Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:45:00 (342000): wrapper (7.7.26015): starting
10:45:00 (342000): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 10:45:00] Arguments: --nthreads 12
[2025-07-28 10:45:00] Threads: 12
[2025-07-28 10:45:00] Checking for CVMFS
[2025-07-28 10:45:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 10:45:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 10:45:00] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 10:45:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 10:45:01] 2.13.1.0 184675 394 58276 148841 3 57 3671145 4097024 0 130560 0 358452 99.993 11963 8974 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-07-28 10:45:01] CVMFS is ok
[2025-07-28 10:45:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 10:45:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 10:45:01] Further information can be found at the LHC@home message board.
[2025-07-28 10:45:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 10:45:01] Checking for apptainer binary...
[2025-07-28 10:45:01] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-07-28 10:45:01] apptainer is not installed, using version from CVMFS
[2025-07-28 10:45:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 10:45:01] pckelar6.cern.ch
[2025-07-28 10:45:01] apptainer works
[2025-07-28 10:45:01] Set ATHENA_PROC_NUMBER=12
[2025-07-28 10:45:01] Set ATHENA_CORE_NUMBER=12
[2025-07-28 10:45:01] Starting ATLAS job with PandaID=6747627331
[2025-07-28 10:45:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 12:01:04]  *** The last 200 lines of the pilot log: ***
[2025-07-28 12:01:04]  lfn=log.45743349._054881.job.log.tgz.1
[2025-07-28 12:01:04]  mtime=0
[2025-07-28 12:01:04]  protocol_id=None
[2025-07-28 12:01:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 12:01:04]  replicas=None
[2025-07-28 12:01:04]  scope=mc23_13p6TeV
[2025-07-28 12:01:04]  status=None
[2025-07-28 12:01:04]  status_code=0
[2025-07-28 12:01:04]  storage_token=
[2025-07-28 12:01:04]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6747627331/log.45743349._054881.job.log.tgz.1
[2025-07-28 12:01:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/39/9e/log.45743349._054881.job.log.tgz.1
[2025-07-28 12:01:04]  workdir=None
[2025-07-28 12:01:04] ]
[2025-07-28 12:01:04] 2025-07-28 10:00:24,925 | INFO     | transferring file log.45743349._054881.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6747627331/log.45743349._054881.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 12:01:04] 2025-07-28 10:00:24,925 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6747627331/log.45743349._054881.job.log.tgz.1 /var/lib/boinc/slots/0/log.45743349._054881.job
[2025-07-28 12:01:04] 2025-07-28 10:00:24,937 | INFO     | adding to output.list: log.45743349._054881.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/39/9e/log.45743349._054881.job.log.tg
[2025-07-28 12:01:04] 2025-07-28 10:00:24,938 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 12:01:04] 2025-07-28 10:00:24,938 | INFO     | summary of transferred files:
[2025-07-28 12:01:04] 2025-07-28 10:00:24,938 | INFO     |  -- lfn=log.45743349._054881.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 12:01:04] 2025-07-28 10:00:24,938 | INFO     | stage-out finished correctly
[2025-07-28 12:01:04] 2025-07-28 10:00:26,600 | INFO     | monitor loop #339: job 0:6747627331 is in state 'finished'
[2025-07-28 12:01:04] 2025-07-28 10:00:26,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:01:04] 2025-07-28 10:00:26,925 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 12:01:04] 2025-07-28 10:00:28,812 | INFO     | job 6747627331 has state=finished
[2025-07-28 12:01:04] 2025-07-28 10:00:28,812 | INFO     | preparing for final server update for job 6747627331 in state='finished'
[2025-07-28 12:01:04] 2025-07-28 10:00:28,812 | INFO     | this job has now completed (state=finished)
[2025-07-28 12:01:04] 2025-07-28 10:00:28,812 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 12:01:04] 2025-07-28 10:00:28,813 | INFO     | log transfer has been attempted: DONE
[2025-07-28 12:01:04] 2025-07-28 10:00:28,813 | INFO     | job 6747627331 has finished - writing final server update
[2025-07-28 12:01:04] 2025-07-28 10:00:28,813 | INFO     | total number of processed events: 400 (read)
[2025-07-28 12:01:04] 2025-07-28 10:00:28,814 | INFO     | executing command: lscpu
[2025-07-28 12:01:04] 2025-07-28 10:00:28,833 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 12:01:04] 2025-07-28 10:00:29,103 | INFO     | monitor loop #340: job 0:6747627331 is in state 'finished'
[2025-07-28 12:01:04] 2025-07-28 10:00:29,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:01:04] 2025-07-28 10:00:30,526 | INFO     | PID=345717 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 12:01:04] 2025-07-28 10:00:31,606 | INFO     | monitor loop #341: job 0:6747627331 is in state 'finished'
[2025-07-28 12:01:04] 2025-07-28 10:00:31,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:01:04] 2025-07-28 10:00:32,988 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 12:01:04] 2025-07-28 10:00:32,990 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2218.35875
[2025-07-28 12:01:04] 2025-07-28 10:00:32,991 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6747627331/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 12:01:04] 2025-07-28 10:00:32,992 | INFO     | extracted standard info from prmon json
[2025-07-28 12:01:04] 2025-07-28 10:00:32,992 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 12:01:04] 2025-07-28 10:00:32,992 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 12:01:04] 2025-07-28 10:00:32,992 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 12:01:04] 2025-07-28 10:00:32,992 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 12:01:04] 2025-07-28 10:00:32,994 | INFO     | fitting pss+swap vs Time
[2025-07-28 12:01:04] 2025-07-28 10:00:32,994 | INFO     | sum of square deviations: 93240818.0
[2025-07-28 12:01:04] 2025-07-28 10:00:32,994 | INFO     | sum of deviations: -10825433747.0
[2025-07-28 12:01:04] 2025-07-28 10:00:32,994 | INFO     | mean x: 1753694648.0
[2025-07-28 12:01:04] 2025-07-28 10:00:32,994 | INFO     | mean y: 2888714.4925373136
[2025-07-28 12:01:04] 2025-07-28 10:00:32,995 | INFO     | -- intersect: 203610124596.87708
[2025-07-28 12:01:04] 2025-07-28 10:00:32,995 | INFO     | intersect: 203610124596.87708
[2025-07-28 12:01:04] 2025-07-28 10:00:32,995 | INFO     | chi2: 0.09331608293912882
[2025-07-28 12:01:04] 2025-07-28 10:00:32,995 | INFO     | -- intersect: 203610124596.87708
[2025-07-28 12:01:04] 2025-07-28 10:00:32,995 | INFO     | current memory leak: -116.10 B/s (using 67 data points, chi2=0.09)
[2025-07-28 12:01:04] 2025-07-28 10:00:32,995 | INFO     | could have reported an average CPU frequency of 2552 MHz (6 samples)
[2025-07-28 12:01:04] 2025-07-28 10:00:32,995 | INFO     | ..............................
[2025-07-28 12:01:04] 2025-07-28 10:00:32,995 | INFO     | . Timing measurements:
[2025-07-28 12:01:04] 2025-07-28 10:00:32,996 | INFO     | . get job = 0 s
[2025-07-28 12:01:04] 2025-07-28 10:00:32,996 | INFO     | . initial setup = 1 s
[2025-07-28 12:01:04] 2025-07-28 10:00:32,996 | INFO     | . payload setup = 5 s
[2025-07-28 12:01:04] 2025-07-28 10:00:32,996 | INFO     | . stage-in = 0 s
[2025-07-28 12:01:04] 2025-07-28 10:00:32,996 | INFO     | . payload execution = 4493 s
[2025-07-28 12:01:04] 2025-07-28 10:00:32,996 | INFO     | . stage-out = 0 s
[2025-07-28 12:01:04] 2025-07-28 10:00:32,996 | INFO     | . log creation = 0 s
[2025-07-28 12:01:04] 2025-07-28 10:00:32,996 | INFO     | ..............................
[2025-07-28 12:01:04] 2025-07-28 10:00:33,258 | INFO     | 
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | job summary report
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | --------------------------------------------------
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | PanDA job id: 6747627331
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | task id: 45743349
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | errors: (none)
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | pilot state: finished 
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | transexitcode: 0
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | exeerrorcode: 0
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | exeerrordiag: 
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | exitcode: 0
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | exitmsg: OK
[2025-07-28 12:01:04] 2025-07-28 10:00:33,259 | INFO     | cpuconsumptiontime: 48678 s
[2025-07-28 12:01:04] 2025-07-28 10:00:33,260 | INFO     | nevents: 400
[2025-07-28 12:01:04] 2025-07-28 10:00:33,260 | INFO     | neventsw: 0
[2025-07-28 12:01:04] 2025-07-28 10:00:33,260 | INFO     | pid: 352836
[2025-07-28 12:01:04] 2025-07-28 10:00:33,260 | INFO     | pgrp: 352836
[2025-07-28 12:01:04] 2025-07-28 10:00:33,260 | INFO     | corecount: 12
[2025-07-28 12:01:04] 2025-07-28 10:00:33,260 | INFO     | event service: False
[2025-07-28 12:01:04] 2025-07-28 10:00:33,260 | INFO     | sizes: {0: 2396647, 1: 2397503, 4: 2397765, 12: 2397793, 4503: 2424000, 4504: 2432998, 4506: 2433182, 4512: 2433376}
[2025-07-28 12:01:04] 2025-07-28 10:00:33,260 | INFO     | --------------------------------------------------
[2025-07-28 12:01:04] 2025-07-28 10:00:33,260 | INFO     | 
[2025-07-28 12:01:04] 2025-07-28 10:00:33,260 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-28 12:01:04] 2025-07-28 10:00:33,277 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,278 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,278 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,278 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,279 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,279 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,279 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,279 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,279 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 12:01:04] 2025-07-28 10:00:33,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,279 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 12:01:04] 2025-07-28 10:00:33,279 | INFO     | job 6747627331 has completed (purged errors)
[2025-07-28 12:01:04] 2025-07-28 10:00:33,280 | INFO     | overall cleanup function is called
[2025-07-28 12:01:04] 2025-07-28 10:00:34,286 | INFO     | --- collectZombieJob: --- 10, [352836]
[2025-07-28 12:01:04] 2025-07-28 10:00:34,287 | INFO     | zombie collector waiting for pid 352836
[2025-07-28 12:01:04] 2025-07-28 10:00:34,287 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 12:01:04] 2025-07-28 10:00:34,287 | INFO     | collected zombie processes
[2025-07-28 12:01:04] 2025-07-28 10:00:34,287 | INFO     | will attempt to kill all subprocesses of pid=352836
[2025-07-28 12:01:04] 2025-07-28 10:00:34,363 | INFO     | process IDs to be killed: [352836] (in reverse order)
[2025-07-28 12:01:04] 2025-07-28 10:00:34,397 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 12:01:04] 2025-07-28 10:00:34,397 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 12:01:04] 2025-07-28 10:00:34,400 | INFO     | did not find any defunct processes belonging to 352836
[2025-07-28 12:01:04] 2025-07-28 10:00:34,402 | INFO     | did not find any defunct processes belonging to 352836
[2025-07-28 12:01:04] 2025-07-28 10:00:34,402 | INFO     | ready for new job
[2025-07-28 12:01:04] 2025-07-28 10:00:34,402 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 12:01:04] 2025-07-28 10:00:34,403 | INFO     | ***************************************
[2025-07-28 12:01:04] 2025-07-28 10:00:34,403 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 12:01:04] 2025-07-28 10:00:34,403 | INFO     | ***************************************
[2025-07-28 12:01:04] 2025-07-28 10:00:34,403 | INFO     | 
[2025-07-28 12:01:04] 2025-07-28 10:00:34,404 | INFO     | architecture information:
[2025-07-28 12:01:04] 2025-07-28 10:00:34,404 | INFO     | executing command: cat /etc/os-release
[2025-07-28 12:01:04] 2025-07-28 10:00:34,413 | INFO     | cat /etc/os-release:
[2025-07-28 12:01:04] NAME="CentOS Linux"
[2025-07-28 12:01:04] VERSION="7 (Core)"
[2025-07-28 12:01:04] ID="centos"
[2025-07-28 12:01:04] ID_LIKE="rhel fedora"
[2025-07-28 12:01:04] VERSION_ID="7"
[2025-07-28 12:01:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 12:01:04] ANSI_COLOR="0;31"
[2025-07-28 12:01:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 12:01:04] HOME_URL="https://www.centos.org/"
[2025-07-28 12:01:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 12:01:04] 
[2025-07-28 12:01:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 12:01:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 12:01:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 12:01:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 12:01:04] 
[2025-07-28 12:01:04] 2025-07-28 10:00:34,413 | INFO     | ***************************************
[2025-07-28 12:01:04] 2025-07-28 10:00:34,916 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-28 12:01:04] 2025-07-28 10:00:34,928 | INFO     | sufficient remaining disk space (870797279232 B)
[2025-07-28 12:01:04] 2025-07-28 10:00:34,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 12:01:04] 2025-07-28 10:00:34,929 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 12:01:04] 2025-07-28 10:00:34,929 | INFO     | update_server=False
[2025-07-28 12:01:04] 2025-07-28 10:00:34,929 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 12:01:04] 2025-07-28 10:00:34,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:01:04] 2025-07-28 10:00:35,077 | INFO     | all job control threads have been joined
[2025-07-28 12:01:04] 2025-07-28 10:00:35,114 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:01:04] 2025-07-28 10:00:35,114 | INFO     | aborting loop
[2025-07-28 12:01:04] 2025-07-28 10:00:35,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 12:01:04] 2025-07-28 10:00:35,832 | INFO     | all data control threads have been joined
[2025-07-28 12:01:04] 2025-07-28 10:00:35,934 | INFO     | [job] retrieve thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:35,935 | INFO     | [job] queue monitor thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:35,968 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:36,082 | INFO     | [job] control thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:36,120 | INFO     | [job] job monitor thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:36,217 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:36,317 | INFO     | all payload control threads have been joined
[2025-07-28 12:01:04] 2025-07-28 10:00:36,604 | INFO     | [payload] validate_post thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:36,631 | INFO     | [payload] failed_post thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:36,838 | INFO     | [data] control thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:37,226 | INFO     | [job] validate thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:37,301 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:37,322 | INFO     | [payload] control thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:37,364 | INFO     | [data] copytool_in thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:37,500 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 12:01:04] 2025-07-28 10:00:37,538 | INFO     | [data] copytool_out thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:41,506 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:45,834 | INFO     | job.realtimelogging is not enabled
[2025-07-28 12:01:04] 2025-07-28 10:00:46,839 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 12:01:04] 2025-07-28 10:00:48,644 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140628571395904)>', '<ExcThread(monitor, started 140627731789568)>']
[2025-07-28 12:01:04] 2025-07-28 10:00:53,650 | INFO     | all workflow threads have been joined
[2025-07-28 12:01:04] 2025-07-28 10:00:53,650 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 12:01:04] 2025-07-28 10:00:53,650 | INFO     | traces error code: 0
[2025-07-28 12:01:04] 2025-07-28 10:00:53,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 12:01:04] 2025-07-28 10:01:04,714 | INFO     | PID=345717 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 12:01:04] 2025-07-28 10:01:04,715 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 12:01:04] 2025-07-28 10:01:04,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 12:01:04] 2025-07-28 10:01:04,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 12:01:04] 2025-07-28 10:01:04,715 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 12:01:04] 2025-07-28 10:01:04,715 | INFO     | [monitor] control thread has ended
[2025-07-28 12:01:04] 2025-07-28 10:01:04,787 [wrapper] ==== pilot stdout END ====
[2025-07-28 12:01:04] 2025-07-28 10:01:04,789 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 12:01:04] 2025-07-28 10:01:04,792 [wrapper] pilotpid: 345717
[2025-07-28 12:01:04] 2025-07-28 10:01:04,794 [wrapper] Pilot exit status: 0
[2025-07-28 12:01:04] 2025-07-28 10:01:04,803 [wrapper] pandaids: 6747627331
[2025-07-28 12:01:04] 2025-07-28 10:01:04,823 [wrapper] cleanup supervisor_pilot  371334 345718
[2025-07-28 12:01:04] 2025-07-28 10:01:04,825 [wrapper] Test setup, not cleaning
[2025-07-28 12:01:04] 2025-07-28 10:01:04,827 [wrapper] apfmon messages muted
[2025-07-28 12:01:04] 2025-07-28 10:01:04,829 [wrapper] ==== wrapper stdout END ====
[2025-07-28 12:01:04] 2025-07-28 10:01:04,831 [wrapper] ==== wrapper stderr END ====
[2025-07-28 12:01:04]  *** Error codes and diagnostics ***
[2025-07-28 12:01:04]     "exeErrorCode": 0,
[2025-07-28 12:01:04]     "exeErrorDiag": "",
[2025-07-28 12:01:04]     "pilotErrorCode": 0,
[2025-07-28 12:01:04]     "pilotErrorDiag": "",
[2025-07-28 12:01:04]  *** Listing of results directory ***
[2025-07-28 12:01:04] total 346064
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc    550332 Jun 18 17:33 pilot3.tar.gz
[2025-07-28 12:01:04] -rwx------. 1 boinc boinc     36292 Jul 27 21:51 runpilot2-wrapper.sh
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc      5112 Jul 27 21:51 queuedata.json
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc       100 Jul 28 10:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 12:01:04] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 10:45 run_atlas
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc       105 Jul 28 10:45 job.xml
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc      6291 Jul 28 10:45 init_data.xml
[2025-07-28 12:01:04] -rw-r--r--. 2 boinc boinc 145176261 Jul 28 10:45 EVNT.45743347._002978.pool.root.1
[2025-07-28 12:01:04] -rw-r--r--. 2 boinc boinc     15095 Jul 28 10:45 start_atlas.sh
[2025-07-28 12:01:04] drwxrwx--x. 2 boinc boinc        68 Jul 28 10:45 shared
[2025-07-28 12:01:04] -rw-r--r--. 2 boinc boinc    564556 Jul 28 10:45 input.tar.gz
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc         0 Jul 28 10:45 boinc_lockfile
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc      2563 Jul 28 10:45 pandaJob.out
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc    978452 Jul 28 10:45 agis_schedconf.cvmfs.json
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc   1593052 Jul 28 10:45 agis_ddmendpoints.agis.ALL.json
[2025-07-28 12:01:04] drwx------. 6 boinc boinc      4096 Jul 28 10:45 pilot3
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc 203694296 Jul 28 11:59 HITS.45743349._054881.pool.root.1
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc       529 Jul 28 12:00 boinc_task_state.xml
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc      1014 Jul 28 12:00 memory_monitor_summary.json
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc    357624 Jul 28 12:00 log.45743349._054881.job.log.tgz.1
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc      7788 Jul 28 12:00 heartbeat.json
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc      8192 Jul 28 12:00 boinc_mmap_file
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc        27 Jul 28 12:00 wrapper_checkpoint.txt
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc       746 Jul 28 12:01 pilotlog.txt
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc        95 Jul 28 12:01 pilot_heartbeat.json
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc    440351 Jul 28 12:01 log.45743349._054881.job.log.1
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc       357 Jul 28 12:01 output.list
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc       620 Jul 28 12:01 runtime_log
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc    819200 Jul 28 12:01 result.tar.gz
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc       656 Jul 28 12:01 zAhKDm5ZM07n9Rq4apOajLDm4fhM0noT9bVof3QYDmO22KDmS01Hqn.diag
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc      8684 Jul 28 12:01 runtime_log.err
[2025-07-28 12:01:04] -rw-r--r--. 1 boinc boinc     21862 Jul 28 12:01 stderr.txt
[2025-07-28 12:01:04] HITS file was successfully produced:
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc 203694296 Jul 28 11:59 shared/HITS.pool.root.1
[2025-07-28 12:01:04]  *** Contents of shared directory: ***
[2025-07-28 12:01:04] total 342068
[2025-07-28 12:01:04] -rw-r--r--. 2 boinc boinc 145176261 Jul 28 10:45 ATLAS.root_0
[2025-07-28 12:01:04] -rw-r--r--. 2 boinc boinc     15095 Jul 28 10:45 start_atlas.sh
[2025-07-28 12:01:04] -rw-r--r--. 2 boinc boinc    564556 Jul 28 10:45 input.tar.gz
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc 203694296 Jul 28 11:59 HITS.pool.root.1
[2025-07-28 12:01:04] -rw-------. 1 boinc boinc    819200 Jul 28 12:01 result.tar.gz
12:01:06 (342000): run_atlas exited; CPU time 48708.954720
12:01:06 (342000): called boinc_finish(0)

</stderr_txt>
]]>

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