log.45759912._000127.job.log.tgz.1
[2025-07-28 00:42:40]  workdir=None
[2025-07-28 00:42:40] ]
[2025-07-28 00:42:40] 2025-07-28 04:42:03,510 | INFO     | transferring file log.45759912._000127.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6747923663/log.45759912._000127.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 00:42:40] 2025-07-28 04:42:03,510 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6747923663/log.45759912._000127.job.log.tgz.1 /tmp/boinchome/slots/3/log.45759912._000127.job
[2025-07-28 00:42:40] 2025-07-28 04:42:03,531 | INFO     | adding to output.list: log.45759912._000127.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/5f/log.45759912._000127.job.log.tg
[2025-07-28 00:42:40] 2025-07-28 04:42:03,532 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:42:40] 2025-07-28 04:42:03,532 | INFO     | summary of transferred files:
[2025-07-28 00:42:40] 2025-07-28 04:42:03,532 | INFO     |  -- lfn=log.45759912._000127.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:42:40] 2025-07-28 04:42:03,532 | INFO     | stage-out finished correctly
[2025-07-28 00:42:40] 2025-07-28 04:42:03,605 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:42:40] 2025-07-28 04:42:04,160 | INFO     | job 6747923663 has state=finished
[2025-07-28 00:42:40] 2025-07-28 04:42:04,161 | INFO     | preparing for final server update for job 6747923663 in state='finished'
[2025-07-28 00:42:40] 2025-07-28 04:42:04,161 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:42:40] 2025-07-28 04:42:04,161 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:42:40] 2025-07-28 04:42:04,161 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:42:40] 2025-07-28 04:42:04,161 | INFO     | job 6747923663 has finished - writing final server update
[2025-07-28 00:42:40] 2025-07-28 04:42:04,162 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:42:40] 2025-07-28 04:42:04,162 | INFO     | executing command: lscpu
[2025-07-28 00:42:40] 2025-07-28 04:42:04,169 | INFO     | monitor loop #384: job 0:6747923663 is in state 'finished'
[2025-07-28 00:42:40] 2025-07-28 04:42:04,170 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:42:40] 2025-07-28 04:42:04,222 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:42:40] 2025-07-28 04:42:06,673 | INFO     | monitor loop #385: job 0:6747923663 is in state 'finished'
[2025-07-28 00:42:40] 2025-07-28 04:42:06,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:42:40] 2025-07-28 04:42:07,805 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 00:42:40] 2025-07-28 04:42:07,811 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3274.401250000001
[2025-07-28 00:42:40] 2025-07-28 04:42:07,826 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6747923663/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:42:40] 2025-07-28 04:42:07,827 | INFO     | extracted standard info from prmon json
[2025-07-28 00:42:40] 2025-07-28 04:42:07,827 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:42:40] 2025-07-28 04:42:07,827 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:42:40] 2025-07-28 04:42:07,827 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:42:40] 2025-07-28 04:42:07,828 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:42:40] 2025-07-28 04:42:07,829 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:42:40] 2025-07-28 04:42:07,830 | INFO     | sum of square deviations: 147126479.5
[2025-07-28 00:42:40] 2025-07-28 04:42:07,830 | INFO     | sum of deviations: -4365915820.5
[2025-07-28 00:42:40] 2025-07-28 04:42:07,830 | INFO     | mean x: 1753675189.5
[2025-07-28 00:42:40] 2025-07-28 04:42:07,830 | INFO     | mean y: 2572604.6025641025
[2025-07-28 00:42:40] 2025-07-28 04:42:07,830 | INFO     | -- intersect: 52042139376.51316
[2025-07-28 00:42:40] 2025-07-28 04:42:07,831 | INFO     | intersect: 52042139376.51316
[2025-07-28 00:42:40] 2025-07-28 04:42:07,831 | INFO     | chi2: 0.0094926805145379
[2025-07-28 00:42:40] 2025-07-28 04:42:07,831 | INFO     | -- intersect: 52042139376.51316
[2025-07-28 00:42:40] 2025-07-28 04:42:07,831 | INFO     | current memory leak: -29.67 B/s (using 78 data points, chi2=0.01)
[2025-07-28 00:42:40] 2025-07-28 04:42:07,831 | INFO     | could have reported an average CPU frequency of 3293 MHz (6 samples)
[2025-07-28 00:42:40] 2025-07-28 04:42:07,832 | INFO     | ..............................
[2025-07-28 00:42:40] 2025-07-28 04:42:07,832 | INFO     | . Timing measurements:
[2025-07-28 00:42:40] 2025-07-28 04:42:07,832 | INFO     | . get job = 0 s
[2025-07-28 00:42:40] 2025-07-28 04:42:07,832 | INFO     | . initial setup = 2 s
[2025-07-28 00:42:40] 2025-07-28 04:42:07,832 | INFO     | . payload setup = 6 s
[2025-07-28 00:42:40] 2025-07-28 04:42:07,832 | INFO     | . stage-in = 0 s
[2025-07-28 00:42:40] 2025-07-28 04:42:07,832 | INFO     | . payload execution = 5187 s
[2025-07-28 00:42:40] 2025-07-28 04:42:07,832 | INFO     | . stage-out = 0 s
[2025-07-28 00:42:40] 2025-07-28 04:42:07,833 | INFO     | . log creation = 0 s
[2025-07-28 00:42:40] 2025-07-28 04:42:07,833 | INFO     | ..............................
[2025-07-28 00:42:40] 2025-07-28 04:42:07,910 | INFO     | 
[2025-07-28 00:42:40] 2025-07-28 04:42:07,911 | INFO     | job summary report
[2025-07-28 00:42:40] 2025-07-28 04:42:07,911 | INFO     | --------------------------------------------------
[2025-07-28 00:42:40] 2025-07-28 04:42:07,911 | INFO     | PanDA job id: 6747923663
[2025-07-28 00:42:40] 2025-07-28 04:42:07,911 | INFO     | task id: 45759912
[2025-07-28 00:42:40] 2025-07-28 04:42:07,911 | INFO     | errors: (none)
[2025-07-28 00:42:40] 2025-07-28 04:42:07,911 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:42:40] 2025-07-28 04:42:07,911 | INFO     | pilot state: finished 
[2025-07-28 00:42:40] 2025-07-28 04:42:07,912 | INFO     | transexitcode: 0
[2025-07-28 00:42:40] 2025-07-28 04:42:07,912 | INFO     | exeerrorcode: 0
[2025-07-28 00:42:40] 2025-07-28 04:42:07,912 | INFO     | exeerrordiag: 
[2025-07-28 00:42:40] 2025-07-28 04:42:07,912 | INFO     | exitcode: 0
[2025-07-28 00:42:40] 2025-07-28 04:42:07,912 | INFO     | exitmsg: OK
[2025-07-28 00:42:40] 2025-07-28 04:42:07,912 | INFO     | cpuconsumptiontime: 38615 s
[2025-07-28 00:42:40] 2025-07-28 04:42:07,912 | INFO     | nevents: 400
[2025-07-28 00:42:40] 2025-07-28 04:42:07,912 | INFO     | neventsw: 0
[2025-07-28 00:42:40] 2025-07-28 04:42:07,912 | INFO     | pid: 3217192
[2025-07-28 00:42:40] 2025-07-28 04:42:07,913 | INFO     | pgrp: 3217192
[2025-07-28 00:42:40] 2025-07-28 04:42:07,913 | INFO     | corecount: 8
[2025-07-28 00:42:40] 2025-07-28 04:42:07,913 | INFO     | event service: False
[2025-07-28 00:42:40] 2025-07-28 04:42:07,913 | INFO     | sizes: {0: 2397414, 4: 2397676, 11: 2397704, 5198: 2424095, 5199: 2433149, 5203: 2433287}
[2025-07-28 00:42:40] 2025-07-28 04:42:07,913 | INFO     | --------------------------------------------------
[2025-07-28 00:42:40] 2025-07-28 04:42:07,913 | INFO     | 
[2025-07-28 00:42:40] 2025-07-28 04:42:07,913 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-28 00:42:40] 2025-07-28 04:42:07,935 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,936 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,936 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,936 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,936 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,936 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,936 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,937 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,937 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,937 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,937 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,937 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,937 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,937 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,937 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,938 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:42:40] 2025-07-28 04:42:07,938 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,938 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:42:40] 2025-07-28 04:42:07,938 | INFO     | job 6747923663 has completed (purged errors)
[2025-07-28 00:42:40] 2025-07-28 04:42:07,938 | INFO     | overall cleanup function is called
[2025-07-28 00:42:40] 2025-07-28 04:42:08,047 | INFO     | PID=3210538 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:42:40] 2025-07-28 04:42:08,048 | INFO     | .. there are 9 such processes running
[2025-07-28 00:42:40] 2025-07-28 04:42:08,947 | INFO     | --- collectZombieJob: --- 10, [3217192]
[2025-07-28 00:42:40] 2025-07-28 04:42:08,947 | INFO     | zombie collector waiting for pid 3217192
[2025-07-28 00:42:40] 2025-07-28 04:42:08,947 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:42:40] 2025-07-28 04:42:08,948 | INFO     | collected zombie processes
[2025-07-28 00:42:40] 2025-07-28 04:42:08,948 | INFO     | will attempt to kill all subprocesses of pid=3217192
[2025-07-28 00:42:40] 2025-07-28 04:42:09,232 | INFO     | process IDs to be killed: [3217192] (in reverse order)
[2025-07-28 00:42:40] 2025-07-28 04:42:09,332 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:42:40] 2025-07-28 04:42:09,332 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:42:40] 2025-07-28 04:42:09,344 | INFO     | did not find any defunct processes belonging to 3217192
[2025-07-28 00:42:40] 2025-07-28 04:42:09,352 | INFO     | did not find any defunct processes belonging to 3217192
[2025-07-28 00:42:40] 2025-07-28 04:42:09,353 | INFO     | ready for new job
[2025-07-28 00:42:40] 2025-07-28 04:42:09,353 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:42:40] 2025-07-28 04:42:09,354 | INFO     | ***************************************
[2025-07-28 00:42:40] 2025-07-28 04:42:09,354 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:42:40] 2025-07-28 04:42:09,354 | INFO     | ***************************************
[2025-07-28 00:42:40] 2025-07-28 04:42:09,354 | INFO     | 
[2025-07-28 00:42:40] 2025-07-28 04:42:09,359 | INFO     | architecture information:
[2025-07-28 00:42:40] 2025-07-28 04:42:09,359 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:42:40] 2025-07-28 04:42:09,374 | INFO     | cat /etc/os-release:
[2025-07-28 00:42:40] NAME="CentOS Linux"
[2025-07-28 00:42:40] VERSION="7 (Core)"
[2025-07-28 00:42:40] ID="centos"
[2025-07-28 00:42:40] ID_LIKE="rhel fedora"
[2025-07-28 00:42:40] VERSION_ID="7"
[2025-07-28 00:42:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:42:40] ANSI_COLOR="0;31"
[2025-07-28 00:42:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:42:40] HOME_URL="https://www.centos.org/"
[2025-07-28 00:42:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:42:40] 
[2025-07-28 00:42:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:42:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:42:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:42:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:42:40] 
[2025-07-28 00:42:40] 2025-07-28 04:42:09,374 | INFO     | ***************************************
[2025-07-28 00:42:40] 2025-07-28 04:42:09,877 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-28 00:42:40] 2025-07-28 04:42:09,893 | INFO     | sufficient remaining disk space (125959143424 B)
[2025-07-28 00:42:40] 2025-07-28 04:42:09,893 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:42:40] 2025-07-28 04:42:09,893 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:42:40] 2025-07-28 04:42:09,894 | INFO     | update_server=False
[2025-07-28 00:42:40] 2025-07-28 04:42:09,894 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:42:40] 2025-07-28 04:42:09,894 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:42:40] 2025-07-28 04:42:09,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:42:40] 2025-07-28 04:42:09,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:42:40] 2025-07-28 04:42:10,181 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:42:40] 2025-07-28 04:42:10,182 | INFO     | aborting loop
[2025-07-28 00:42:40] 2025-07-28 04:42:10,420 | INFO     | all payload control threads have been joined
[2025-07-28 00:42:40] 2025-07-28 04:42:10,899 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:10,901 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:10,943 | INFO     | all data control threads have been joined
[2025-07-28 00:42:40] 2025-07-28 04:42:10,973 | INFO     | all job control threads have been joined
[2025-07-28 00:42:40] 2025-07-28 04:42:11,187 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:11,295 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:11,424 | INFO     | [payload] control thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:11,496 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:11,636 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:11,706 | INFO     | [job] validate thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:11,901 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:11,948 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:11,949 | INFO     | [data] control thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:11,979 | INFO     | [job] control thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:12,010 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:12,127 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:13,900 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:20,013 | INFO     | job.realtimelogging is not enabled
[2025-07-28 00:42:40] 2025-07-28 04:42:21,018 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:42:40] 2025-07-28 04:42:21,487 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140015271429952)>', '<ExcThread(monitor, started 140014633600768)>']
[2025-07-28 00:42:40] 2025-07-28 04:42:26,505 | INFO     | all workflow threads have been joined
[2025-07-28 00:42:40] 2025-07-28 04:42:26,505 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:42:40] 2025-07-28 04:42:26,505 | INFO     | traces error code: 0
[2025-07-28 00:42:40] 2025-07-28 04:42:26,506 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:42:40] 2025-07-28 04:42:40,425 | INFO     | PID=3210538 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:42:40] 2025-07-28 04:42:40,425 | INFO     | .. there are 9 such processes running
[2025-07-28 00:42:40] 2025-07-28 04:42:40,425 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:42:40] 2025-07-28 04:42:40,425 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:42:40] 2025-07-28 04:42:40,425 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:42:40] 2025-07-28 04:42:40,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:42:40] 2025-07-28 04:42:40,426 | INFO     | [monitor] control thread has ended
[2025-07-28 00:42:40] 2025-07-28 04:42:40,513 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:42:40] 2025-07-28 04:42:40,517 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:42:40] 2025-07-28 04:42:40,520 [wrapper] pilotpid: 3210538
[2025-07-28 00:42:40] 2025-07-28 04:42:40,522 [wrapper] Pilot exit status: 0
[2025-07-28 00:42:40] 2025-07-28 04:42:40,533 [wrapper] pandaids: 6747923663
[2025-07-28 00:42:40] 2025-07-28 04:42:40,604 [wrapper] cleanup supervisor_pilot 3476891 3210539
[2025-07-28 00:42:40] 2025-07-28 04:42:40,607 [wrapper] Test setup, not cleaning
[2025-07-28 00:42:40] 2025-07-28 04:42:40,609 [wrapper] apfmon messages muted
[2025-07-28 00:42:40] 2025-07-28 04:42:40,612 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:42:40] 2025-07-28 04:42:40,614 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:42:40]  *** Error codes and diagnostics ***
[2025-07-28 00:42:40]     "exeErrorCode": 0,
[2025-07-28 00:42:40]     "exeErrorDiag": "",
[2025-07-28 00:42:40]     "pilotErrorCode": 0,
[2025-07-28 00:42:40]     "pilotErrorDiag": "",
[2025-07-28 00:42:40]  *** Listing of results directory ***
[2025-07-28 00:42:40] total 401568
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:27 pilot3.tar.gz
[2025-07-28 00:42:40] -rwx------. 1 boincer umatlas     36292 Jul 27 16:32 runpilot2-wrapper.sh
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 16:32 queuedata.json
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:42:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:14 run_atlas
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:14 job.xml
[2025-07-28 00:42:40] -rw-r--r--. 2 boincer umatlas 233252238 Jul 27 23:14 EVNT.45759910._000005.pool.root.1
[2025-07-28 00:42:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:14 start_atlas.sh
[2025-07-28 00:42:40] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:14 shared
[2025-07-28 00:42:40] -rw-r--r--. 2 boincer umatlas    542875 Jul 27 23:14 input.tar.gz
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:14 boinc_lockfile
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas      2555 Jul 27 23:14 pandaJob.out
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas    980117 Jul 27 23:15 agis_schedconf.cvmfs.json
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:15 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:42:40] drwx------. 4 boincer umatlas      4096 Jul 27 23:15 pilot3
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas      6947 Jul 28 00:40 init_data.xml
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas       529 Jul 28 00:41 boinc_task_state.xml
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas 172413027 Jul 28 00:41 HITS.45759912._000127.pool.root.1
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas        95 Jul 28 00:41 pilot_heartbeat.json
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas      1026 Jul 28 00:41 memory_monitor_summary.json
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas    319995 Jul 28 00:42 log.45759912._000127.job.log.tgz.1
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas      7757 Jul 28 00:42 heartbeat.json
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas        27 Jul 28 00:42 wrapper_checkpoint.txt
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 00:42 boinc_mmap_file
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas       822 Jul 28 00:42 pilotlog.txt
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas    507221 Jul 28 00:42 log.45759912._000127.job.log.1
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas       357 Jul 28 00:42 output.list
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas       620 Jul 28 00:42 runtime_log
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas    849920 Jul 28 00:42 result.tar.gz
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas      8655 Jul 28 00:42 runtime_log.err
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas       651 Jul 28 00:42 BTwKDm5DN07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbNWLDmcUSQ3n.diag
[2025-07-28 00:42:40] -rw-r--r--. 1 boincer umatlas     21695 Jul 28 00:42 stderr.txt
[2025-07-28 00:42:40] HITS file was successfully produced:
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas 172413027 Jul 28 00:41 shared/HITS.pool.root.1
[2025-07-28 00:42:40]  *** Contents of shared directory: ***
[2025-07-28 00:42:40] total 397552
[2025-07-28 00:42:40] -rw-r--r--. 2 boincer umatlas 233252238 Jul 27 23:14 ATLAS.root_0
[2025-07-28 00:42:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:14 start_atlas.sh
[2025-07-28 00:42:40] -rw-r--r--. 2 boincer umatlas    542875 Jul 27 23:14 input.tar.gz
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas 172413027 Jul 28 00:41 HITS.pool.root.1
[2025-07-28 00:42:40] -rw-------. 1 boincer umatlas    849920 Jul 28 00:42 result.tar.gz
00:42:42 (3206777): run_atlas exited; CPU time 38757.365317
00:42:42 (3206777): called boinc_finish(0)

</stderr_txt>
]]>

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