Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-28 06:07:39 (10176): Detected: vboxwrapper 26206
2025-07-28 06:07:39 (10176): Detected: BOINC client v8.2.4
2025-07-28 06:07:40 (10176): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-07-28 06:07:40 (10176): Successfully copied 'init_data.xml' to the shared directory.
2025-07-28 06:07:41 (10176): Create VM. (boinc_a407c380cea058f7, slot#1)
2025-07-28 06:07:41 (10176): Setting Memory Size for VM. (4000MB)
2025-07-28 06:07:41 (10176): Setting CPU Count for VM. (4)
2025-07-28 06:07:42 (10176): Setting Chipset Options for VM.
2025-07-28 06:07:42 (10176): Setting Graphics Controller Options for VM.
2025-07-28 06:07:42 (10176): Setting Boot Options for VM.
2025-07-28 06:07:42 (10176): Setting Network Configuration for NAT.
2025-07-28 06:07:43 (10176): Enabling VM Network Access.
2025-07-28 06:07:43 (10176): Disabling USB Support for VM.
2025-07-28 06:07:43 (10176): Disabling COM Port Support for VM.
2025-07-28 06:07:43 (10176): Disabling LPT Port Support for VM.
2025-07-28 06:07:44 (10176): Disabling Audio Support for VM.
2025-07-28 06:07:44 (10176): Disabling Clipboard Support for VM.
2025-07-28 06:07:44 (10176): Disabling Drag and Drop Support for VM.
2025-07-28 06:07:44 (10176): Adding storage controller(s) to VM.
2025-07-28 06:07:45 (10176): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-28 06:07:45 (10176): Adding VirtualBox Guest Additions to VM.
2025-07-28 06:07:45 (10176): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-28 06:07:46 (10176): forwarding host port 61784 to guest port 80
2025-07-28 06:07:46 (10176): Enabling remote desktop for VM.
2025-07-28 06:07:46 (10176): Required extension pack not installed, remote desktop not enabled.
2025-07-28 06:07:46 (10176): Enabling shared directory for VM.
2025-07-28 06:07:47 (10176): Starting VM using VBoxManage interface. (boinc_a407c380cea058f7, slot#1)
2025-07-28 06:07:51 (10176): Successfully started VM. (PID = '16380')
2025-07-28 06:07:51 (10176): Reporting VM Process ID to BOINC.
2025-07-28 06:07:51 (10176): Guest Log: BIOS: VirtualBox 7.1.10
2025-07-28 06:07:51 (10176): Guest Log: CPUID EDX: 0x178bfbff
2025-07-28 06:07:51 (10176): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-28 06:07:51 (10176): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-28 06:07:51 (10176): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-28 06:07:51 (10176): Detected: Web Application Enabled (http://localhost:61784)
2025-07-28 06:07:51 (10176): Preference change detected
2025-07-28 06:07:51 (10176): Setting CPU throttle for VM. (100%)
2025-07-28 06:07:51 (10176): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 480 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-28 06:07:53 (10176): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-28 06:07:53 (10176): Guest Log: BIOS: Booting from Hard Disk...
2025-07-28 06:07:56 (10176): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-28 06:07:56 (10176): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-28 06:07:56 (10176): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-28 06:08:00 (10176): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-28 06:08:00 (10176): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-28 06:08:04 (10176): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-28 06:08:04 (10176): Guest Log: 00:00:00.000119 main     Log opened 2025-07-28T06:08:02.190533000Z
2025-07-28 06:08:04 (10176): Guest Log: 00:00:00.000197 main     OS Product: Linux
2025-07-28 06:08:04 (10176): Guest Log: 00:00:00.000246 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-28 06:08:04 (10176): Guest Log: 00:00:00.000267 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-28 06:08:04 (10176): Guest Log: 00:00:00.000285 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-28 06:08:04 (10176): Guest Log: 00:00:00.000285 main     Process ID: 1309
2025-07-28 06:08:04 (10176): Guest Log: 00:00:00.000286 main     Package type: LINUX_64BITS_GENERIC
2025-07-28 06:08:04 (10176): Guest Log: 00:00:00.000803 main     5.2.32 r132073 started. Verbose level = 0
2025-07-28 06:08:04 (10176): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-28 06:08:04 (10176): Guest Log: [INFO] Mounting shared directory
2025-07-28 06:08:04 (10176): Guest Log: [INFO] Checking for init_data.xml
2025-07-28 06:08:08 (10176): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-28 06:08:08 (10176): Guest Log: [INFO] Detected branch: prod
2025-07-28 06:08:08 (10176): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-28 06:08:08 (10176): Guest Log: Copying input files
2025-07-28 06:08:08 (10176): Guest Log: Copied input files into RunAtlas.
2025-07-28 06:08:08 (10176): Guest Log: Detected user-configured HTTP proxy at http://treacle:3128 - will set in /etc/cvmfs/default.local
2025-07-28 06:08:14 (10176): Guest Log: 00:00:10.002299 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 288 548 000ns (GuestNow=1 753 679 293 903 545 000 ns GuestLast=1 753 682 882 192 093 000 ns fSetTimeLastLoop=true )
2025-07-28 06:09:22 (10176): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-28 06:09:22 (10176): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-28 06:09:22 (10176): Guest Log: 2.6.3.0 1587 1 29592 148836 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2025-07-28 06:09:23 (10176): Guest Log: copied the webapp to /var/www
2025-07-28 06:09:23 (10176): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-28 06:09:23 (10176): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-28 06:09:23 (10176): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-28 06:09:23 (10176): Guest Log:  *** Starting ATLAS job. (PandaID=6747678638 taskID=45743349) ***
2025-07-28 07:20:48 (10176): Guest Log:  *** Job finished ***
2025-07-28 07:20:48 (10176): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:31,221 | INFO     | end of generic workflow (traces error code: 0)
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:31,221 | INFO     | traces error code: 0
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:31,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,474 | INFO     | PID=5944 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,474 | INFO     | found 0 job(s) in 20 queues
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,474 | CRITICAL | thread 'MainThread' is not alive
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,474 | INFO     | [monitor] control thread has ended
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,512 [wrapper] ==== pilot stdout END ====
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,517 [wrapper] ==== wrapper stdout RESUME ====
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,520 [wrapper] pilotpid: 5944
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,522 [wrapper] Pilot exit status: 0
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,626 [wrapper] pandaids: 6747678638
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,640 [wrapper] cleanup supervisor_pilot 21718 5945
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,643 [wrapper] Test setup, not cleaning
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,645 [wrapper] apfmon messages muted
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,647 [wrapper] ==== wrapper stdout END ====
2025-07-28 07:20:48 (10176): Guest Log: 2025-07-28 06:20:47,649 [wrapper] ==== wrapper stderr END ====
2025-07-28 07:20:48 (10176): Guest Log:  *** Error codes and diagnostics ***
2025-07-28 07:20:48 (10176): Guest Log:     "exeErrorCode": 0,
2025-07-28 07:20:48 (10176): Guest Log:     "exeErrorDiag": "",
2025-07-28 07:20:48 (10176): Guest Log:     "pilotErrorCode": 0,
2025-07-28 07:20:48 (10176): Guest Log:     "pilotErrorDiag": "",
2025-07-28 07:20:48 (10176): Guest Log:  *** Listing of results directory ***
2025-07-28 07:20:48 (10176): Guest Log: total 202904
2025-07-28 07:20:48 (10176): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 27 19:51 pilot3.tar.gz
2025-07-28 07:20:48 (10176): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 27 20:01 runpilot2-wrapper.sh
2025-07-28 07:20:48 (10176): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 27 20:01 queuedata.json
2025-07-28 07:20:48 (10176): Guest Log: -rwxr-xr-x. 1 atlas atlas      9084 Jul 28 05:08 init_data.xml
2025-07-28 07:20:48 (10176): Guest Log: -rwxr-xr-x. 1 atlas atlas    542890 Jul 28 05:08 input.tar.gz
2025-07-28 07:20:48 (10176): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 28 05:08 start_atlas.sh
2025-07-28 07:20:48 (10176): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 28 05:08 EVNT.45743347._002983.pool.root.1 -> /data/./ATLAS.root_0
2025-07-28 07:20:48 (10176): Guest Log: -rw-r--r--. 1 atlas atlas      2563 Jul 28 05:09 pandaJob.out
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 28 05:12 agis_schedconf.cvmfs.json
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 28 05:12 agis_ddmendpoints.agis.ALL.json
2025-07-28 07:20:48 (10176): Guest Log: drwx------. 4 atlas atlas      4096 Jul 28 05:12 pilot3
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas 202774795 Jul 28 06:19 HITS.45743349._055050.pool.root.1
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas      1029 Jul 28 06:19 memory_monitor_summary.json
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas    227023 Jul 28 06:19 log.45743349._055050.job.log.tgz.1
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas        95 Jul 28 06:20 pilot_heartbeat.json
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas      7773 Jul 28 06:20 heartbeat.json
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas       814 Jul 28 06:20 pilotlog.txt
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas    372059 Jul 28 06:20 log.45743349._055050.job.log.1
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas       357 Jul 28 06:20 output.list
2025-07-28 07:20:48 (10176): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 28 06:20 runtime_log
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas    614400 Jul 28 06:20 result.tar.gz
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas       663 Jul 28 06:20 pSAMDm2jM07n9Rq4apOajLDm4fhM0noT9bVof3QYDms32KDmt1k12n.diag
2025-07-28 07:20:48 (10176): Guest Log: -rw-r--r--. 1 atlas atlas      8619 Jul 28 06:20 runtime_log.err
2025-07-28 07:20:48 (10176): Guest Log: Looking for outputfile HITS.45743349._055050.pool.root.1
2025-07-28 07:20:48 (10176): Guest Log: HITS file was successfully produced
2025-07-28 07:20:48 (10176): Guest Log: -rw-------. 1 atlas atlas 202774795 Jul 28 06:19 /home/atlas/RunAtlas/HITS.45743349._055050.pool.root.1
2025-07-28 07:20:49 (10176): Guest Log: Successfully finished the ATLAS job!
2025-07-28 07:20:49 (10176): Guest Log: Copying the results back to the shared directory!
2025-07-28 07:20:49 (10176): Guest Log:  *** Contents of shared directory: ***
2025-07-28 07:20:49 (10176): Guest Log: total 339728
2025-07-28 07:20:49 (10176): Guest Log: -rwxrwxrwx. 1 root root 143914410 Jul 28 05:07 ATLAS.root_0
2025-07-28 07:20:49 (10176): Guest Log: -rwxrwxrwx. 1 root root 202774795 Jul 28 06:20 HITS.pool.root.1
2025-07-28 07:20:49 (10176): Guest Log: -rwxrwxrwx. 1 root root      9084 Jul 28 05:07 init_data.xml
2025-07-28 07:20:49 (10176): Guest Log: -rwxrwxrwx. 1 root root    542890 Jul 28 03:20 input.tar.gz
2025-07-28 07:20:49 (10176): Guest Log: -rwxrwxrwx. 1 root root    614400 Jul 28 06:20 result.tar.gz
2025-07-28 07:20:49 (10176): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 28 03:20 start_atlas.sh
2025-07-28 07:20:49 (10176): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-28 07:20:49 (10176): VM Completion File Detected.
2025-07-28 07:20:49 (10176): Powering off VM.
2025-07-28 07:20:49 (10176): Successfully stopped VM.
2025-07-28 07:20:49 (10176): Deregistering VM. (boinc_a407c380cea058f7, slot#1)
2025-07-28 07:20:49 (10176): Removing network bandwidth throttle group from VM.
2025-07-28 07:20:49 (10176): Removing VM from VirtualBox.
07:20:55 (10176): called boinc_finish(0)

</stderr_txt>
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