Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:56:21 (3827668): wrapper (7.7.26015): starting
22:56:21 (3827668): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 22:56:21] Arguments: --nthreads 8
[2025-07-27 22:56:21] Threads: 8
[2025-07-27 22:56:21] Checking for CVMFS
[2025-07-27 22:56:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:56:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:56:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:56:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:56:21] 2.13.1.0 4026694 9042 90192 148832 0 188 21393010 40960001 11866 16776704 0 127806743 99.999 321255 59635 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:56:21] CVMFS is ok
[2025-07-27 22:56:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:56:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:56:21] Further information can be found at the LHC@home message board.
[2025-07-27 22:56:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:56:21] Checking for apptainer binary...
[2025-07-27 22:56:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:56:21] Running /usr/bin/apptainer --version
[2025-07-27 22:56:21] apptainer version 1.4.1-1.el9
[2025-07-27 22:56:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:56:21] c-208-38.aglt2.org
[2025-07-27 22:56:21] apptainer works
[2025-07-27 22:56:21] Set ATHENA_PROC_NUMBER=8
[2025-07-27 22:56:21] Set ATHENA_CORE_NUMBER=8
[2025-07-27 22:56:21] Starting ATLAS job with PandaID=6747413426
[2025-07-27 22:56:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:50:16]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:50:16]  lfn=log.45743349._050200.job.log.tgz.1
[2025-07-27 23:50:16]  mtime=0
[2025-07-27 23:50:16]  protocol_id=None
[2025-07-27 23:50:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:50:16]  replicas=None
[2025-07-27 23:50:16]  scope=mc23_13p6TeV
[2025-07-27 23:50:16]  status=None
[2025-07-27 23:50:16]  status_code=0
[2025-07-27 23:50:16]  storage_token=
[2025-07-27 23:50:16]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6747413426/log.45743349._050200.job.log.tgz.1
[2025-07-27 23:50:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/ad/log.45743349._050200.job.log.tgz.1
[2025-07-27 23:50:16]  workdir=None
[2025-07-27 23:50:16] ]
[2025-07-27 23:50:16] 2025-07-28 03:49:37,788 | INFO     | transferring file log.45743349._050200.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6747413426/log.45743349._050200.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 23:50:16] 2025-07-28 03:49:37,788 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6747413426/log.45743349._050200.job.log.tgz.1 /tmp/boinchome/slots/3/log.45743349._050200.job
[2025-07-27 23:50:16] 2025-07-28 03:49:37,804 | INFO     | adding to output.list: log.45743349._050200.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/ad/log.45743349._050200.job.log.tg
[2025-07-27 23:50:16] 2025-07-28 03:49:37,805 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:50:16] 2025-07-28 03:49:37,805 | INFO     | summary of transferred files:
[2025-07-27 23:50:16] 2025-07-28 03:49:37,805 | INFO     |  -- lfn=log.45743349._050200.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:50:16] 2025-07-28 03:49:37,805 | INFO     | stage-out finished correctly
[2025-07-27 23:50:16] 2025-07-28 03:49:39,116 | INFO     | monitor loop #237: job 0:6747413426 is in state 'finished'
[2025-07-27 23:50:16] 2025-07-28 03:49:39,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:50:16] 2025-07-28 03:49:40,641 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:50:16] 2025-07-28 03:49:40,962 | INFO     | job 6747413426 has state=finished
[2025-07-27 23:50:16] 2025-07-28 03:49:40,962 | INFO     | preparing for final server update for job 6747413426 in state='finished'
[2025-07-27 23:50:16] 2025-07-28 03:49:40,962 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:50:16] 2025-07-28 03:49:40,962 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:50:16] 2025-07-28 03:49:40,963 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:50:16] 2025-07-28 03:49:40,963 | INFO     | job 6747413426 has finished - writing final server update
[2025-07-27 23:50:16] 2025-07-28 03:49:40,963 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:50:16] 2025-07-28 03:49:40,964 | INFO     | executing command: lscpu
[2025-07-27 23:50:16] 2025-07-28 03:49:41,019 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:50:16] 2025-07-28 03:49:41,620 | INFO     | monitor loop #238: job 0:6747413426 is in state 'finished'
[2025-07-27 23:50:16] 2025-07-28 03:49:41,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:50:16] 2025-07-28 03:49:44,123 | INFO     | monitor loop #239: job 0:6747413426 is in state 'finished'
[2025-07-27 23:50:16] 2025-07-28 03:49:44,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:50:16] 2025-07-28 03:49:44,535 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 23:50:16] 2025-07-28 03:49:44,540 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3743.864984374999
[2025-07-27 23:50:16] 2025-07-28 03:49:44,553 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6747413426/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:50:16] 2025-07-28 03:49:44,554 | INFO     | extracted standard info from prmon json
[2025-07-27 23:50:16] 2025-07-28 03:49:44,554 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:50:16] 2025-07-28 03:49:44,554 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:50:16] 2025-07-28 03:49:44,554 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:50:16] 2025-07-28 03:49:44,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:50:16] 2025-07-28 03:49:44,555 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:50:16] 2025-07-28 03:49:44,555 | INFO     | sum of square deviations: 28242390.0
[2025-07-27 23:50:16] 2025-07-28 03:49:44,555 | INFO     | sum of deviations: 2020929.9999999758
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | mean x: 1753673061.0
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | mean y: 2515671.222222222
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | -- intersect: -122971247.52533022
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | intersect: -122971247.52533022
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | chi2: 0.0004599673359836687
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | -- intersect: -122971247.52533022
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | current memory leak: 0.07 B/s (using 45 data points, chi2=0.00)
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | could have reported an average CPU frequency of 3719 MHz (5 samples)
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | ..............................
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | . Timing measurements:
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | . get job = 0 s
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | . initial setup = 2 s
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | . payload setup = 5 s
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | . stage-in = 0 s
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | . payload execution = 3163 s
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | . stage-out = 0 s
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | . log creation = 0 s
[2025-07-27 23:50:16] 2025-07-28 03:49:44,556 | INFO     | ..............................
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | 
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | job summary report
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | --------------------------------------------------
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | PanDA job id: 6747413426
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | task id: 45743349
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | errors: (none)
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | pilot state: finished 
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | transexitcode: 0
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | exeerrorcode: 0
[2025-07-27 23:50:16] 2025-07-28 03:49:44,764 | INFO     | exeerrordiag: 
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | exitcode: 0
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | exitmsg: OK
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | cpuconsumptiontime: 23670 s
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | nevents: 400
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | neventsw: 0
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | pid: 3840103
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | pgrp: 3840103
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | corecount: 8
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | event service: False
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | sizes: {0: 2397424, 3: 2397686, 11: 2397714, 3172: 2423210, 3173: 2432208, 3176: 2432264, 3180: 2432618}
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | --------------------------------------------------
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | 
[2025-07-27 23:50:16] 2025-07-28 03:49:44,765 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-27 23:50:16] 2025-07-28 03:49:44,783 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,783 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,783 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,783 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,783 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,783 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,783 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | job 6747413426 has completed (purged errors)
[2025-07-27 23:50:16] 2025-07-28 03:49:44,784 | INFO     | overall cleanup function is called
[2025-07-27 23:50:16] 2025-07-28 03:49:45,792 | INFO     | --- collectZombieJob: --- 10, [3840103]
[2025-07-27 23:50:16] 2025-07-28 03:49:45,792 | INFO     | zombie collector waiting for pid 3840103
[2025-07-27 23:50:16] 2025-07-28 03:49:45,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:50:16] 2025-07-28 03:49:45,792 | INFO     | collected zombie processes
[2025-07-27 23:50:16] 2025-07-28 03:49:45,792 | INFO     | will attempt to kill all subprocesses of pid=3840103
[2025-07-27 23:50:16] 2025-07-28 03:49:46,127 | INFO     | process IDs to be killed: [3840103] (in reverse order)
[2025-07-27 23:50:16] 2025-07-28 03:49:46,242 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:50:16] 2025-07-28 03:49:46,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:50:16] 2025-07-28 03:49:46,257 | INFO     | did not find any defunct processes belonging to 3840103
[2025-07-27 23:50:16] 2025-07-28 03:49:46,270 | INFO     | did not find any defunct processes belonging to 3840103
[2025-07-27 23:50:16] 2025-07-28 03:49:46,270 | INFO     | ready for new job
[2025-07-27 23:50:16] 2025-07-28 03:49:46,270 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:50:16] 2025-07-28 03:49:46,271 | INFO     | ***************************************
[2025-07-27 23:50:16] 2025-07-28 03:49:46,271 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:50:16] 2025-07-28 03:49:46,271 | INFO     | ***************************************
[2025-07-27 23:50:16] 2025-07-28 03:49:46,271 | INFO     | 
[2025-07-27 23:50:16] 2025-07-28 03:49:46,275 | INFO     | architecture information:
[2025-07-27 23:50:16] 2025-07-28 03:49:46,276 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:50:16] 2025-07-28 03:49:46,291 | INFO     | cat /etc/os-release:
[2025-07-27 23:50:16] NAME="CentOS Linux"
[2025-07-27 23:50:16] VERSION="7 (Core)"
[2025-07-27 23:50:16] ID="centos"
[2025-07-27 23:50:16] ID_LIKE="rhel fedora"
[2025-07-27 23:50:16] VERSION_ID="7"
[2025-07-27 23:50:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:50:16] ANSI_COLOR="0;31"
[2025-07-27 23:50:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:50:16] HOME_URL="https://www.centos.org/"
[2025-07-27 23:50:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:50:16] 
[2025-07-27 23:50:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:50:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:50:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:50:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:50:16] 
[2025-07-27 23:50:16] 2025-07-28 03:49:46,291 | INFO     | ***************************************
[2025-07-27 23:50:16] 2025-07-28 03:49:46,794 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-27 23:50:16] 2025-07-28 03:49:46,811 | INFO     | sufficient remaining disk space (165789302784 B)
[2025-07-27 23:50:16] 2025-07-28 03:49:46,811 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:50:16] 2025-07-28 03:49:46,811 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:50:16] 2025-07-28 03:49:46,811 | INFO     | update_server=False
[2025-07-27 23:50:16] 2025-07-28 03:49:46,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:50:16] 2025-07-28 03:49:46,812 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:50:16] 2025-07-28 03:49:46,812 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:50:16] 2025-07-28 03:49:47,010 | INFO     | all data control threads have been joined
[2025-07-27 23:50:16] 2025-07-28 03:49:47,113 | INFO     | all job control threads have been joined
[2025-07-27 23:50:16] 2025-07-28 03:49:47,632 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:50:16] 2025-07-28 03:49:47,632 | INFO     | aborting loop
[2025-07-27 23:50:16] 2025-07-28 03:49:47,817 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:47,911 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:47,967 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:48,016 | INFO     | [data] control thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:48,119 | INFO     | [job] control thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:48,219 | INFO     | all payload control threads have been joined
[2025-07-27 23:50:16] 2025-07-28 03:49:48,531 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:48,637 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:48,813 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:48,845 | INFO     | [job] validate thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:48,974 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:49,029 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:49,082 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:49,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:49,224 | INFO     | [payload] control thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:49,624 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:50:16] 2025-07-28 03:49:50,630 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:50,818 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:50:16] 2025-07-28 03:49:50,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140047710775104)>', '<ExcThread(monitor, started 140046980073216)>']
[2025-07-27 23:50:16] 2025-07-28 03:49:55,875 | INFO     | all workflow threads have been joined
[2025-07-27 23:50:16] 2025-07-28 03:49:55,876 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:50:16] 2025-07-28 03:49:55,876 | INFO     | traces error code: 0
[2025-07-27 23:50:16] 2025-07-28 03:49:55,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:50:16] 2025-07-28 03:50:15,166 | INFO     | 3197s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 23:50:16] 2025-07-28 03:50:16,583 | INFO     | PID=3833530 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 23:50:16] 2025-07-28 03:50:16,583 | INFO     | .. there are 16 such processes running
[2025-07-27 23:50:16] 2025-07-28 03:50:16,583 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:50:16] 2025-07-28 03:50:16,583 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:50:16] 2025-07-28 03:50:16,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:50:16] 2025-07-28 03:50:16,584 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:50:16] 2025-07-28 03:50:16,584 | INFO     | [monitor] control thread has ended
[2025-07-27 23:50:16] 2025-07-28 03:50:16,663 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:50:16] 2025-07-28 03:50:16,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:50:16] 2025-07-28 03:50:16,669 [wrapper] pilotpid: 3833530
[2025-07-27 23:50:16] 2025-07-28 03:50:16,671 [wrapper] Pilot exit status: 0
[2025-07-27 23:50:16] 2025-07-28 03:50:16,679 [wrapper] pandaids: 6747413426
[2025-07-27 23:50:16] 2025-07-28 03:50:16,761 [wrapper] cleanup supervisor_pilot 4093874 3833531
[2025-07-27 23:50:16] 2025-07-28 03:50:16,764 [wrapper] Test setup, not cleaning
[2025-07-27 23:50:16] 2025-07-28 03:50:16,766 [wrapper] apfmon messages muted
[2025-07-27 23:50:16] 2025-07-28 03:50:16,769 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:50:16] 2025-07-28 03:50:16,771 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:50:16]  *** Error codes and diagnostics ***
[2025-07-27 23:50:16]     "exeErrorCode": 0,
[2025-07-27 23:50:16]     "exeErrorDiag": "",
[2025-07-27 23:50:16]     "pilotErrorCode": 0,
[2025-07-27 23:50:16]     "pilotErrorDiag": "",
[2025-07-27 23:50:16]  *** Listing of results directory ***
[2025-07-27 23:50:16] total 356276
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:41 pilot3.tar.gz
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:49 queuedata.json
[2025-07-27 23:50:16] -rwx------. 1 boincer umatlas     36292 Jul 27 10:50 runpilot2-wrapper.sh
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:50:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:56 run_atlas
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:56 job.xml
[2025-07-27 23:50:16] -rw-r--r--. 2 boincer umatlas 147637946 Jul 27 22:56 EVNT.45743347._002794.pool.root.1
[2025-07-27 23:50:16] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:56 shared
[2025-07-27 23:50:16] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 22:56 input.tar.gz
[2025-07-27 23:50:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:56 start_atlas.sh
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:56 boinc_lockfile
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 22:56 pandaJob.out
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas    980125 Jul 27 22:56 agis_schedconf.cvmfs.json
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:56 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:50:16] drwx------. 4 boincer umatlas      4096 Jul 27 22:56 pilot3
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas      7173 Jul 27 23:47 init_data.xml
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas       529 Jul 27 23:49 boinc_task_state.xml
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas 212084587 Jul 27 23:49 HITS.45743349._050200.pool.root.1
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas      1027 Jul 27 23:49 memory_monitor_summary.json
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas    283619 Jul 27 23:49 log.45743349._050200.job.log.tgz.1
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas        95 Jul 27 23:49 pilot_heartbeat.json
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas      7763 Jul 27 23:49 heartbeat.json
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 23:50 boinc_mmap_file
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas        27 Jul 27 23:50 wrapper_checkpoint.txt
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas       938 Jul 27 23:50 pilotlog.txt
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas    330740 Jul 27 23:50 log.45743349._050200.job.log.1
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas       357 Jul 27 23:50 output.list
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas       620 Jul 27 23:50 runtime_log
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas    634880 Jul 27 23:50 result.tar.gz
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 23:50 runtime_log.err
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas       651 Jul 27 23:50 1aRLDmPtH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnaVLDmzNVvLm.diag
[2025-07-27 23:50:16] -rw-r--r--. 1 boincer umatlas     21704 Jul 27 23:50 stderr.txt
[2025-07-27 23:50:16] HITS file was successfully produced:
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas 212084587 Jul 27 23:49 shared/HITS.pool.root.1
[2025-07-27 23:50:16]  *** Contents of shared directory: ***
[2025-07-27 23:50:16] total 352468
[2025-07-27 23:50:16] -rw-r--r--. 2 boincer umatlas 147637946 Jul 27 22:56 ATLAS.root_0
[2025-07-27 23:50:16] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 22:56 input.tar.gz
[2025-07-27 23:50:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:56 start_atlas.sh
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas 212084587 Jul 27 23:49 HITS.pool.root.1
[2025-07-27 23:50:16] -rw-------. 1 boincer umatlas    634880 Jul 27 23:50 result.tar.gz
23:50:18 (3827668): run_atlas exited; CPU time 23742.900163
23:50:18 (3827668): called boinc_finish(0)

</stderr_txt>
]]>

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