Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:35:28 (355400): wrapper (7.7.26015): starting
23:35:28 (355400): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 23:35:28] Arguments: --nthreads 8
[2025-07-27 23:35:28] Threads: 8
[2025-07-27 23:35:28] Checking for CVMFS
[2025-07-27 23:35:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:35:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:35:28] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:35:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:35:28] 2.13.1.0 285388 9282 91896 148834 0 188 11388322 40960000 12923 16776704 0 128202486 99.999 359978 33232 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 23:35:28] CVMFS is ok
[2025-07-27 23:35:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:35:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:35:28] Further information can be found at the LHC@home message board.
[2025-07-27 23:35:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:35:28] Checking for apptainer binary...
[2025-07-27 23:35:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:35:28] Running /usr/bin/apptainer --version
[2025-07-27 23:35:28] apptainer version 1.4.1-1.el9
[2025-07-27 23:35:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:35:28] c-208-36.aglt2.org
[2025-07-27 23:35:28] apptainer works
[2025-07-27 23:35:28] Set ATHENA_PROC_NUMBER=8
[2025-07-27 23:35:28] Set ATHENA_CORE_NUMBER=8
[2025-07-27 23:35:28] Starting ATLAS job with PandaID=6745063209
[2025-07-27 23:35:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:27:39]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:27:39]  is_altstaged=None
[2025-07-28 00:27:39]  is_tar=False
[2025-07-28 00:27:39]  lfn=log.45743349._027879.job.log.tgz.1
[2025-07-28 00:27:39]  mtime=0
[2025-07-28 00:27:39]  protocol_id=None
[2025-07-28 00:27:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 00:27:39]  replicas=None
[2025-07-28 00:27:39]  scope=mc23_13p6TeV
[2025-07-28 00:27:39]  status=None
[2025-07-28 00:27:39]  status_code=0
[2025-07-28 00:27:39]  storage_token=
[2025-07-28 00:27:39]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6745063209/log.45743349._027879.job.log.tgz.1
[2025-07-28 00:27:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/b8/log.45743349._027879.job.log.tgz.1
[2025-07-28 00:27:39]  workdir=None
[2025-07-28 00:27:39] ]
[2025-07-28 00:27:39] 2025-07-28 04:27:02,623 | INFO     | transferring file log.45743349._027879.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6745063209/log.45743349._027879.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 00:27:39] 2025-07-28 04:27:02,623 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6745063209/log.45743349._027879.job.log.tgz.1 /tmp/boinchome/slots/5/log.45743349._027879.job
[2025-07-28 00:27:39] 2025-07-28 04:27:02,637 | INFO     | adding to output.list: log.45743349._027879.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/b8/log.45743349._027879.job.log.tg
[2025-07-28 00:27:39] 2025-07-28 04:27:02,638 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:27:39] 2025-07-28 04:27:02,638 | INFO     | summary of transferred files:
[2025-07-28 00:27:39] 2025-07-28 04:27:02,638 | INFO     |  -- lfn=log.45743349._027879.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:27:39] 2025-07-28 04:27:02,638 | INFO     | stage-out finished correctly
[2025-07-28 00:27:39] 2025-07-28 04:27:04,605 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:27:39] 2025-07-28 04:27:04,649 | INFO     | job 6745063209 has state=finished
[2025-07-28 00:27:39] 2025-07-28 04:27:04,649 | INFO     | preparing for final server update for job 6745063209 in state='finished'
[2025-07-28 00:27:39] 2025-07-28 04:27:04,649 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:27:39] 2025-07-28 04:27:04,649 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:27:39] 2025-07-28 04:27:04,650 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:27:39] 2025-07-28 04:27:04,650 | INFO     | job 6745063209 has finished - writing final server update
[2025-07-28 00:27:39] 2025-07-28 04:27:04,650 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:27:39] 2025-07-28 04:27:04,650 | INFO     | executing command: lscpu
[2025-07-28 00:27:39] 2025-07-28 04:27:04,690 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:27:39] 2025-07-28 04:27:07,393 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 00:27:39] 2025-07-28 04:27:07,397 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3563.2517499999954
[2025-07-28 00:27:39] 2025-07-28 04:27:07,405 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6745063209/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:27:39] 2025-07-28 04:27:07,405 | INFO     | extracted standard info from prmon json
[2025-07-28 00:27:39] 2025-07-28 04:27:07,405 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:27:39] 2025-07-28 04:27:07,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:27:39] 2025-07-28 04:27:07,405 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:27:39] 2025-07-28 04:27:07,405 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:27:39] 2025-07-28 04:27:07,406 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:27:39] 2025-07-28 04:27:07,406 | INFO     | sum of square deviations: 26400495.0
[2025-07-28 00:27:39] 2025-07-28 04:27:07,406 | INFO     | sum of deviations: -192703208.99999997
[2025-07-28 00:27:39] 2025-07-28 04:27:07,406 | INFO     | mean x: 1753675378.5
[2025-07-28 00:27:39] 2025-07-28 04:27:07,406 | INFO     | mean y: 2537088.5454545454
[2025-07-28 00:27:39] 2025-07-28 04:27:07,406 | INFO     | -- intersect: 12803011965.294527
[2025-07-28 00:27:39] 2025-07-28 04:27:07,406 | INFO     | intersect: 12803011965.294527
[2025-07-28 00:27:39] 2025-07-28 04:27:07,406 | INFO     | chi2: 0.0010275880798503306
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | -- intersect: 12803011965.294527
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | current memory leak: -7.30 B/s (using 44 data points, chi2=0.00)
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | could have reported an average CPU frequency of 3725 MHz (5 samples)
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | ..............................
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | . Timing measurements:
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | . get job = 0 s
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | . initial setup = 2 s
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | . payload setup = 5 s
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | . stage-in = 0 s
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | . payload execution = 3060 s
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | . stage-out = 0 s
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | . log creation = 0 s
[2025-07-28 00:27:39] 2025-07-28 04:27:07,407 | INFO     | ..............................
[2025-07-28 00:27:39] 2025-07-28 04:27:07,440 | INFO     | 
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | job summary report
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | --------------------------------------------------
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | PanDA job id: 6745063209
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | task id: 45743349
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | errors: (none)
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | pilot state: finished 
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | transexitcode: 0
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | exeerrorcode: 0
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | exeerrordiag: 
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | exitcode: 0
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | exitmsg: OK
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | cpuconsumptiontime: 22849 s
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | nevents: 400
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | neventsw: 0
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | pid: 367545
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | pgrp: 367545
[2025-07-28 00:27:39] 2025-07-28 04:27:07,441 | INFO     | corecount: 8
[2025-07-28 00:27:39] 2025-07-28 04:27:07,442 | INFO     | event service: False
[2025-07-28 00:27:39] 2025-07-28 04:27:07,442 | INFO     | sizes: {0: 2397474, 4: 2397736, 11: 2397764, 3069: 2423181, 3070: 2432179, 3072: 2432235, 3075: 2432589}
[2025-07-28 00:27:39] 2025-07-28 04:27:07,442 | INFO     | --------------------------------------------------
[2025-07-28 00:27:39] 2025-07-28 04:27:07,442 | INFO     | 
[2025-07-28 00:27:39] 2025-07-28 04:27:07,442 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-28 00:27:39] 2025-07-28 04:27:07,459 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,459 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,459 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,459 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,459 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,459 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,459 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,459 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | job 6745063209 has completed (purged errors)
[2025-07-28 00:27:39] 2025-07-28 04:27:07,460 | INFO     | overall cleanup function is called
[2025-07-28 00:27:39] 2025-07-28 04:27:08,067 | WARNING  | process 367545 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 00:27:39] 2025-07-28 04:27:08,210 | INFO     | using path: /tmp/boinchome/slots/5/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:27:39] 2025-07-28 04:27:08,395 | INFO     | number of running child processes to parent process 367545: 1
[2025-07-28 00:27:39] 2025-07-28 04:27:08,395 | INFO     | maximum number of monitored processes: 6
[2025-07-28 00:27:39] 2025-07-28 04:27:08,395 | INFO     | aborting job monitoring since job object (job id=6745063209) has expired
[2025-07-28 00:27:39] 2025-07-28 04:27:08,467 | INFO     | --- collectZombieJob: --- 10, [367545]
[2025-07-28 00:27:39] 2025-07-28 04:27:08,467 | INFO     | zombie collector waiting for pid 367545
[2025-07-28 00:27:39] 2025-07-28 04:27:08,467 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:27:39] 2025-07-28 04:27:08,467 | INFO     | collected zombie processes
[2025-07-28 00:27:39] 2025-07-28 04:27:08,467 | INFO     | will attempt to kill all subprocesses of pid=367545
[2025-07-28 00:27:39] 2025-07-28 04:27:08,714 | INFO     | process IDs to be killed: [367545] (in reverse order)
[2025-07-28 00:27:39] 2025-07-28 04:27:08,790 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:27:39] 2025-07-28 04:27:08,790 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:27:39] 2025-07-28 04:27:08,804 | INFO     | did not find any defunct processes belonging to 367545
[2025-07-28 00:27:39] 2025-07-28 04:27:08,815 | INFO     | did not find any defunct processes belonging to 367545
[2025-07-28 00:27:39] 2025-07-28 04:27:08,815 | INFO     | ready for new job
[2025-07-28 00:27:39] 2025-07-28 04:27:08,815 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:27:39] 2025-07-28 04:27:08,816 | INFO     | ***************************************
[2025-07-28 00:27:39] 2025-07-28 04:27:08,816 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:27:39] 2025-07-28 04:27:08,816 | INFO     | ***************************************
[2025-07-28 00:27:39] 2025-07-28 04:27:08,816 | INFO     | 
[2025-07-28 00:27:39] 2025-07-28 04:27:08,819 | INFO     | architecture information:
[2025-07-28 00:27:39] 2025-07-28 04:27:08,819 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:27:39] 2025-07-28 04:27:08,830 | INFO     | cat /etc/os-release:
[2025-07-28 00:27:39] NAME="CentOS Linux"
[2025-07-28 00:27:39] VERSION="7 (Core)"
[2025-07-28 00:27:39] ID="centos"
[2025-07-28 00:27:39] ID_LIKE="rhel fedora"
[2025-07-28 00:27:39] VERSION_ID="7"
[2025-07-28 00:27:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:27:39] ANSI_COLOR="0;31"
[2025-07-28 00:27:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:27:39] HOME_URL="https://www.centos.org/"
[2025-07-28 00:27:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:27:39] 
[2025-07-28 00:27:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:27:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:27:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:27:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:27:39] 
[2025-07-28 00:27:39] 2025-07-28 04:27:08,830 | INFO     | ***************************************
[2025-07-28 00:27:39] 2025-07-28 04:27:09,333 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-28 00:27:39] 2025-07-28 04:27:09,346 | INFO     | sufficient remaining disk space (168266039296 B)
[2025-07-28 00:27:39] 2025-07-28 04:27:09,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:27:39] 2025-07-28 04:27:09,347 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:27:39] 2025-07-28 04:27:09,347 | INFO     | update_server=False
[2025-07-28 00:27:39] 2025-07-28 04:27:09,347 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:27:39] 2025-07-28 04:27:09,347 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:27:39] 2025-07-28 04:27:09,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:27:39] 2025-07-28 04:27:09,347 | INFO     | will abort loop
[2025-07-28 00:27:39] 2025-07-28 04:27:09,921 | INFO     | all data control threads have been joined
[2025-07-28 00:27:39] 2025-07-28 04:27:10,352 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:10,353 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:10,353 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:10,564 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:10,616 | INFO     | all payload control threads have been joined
[2025-07-28 00:27:39] 2025-07-28 04:27:10,624 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:10,654 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:27:39] 2025-07-28 04:27:10,677 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:27:39] 2025-07-28 04:27:10,795 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:10,799 | INFO     | all job control threads have been joined
[2025-07-28 00:27:39] 2025-07-28 04:27:10,927 | INFO     | [data] control thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:11,277 | INFO     | [job] validate thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:11,366 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:11,466 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:11,516 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:11,621 | INFO     | [payload] control thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:11,804 | INFO     | [job] control thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:11,827 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:12,682 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:14,660 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:27:39] 2025-07-28 04:27:14,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140593402095424)>', '<ExcThread(monitor, started 140592893896448)>']
[2025-07-28 00:27:39] 2025-07-28 04:27:19,863 | INFO     | all workflow threads have been joined
[2025-07-28 00:27:39] 2025-07-28 04:27:19,863 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:27:39] 2025-07-28 04:27:19,863 | INFO     | traces error code: 0
[2025-07-28 00:27:39] 2025-07-28 04:27:19,863 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:27:39] 2025-07-28 04:27:39,326 | INFO     | PID=359180 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 00:27:39] 2025-07-28 04:27:39,327 | INFO     | .. there are 9 such processes running
[2025-07-28 00:27:39] 2025-07-28 04:27:39,327 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:27:39] 2025-07-28 04:27:39,327 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:27:39] 2025-07-28 04:27:39,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:27:39] 2025-07-28 04:27:39,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:27:39] 2025-07-28 04:27:39,327 | INFO     | [monitor] control thread has ended
[2025-07-28 00:27:39] 2025-07-28 04:27:39,394 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:27:39] 2025-07-28 04:27:39,396 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:27:39] 2025-07-28 04:27:39,398 [wrapper] pilotpid: 359180
[2025-07-28 00:27:39] 2025-07-28 04:27:39,400 [wrapper] Pilot exit status: 0
[2025-07-28 00:27:39] 2025-07-28 04:27:39,407 [wrapper] pandaids: 6745063209
[2025-07-28 00:27:39] 2025-07-28 04:27:39,467 [wrapper] cleanup supervisor_pilot  553955 359181
[2025-07-28 00:27:39] 2025-07-28 04:27:39,469 [wrapper] Test setup, not cleaning
[2025-07-28 00:27:39] 2025-07-28 04:27:39,471 [wrapper] apfmon messages muted
[2025-07-28 00:27:39] 2025-07-28 04:27:39,473 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:27:39] 2025-07-28 04:27:39,474 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:27:39]  *** Error codes and diagnostics ***
[2025-07-28 00:27:39]     "exeErrorCode": 0,
[2025-07-28 00:27:39]     "exeErrorDiag": "",
[2025-07-28 00:27:39]     "pilotErrorCode": 0,
[2025-07-28 00:27:39]     "pilotErrorDiag": "",
[2025-07-28 00:27:39]  *** Listing of results directory ***
[2025-07-28 00:27:39] total 357476
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 17:52 pilot3.tar.gz
[2025-07-28 00:27:39] -rwx------. 1 boincer umatlas     36292 Jul 25 18:05 runpilot2-wrapper.sh
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 18:05 queuedata.json
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:27:39] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:35 run_atlas
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:35 job.xml
[2025-07-28 00:27:39] -rw-r--r--. 2 boincer umatlas 145437706 Jul 27 23:35 EVNT.45743347._001551.pool.root.1
[2025-07-28 00:27:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:35 start_atlas.sh
[2025-07-28 00:27:39] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:35 shared
[2025-07-28 00:27:39] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 23:35 input.tar.gz
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:35 boinc_lockfile
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 23:35 pandaJob.out
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas    980117 Jul 27 23:35 agis_schedconf.cvmfs.json
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:35 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:27:39] drwx------. 4 boincer umatlas      4096 Jul 27 23:35 pilot3
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas      7174 Jul 28 00:19 init_data.xml
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas       529 Jul 28 00:26 boinc_task_state.xml
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas 215531061 Jul 28 00:26 HITS.45743349._027879.pool.root.1
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas        95 Jul 28 00:26 pilot_heartbeat.json
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas      1028 Jul 28 00:26 memory_monitor_summary.json
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas    283998 Jul 28 00:27 log.45743349._027879.job.log.tgz.1
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas      7765 Jul 28 00:27 heartbeat.json
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 00:27 boinc_mmap_file
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas        27 Jul 28 00:27 wrapper_checkpoint.txt
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas       821 Jul 28 00:27 pilotlog.txt
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas    322057 Jul 28 00:27 log.45743349._027879.job.log.1
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas       357 Jul 28 00:27 output.list
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas       620 Jul 28 00:27 runtime_log
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas    624640 Jul 28 00:27 result.tar.gz
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas      8660 Jul 28 00:27 runtime_log.err
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas       651 Jul 28 00:27 CEIODmxifz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm4gzKDmE4YaWm.diag
[2025-07-28 00:27:39] -rw-r--r--. 1 boincer umatlas     21489 Jul 28 00:27 stderr.txt
[2025-07-28 00:27:39] HITS file was successfully produced:
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas 215531061 Jul 28 00:26 shared/HITS.pool.root.1
[2025-07-28 00:27:39]  *** Contents of shared directory: ***
[2025-07-28 00:27:39] total 353676
[2025-07-28 00:27:39] -rw-r--r--. 2 boincer umatlas 145437706 Jul 27 23:35 ATLAS.root_0
[2025-07-28 00:27:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:35 start_atlas.sh
[2025-07-28 00:27:39] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 23:35 input.tar.gz
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas 215531061 Jul 28 00:26 HITS.pool.root.1
[2025-07-28 00:27:39] -rw-------. 1 boincer umatlas    624640 Jul 28 00:27 result.tar.gz
00:27:41 (355400): run_atlas exited; CPU time 22924.012237
00:27:41 (355400): called boinc_finish(0)

</stderr_txt>
]]>

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