Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:23:39 (2439011): wrapper (7.7.26015): starting
15:23:39 (2439011): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 15:23:39] Arguments: --nthreads 6
[2025-07-28 15:23:39] Threads: 6
[2025-07-28 15:23:39] Checking for CVMFS
[2025-07-28 15:23:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 15:23:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 15:23:39] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 15:23:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 15:23:40] 2.11.5.0 2723278 4850 75284 148839 0 188 52267890 52428801 1787 130560 0 10845329 99.997 169703 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 15:23:40] CVMFS is ok
[2025-07-28 15:23:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 15:23:40] Checking for apptainer binary...
[2025-07-28 15:23:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 15:23:40] Running /usr/bin/apptainer --version
[2025-07-28 15:23:40] apptainer version 1.3.5-1.el9
[2025-07-28 15:23:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 15:23:40] testio008
[2025-07-28 15:23:40] apptainer works
[2025-07-28 15:23:40] Set ATHENA_PROC_NUMBER=6
[2025-07-28 15:23:40] Set ATHENA_CORE_NUMBER=6
[2025-07-28 15:23:40] Starting ATLAS job with PandaID=6747626427
[2025-07-28 15:23:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 16:53:36]  *** The last 200 lines of the pilot log: ***
[2025-07-28 16:53:36] 2025-07-28 07:52:26,480 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:28,982 | INFO     | monitor loop #419: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:28,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:31,486 | INFO     | monitor loop #420: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:31,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:31,877 | INFO     | PID=2442734 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 16:53:36] 2025-07-28 07:52:31,878 | INFO     | .. there are 2 such processes running
[2025-07-28 16:53:36] 2025-07-28 07:52:32,878 | INFO     | 5329s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-28 16:53:36] 2025-07-28 07:52:33,990 | INFO     | monitor loop #421: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:33,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:36,493 | INFO     | monitor loop #422: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:36,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:38,998 | INFO     | monitor loop #423: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:38,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:41,502 | INFO     | monitor loop #424: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:41,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:44,005 | INFO     | monitor loop #425: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:44,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:46,509 | INFO     | monitor loop #426: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:46,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:49,013 | INFO     | monitor loop #427: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:49,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:51,517 | INFO     | monitor loop #428: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:51,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:53,979 | INFO     | PID=2442734 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 16:53:36] 2025-07-28 07:52:53,979 | INFO     | .. there are 2 such processes running
[2025-07-28 16:53:36] 2025-07-28 07:52:54,020 | INFO     | monitor loop #429: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:54,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:56,524 | INFO     | monitor loop #430: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:56,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:52:59,028 | INFO     | monitor loop #431: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:52:59,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:53:01,532 | INFO     | monitor loop #432: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:53:01,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:53:04,035 | INFO     | monitor loop #433: job 0:6747626427 is in state 'finished'
[2025-07-28 16:53:36] 2025-07-28 07:53:04,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:53:36] 2025-07-28 07:53:04,250 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 16:53:36] 2025-07-28 07:53:04,252 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 3725.5281000000004
[2025-07-28 16:53:36] 2025-07-28 07:53:04,254 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6747626427/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 16:53:36] 2025-07-28 07:53:04,254 | INFO     | extracted standard info from prmon json
[2025-07-28 16:53:36] 2025-07-28 07:53:04,254 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 16:53:36] 2025-07-28 07:53:04,254 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 16:53:36] 2025-07-28 07:53:04,255 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 16:53:36] 2025-07-28 07:53:04,255 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | fitting pss+swap vs Time
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | sum of square deviations: 158737860.0
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | sum of deviations: 10800195789.999998
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | mean x: 1753686558.5
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | mean y: 2440242.425
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | -- intersect: -119314767297.67467
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | intersect: -119314767297.67467
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | chi2: 1.5845472092019321
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | -- intersect: -119314767297.67467
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | current memory leak: 68.04 B/s (using 80 data points, chi2=1.58)
[2025-07-28 16:53:36] 2025-07-28 07:53:04,256 | INFO     | could have reported an average CPU frequency of 3994 MHz (6 samples)
[2025-07-28 16:53:36] 2025-07-28 07:53:04,257 | INFO     | ..............................
[2025-07-28 16:53:36] 2025-07-28 07:53:04,257 | INFO     | . Timing measurements:
[2025-07-28 16:53:36] 2025-07-28 07:53:04,257 | INFO     | . get job = 0 s
[2025-07-28 16:53:36] 2025-07-28 07:53:04,257 | INFO     | . initial setup = 5 s
[2025-07-28 16:53:36] 2025-07-28 07:53:04,257 | INFO     | . payload setup = 1 s
[2025-07-28 16:53:36] 2025-07-28 07:53:04,257 | INFO     | . stage-in = 0 s
[2025-07-28 16:53:36] 2025-07-28 07:53:04,257 | INFO     | . payload execution = 5257 s
[2025-07-28 16:53:36] 2025-07-28 07:53:04,257 | INFO     | . stage-out = 1 s
[2025-07-28 16:53:36] 2025-07-28 07:53:04,257 | INFO     | . log creation = 0 s
[2025-07-28 16:53:36] 2025-07-28 07:53:04,257 | INFO     | ..............................
[2025-07-28 16:53:36] 2025-07-28 07:53:04,299 | INFO     | 
[2025-07-28 16:53:36] 2025-07-28 07:53:04,299 | INFO     | job summary report
[2025-07-28 16:53:36] 2025-07-28 07:53:04,299 | INFO     | --------------------------------------------------
[2025-07-28 16:53:36] 2025-07-28 07:53:04,299 | INFO     | PanDA job id: 6747626427
[2025-07-28 16:53:36] 2025-07-28 07:53:04,299 | INFO     | task id: 45743349
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | errors: (none)
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | pilot state: finished 
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | transexitcode: 0
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | exeerrorcode: 0
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | exeerrordiag: 
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | exitcode: 0
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | exitmsg: OK
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | cpuconsumptiontime: 26356 s
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | nevents: 400
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | neventsw: 0
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | pid: 2449302
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | pgrp: 2449302
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | corecount: 6
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | event service: False
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | sizes: {0: 2397475, 2: 2397737, 11: 2397765, 5263: 2424330, 5265: 2433328, 5267: 2433384, 5344: 2433706}
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | --------------------------------------------------
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | 
[2025-07-28 16:53:36] 2025-07-28 07:53:04,300 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,325 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 16:53:36] 2025-07-28 07:53:04,326 | INFO     | job 6747626427 has completed (purged errors)
[2025-07-28 16:53:36] 2025-07-28 07:53:04,326 | INFO     | overall cleanup function is called
[2025-07-28 16:53:36] 2025-07-28 07:53:05,332 | INFO     | --- collectZombieJob: --- 10, [2449302]
[2025-07-28 16:53:36] 2025-07-28 07:53:05,333 | INFO     | zombie collector waiting for pid 2449302
[2025-07-28 16:53:36] 2025-07-28 07:53:05,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 16:53:36] 2025-07-28 07:53:05,333 | INFO     | collected zombie processes
[2025-07-28 16:53:36] 2025-07-28 07:53:05,333 | INFO     | will attempt to kill all subprocesses of pid=2449302
[2025-07-28 16:53:36] 2025-07-28 07:53:05,405 | INFO     | process IDs to be killed: [2449302] (in reverse order)
[2025-07-28 16:53:36] 2025-07-28 07:53:05,459 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 16:53:36] 2025-07-28 07:53:05,460 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 16:53:36] 2025-07-28 07:53:05,465 | INFO     | did not find any defunct processes belonging to 2449302
[2025-07-28 16:53:36] 2025-07-28 07:53:05,467 | INFO     | did not find any defunct processes belonging to 2449302
[2025-07-28 16:53:36] 2025-07-28 07:53:05,468 | INFO     | ready for new job
[2025-07-28 16:53:36] 2025-07-28 07:53:05,468 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 16:53:36] 2025-07-28 07:53:05,470 | INFO     | ***************************************
[2025-07-28 16:53:36] 2025-07-28 07:53:05,470 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 16:53:36] 2025-07-28 07:53:05,470 | INFO     | ***************************************
[2025-07-28 16:53:36] 2025-07-28 07:53:05,471 | INFO     | 
[2025-07-28 16:53:36] 2025-07-28 07:53:05,471 | INFO     | architecture information:
[2025-07-28 16:53:36] 2025-07-28 07:53:05,472 | INFO     | executing command: cat /etc/os-release
[2025-07-28 16:53:36] 2025-07-28 07:53:05,493 | INFO     | cat /etc/os-release:
[2025-07-28 16:53:36] NAME="CentOS Linux"
[2025-07-28 16:53:36] VERSION="7 (Core)"
[2025-07-28 16:53:36] ID="centos"
[2025-07-28 16:53:36] ID_LIKE="rhel fedora"
[2025-07-28 16:53:36] VERSION_ID="7"
[2025-07-28 16:53:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 16:53:36] ANSI_COLOR="0;31"
[2025-07-28 16:53:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 16:53:36] HOME_URL="https://www.centos.org/"
[2025-07-28 16:53:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 16:53:36] 
[2025-07-28 16:53:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 16:53:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 16:53:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 16:53:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 16:53:36] 
[2025-07-28 16:53:36] 2025-07-28 07:53:05,494 | INFO     | ***************************************
[2025-07-28 16:53:36] 2025-07-28 07:53:05,997 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-07-28 16:53:36] 2025-07-28 07:53:06,020 | INFO     | sufficient remaining disk space (272761880576 B)
[2025-07-28 16:53:36] 2025-07-28 07:53:06,021 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 16:53:36] 2025-07-28 07:53:06,021 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 16:53:36] 2025-07-28 07:53:06,021 | INFO     | update_server=False
[2025-07-28 16:53:36] 2025-07-28 07:53:06,021 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 16:53:36] 2025-07-28 07:53:06,021 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 16:53:36] 2025-07-28 07:53:06,022 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 16:53:36] 2025-07-28 07:53:06,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 16:53:36] 2025-07-28 07:53:06,022 | INFO     | aborting loop
[2025-07-28 16:53:36] 2025-07-28 07:53:06,199 | INFO     | all payload control threads have been joined
[2025-07-28 16:53:36] 2025-07-28 07:53:06,229 | INFO     | all job control threads have been joined
[2025-07-28 16:53:36] 2025-07-28 07:53:06,934 | INFO     | all data control threads have been joined
[2025-07-28 16:53:36] 2025-07-28 07:53:07,026 | INFO     | [job] retrieve thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:07,027 | INFO     | [job] job monitor thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:07,027 | INFO     | [job] queue monitor thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:07,205 | INFO     | [payload] control thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:07,235 | INFO     | [job] control thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:07,643 | INFO     | [payload] validate_post thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:07,834 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:07,894 | INFO     | [payload] failed_post thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:07,939 | INFO     | [data] control thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:07,989 | INFO     | [job] validate thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:08,028 | INFO     | [data] copytool_out thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:08,098 | INFO     | [data] copytool_in thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:08,311 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:08,331 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:09,388 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 16:53:36] 2025-07-28 07:53:13,395 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:16,406 | INFO     | job.realtimelogging is not enabled
[2025-07-28 16:53:36] 2025-07-28 07:53:17,411 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 16:53:36] 2025-07-28 07:53:19,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139914939234112)>', '<ExcThread(monitor, started 139914431674112)>']
[2025-07-28 16:53:36] 2025-07-28 07:53:24,109 | INFO     | all workflow threads have been joined
[2025-07-28 16:53:36] 2025-07-28 07:53:24,110 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 16:53:36] 2025-07-28 07:53:24,110 | INFO     | traces error code: 0
[2025-07-28 16:53:36] 2025-07-28 07:53:24,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 16:53:36] 2025-07-28 07:53:36,176 | INFO     | PID=2442734 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 16:53:36] 2025-07-28 07:53:36,181 | INFO     | .. there are 2 such processes running
[2025-07-28 16:53:36] 2025-07-28 07:53:36,182 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 16:53:36] 2025-07-28 07:53:36,182 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 16:53:36] 2025-07-28 07:53:36,182 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 16:53:36] 2025-07-28 07:53:36,182 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 16:53:36] 2025-07-28 07:53:36,182 | INFO     | [monitor] control thread has ended
[2025-07-28 16:53:36] 2025-07-28 07:53:36,415 [wrapper] ==== pilot stdout END ====
[2025-07-28 16:53:36] 2025-07-28 07:53:36,416 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 16:53:36] 2025-07-28 07:53:36,418 [wrapper] pilotpid: 2442734
[2025-07-28 16:53:36] 2025-07-28 07:53:36,420 [wrapper] Pilot exit status: 0
[2025-07-28 16:53:36] 2025-07-28 07:53:36,426 [wrapper] pandaids: 6747626427
[2025-07-28 16:53:36] 2025-07-28 07:53:36,451 [wrapper] cleanup supervisor_pilot 2472263 2442735
[2025-07-28 16:53:36] 2025-07-28 07:53:36,454 [wrapper] Test setup, not cleaning
[2025-07-28 16:53:36] 2025-07-28 07:53:36,456 [wrapper] apfmon messages muted
[2025-07-28 16:53:36] 2025-07-28 07:53:36,457 [wrapper] ==== wrapper stdout END ====
[2025-07-28 16:53:36] 2025-07-28 07:53:36,459 [wrapper] ==== wrapper stderr END ====
[2025-07-28 16:53:36]  *** Error codes and diagnostics ***
[2025-07-28 16:53:36]     "exeErrorCode": 0,
[2025-07-28 16:53:36]     "exeErrorDiag": "",
[2025-07-28 16:53:36]     "pilotErrorCode": 0,
[2025-07-28 16:53:36]     "pilotErrorDiag": "",
[2025-07-28 16:53:36]  *** Listing of results directory ***
[2025-07-28 16:53:36] total 345256
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc    530466 Jul 28 04:12 pilot3.tar.gz
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc      5112 Jul 28 04:20 queuedata.json
[2025-07-28 16:53:36] -rwx------. 1 boinc boinc     36292 Jul 28 04:22 runpilot2-wrapper.sh
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc       100 Jul 28 15:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 16:53:36] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 15:23 run_atlas
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc       105 Jul 28 15:23 job.xml
[2025-07-28 16:53:36] -rw-r--r--. 2 boinc boinc 146894191 Jul 28 15:23 EVNT.45743347._002955.pool.root.1
[2025-07-28 16:53:36] -rw-r--r--. 2 boinc boinc     15095 Jul 28 15:23 start_atlas.sh
[2025-07-28 16:53:36] drwxrwx--x. 2 boinc boinc        68 Jul 28 15:23 shared
[2025-07-28 16:53:36] -rw-r--r--. 2 boinc boinc    542900 Jul 28 15:23 input.tar.gz
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc      9508 Jul 28 15:23 init_data.xml
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc         0 Jul 28 15:23 boinc_lockfile
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc      2563 Jul 28 15:23 pandaJob.out
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc    978460 Jul 28 15:23 agis_schedconf.cvmfs.json
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc   1593052 Jul 28 15:23 agis_ddmendpoints.agis.ALL.json
[2025-07-28 16:53:36] drwx------. 4 boinc boinc      4096 Jul 28 15:23 pilot3
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc 201164153 Jul 28 16:51 HITS.45743349._054529.pool.root.1
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc       529 Jul 28 16:51 boinc_task_state.xml
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc      1026 Jul 28 16:51 memory_monitor_summary.json
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc    274547 Jul 28 16:51 log.45743349._054529.job.log.tgz.1
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc      7759 Jul 28 16:53 heartbeat.json
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc        27 Jul 28 16:53 wrapper_checkpoint.txt
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc      8192 Jul 28 16:53 boinc_mmap_file
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc        95 Jul 28 16:53 pilot_heartbeat.json
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc       822 Jul 28 16:53 pilotlog.txt
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc    534008 Jul 28 16:53 log.45743349._054529.job.log.1
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc       357 Jul 28 16:53 output.list
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc       620 Jul 28 16:53 runtime_log
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc    829440 Jul 28 16:53 result.tar.gz
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc      8618 Jul 28 16:53 runtime_log.err
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc       641 Jul 28 16:53 D4sNDm27L07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvDWLDm5kHf5m.diag
[2025-07-28 16:53:36] -rw-r--r--. 1 boinc boinc     22168 Jul 28 16:53 stderr.txt
[2025-07-28 16:53:36] HITS file was successfully produced:
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc 201164153 Jul 28 16:51 shared/HITS.pool.root.1
[2025-07-28 16:53:36]  *** Contents of shared directory: ***
[2025-07-28 16:53:36] total 341264
[2025-07-28 16:53:36] -rw-r--r--. 2 boinc boinc 146894191 Jul 28 15:23 ATLAS.root_0
[2025-07-28 16:53:36] -rw-r--r--. 2 boinc boinc     15095 Jul 28 15:23 start_atlas.sh
[2025-07-28 16:53:36] -rw-r--r--. 2 boinc boinc    542900 Jul 28 15:23 input.tar.gz
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc 201164153 Jul 28 16:51 HITS.pool.root.1
[2025-07-28 16:53:36] -rw-------. 1 boinc boinc    829440 Jul 28 16:53 result.tar.gz
16:53:37 (2439011): run_atlas exited; CPU time 26394.052514
16:53:37 (2439011): called boinc_finish(0)

</stderr_txt>
]]>

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