Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:17:14 (3848148): wrapper (7.7.26015): starting
01:17:14 (3848148): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 01:17:14] Arguments: --nthreads 12
[2025-07-28 01:17:14] Threads: 12
[2025-07-28 01:17:14] Checking for CVMFS
[2025-07-28 01:17:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 01:17:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 01:17:15] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 01:17:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 01:17:15] 2.12.6.0 240040 19373 303460 148837 2 62 31140047 32935936 11887 16776704 1 60922470 99.753 59678981 11058 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 01:17:15] CVMFS is ok
[2025-07-28 01:17:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 01:17:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 01:17:15] Further information can be found at the LHC@home message board.
[2025-07-28 01:17:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 01:17:15] Checking for apptainer binary...
[2025-07-28 01:17:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 01:17:15] Running /usr/bin/apptainer --version
[2025-07-28 01:17:15] apptainer version 1.4.1-1.el9
[2025-07-28 01:17:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 01:17:16] c6-1-24-2.aglt2.org
[2025-07-28 01:17:16] apptainer works
[2025-07-28 01:17:16] Set ATHENA_PROC_NUMBER=12
[2025-07-28 01:17:16] Set ATHENA_CORE_NUMBER=12
[2025-07-28 01:17:16] Starting ATLAS job with PandaID=6747579295
[2025-07-28 01:17:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 03:38:01]  *** The last 200 lines of the pilot log: ***
[2025-07-28 03:38:01] 2025-07-28 07:37:24,991 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 03:38:01] 2025-07-28 07:37:27,482 | INFO     | monitor loop #569: job 0:6747579295 is in state 'finished'
[2025-07-28 03:38:01] 2025-07-28 07:37:27,483 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 03:38:01] 2025-07-28 07:37:28,505 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 03:38:01] 2025-07-28 07:37:28,510 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2788.187214285714
[2025-07-28 03:38:01] 2025-07-28 07:37:28,520 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747579295/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 03:38:01] 2025-07-28 07:37:28,520 | INFO     | extracted standard info from prmon json
[2025-07-28 03:38:01] 2025-07-28 07:37:28,520 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 03:38:01] 2025-07-28 07:37:28,520 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 03:38:01] 2025-07-28 07:37:28,521 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 03:38:01] 2025-07-28 07:37:28,521 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 03:38:01] 2025-07-28 07:37:28,523 | INFO     | fitting pss+swap vs Time
[2025-07-28 03:38:01] 2025-07-28 07:37:28,524 | INFO     | sum of square deviations: 797159741.897809
[2025-07-28 03:38:01] 2025-07-28 07:37:28,524 | INFO     | sum of deviations: -20440265838.47444
[2025-07-28 03:38:01] 2025-07-28 07:37:28,524 | INFO     | mean x: 1753684082.2846715
[2025-07-28 03:38:01] 2025-07-28 07:37:28,525 | INFO     | mean y: 2397114.678832117
[2025-07-28 03:38:01] 2025-07-28 07:37:28,525 | INFO     | -- intersect: 44969255016.03404
[2025-07-28 03:38:01] 2025-07-28 07:37:28,525 | INFO     | intersect: 44969255016.03404
[2025-07-28 03:38:01] 2025-07-28 07:37:28,525 | INFO     | chi2: 2.744399155878727
[2025-07-28 03:38:01] 2025-07-28 07:37:28,525 | INFO     | sum of square deviations: 713021221.4772751
[2025-07-28 03:38:01] 2025-07-28 07:37:28,526 | INFO     | sum of deviations: -10807124470.045452
[2025-07-28 03:38:01] 2025-07-28 07:37:28,526 | INFO     | mean x: 1753683929.7954545
[2025-07-28 03:38:01] 2025-07-28 07:37:28,526 | INFO     | mean y: 2414122.257575758
[2025-07-28 03:38:01] 2025-07-28 07:37:28,526 | INFO     | -- intersect: 26582661581.30457
[2025-07-28 03:38:01] 2025-07-28 07:37:28,526 | INFO     | intersect: 26582661581.30457
[2025-07-28 03:38:01] 2025-07-28 07:37:28,526 | INFO     | chi2: 2.079356684588869
[2025-07-28 03:38:01] 2025-07-28 07:37:28,526 | INFO     | current chi2=2.079356684588869 (change=24.232716653671996 %)
[2025-07-28 03:38:01] 2025-07-28 07:37:28,526 | INFO     | right removable region: 131
[2025-07-28 03:38:01] 2025-07-28 07:37:28,527 | INFO     | sum of square deviations: 712997431.4772751
[2025-07-28 03:38:01] 2025-07-28 07:37:28,527 | INFO     | sum of deviations: -43251977599.97728
[2025-07-28 03:38:01] 2025-07-28 07:37:28,527 | INFO     | mean x: 1753684234.7954545
[2025-07-28 03:38:01] 2025-07-28 07:37:28,527 | INFO     | mean y: 2437918.037878788
[2025-07-28 03:38:01] 2025-07-28 07:37:28,527 | INFO     | -- intersect: 106384744350.26492
[2025-07-28 03:38:01] 2025-07-28 07:37:28,527 | INFO     | intersect: 106384744350.26492
[2025-07-28 03:38:01] 2025-07-28 07:37:28,528 | INFO     | chi2: 1.0298496100774852
[2025-07-28 03:38:01] 2025-07-28 07:37:28,528 | INFO     | current chi2=1.0298496100774852 (change=62.47449617992108 %)
[2025-07-28 03:38:01] 2025-07-28 07:37:28,528 | INFO     | sum of square deviations: 634998681.7952778
[2025-07-28 03:38:01] 2025-07-28 07:37:28,528 | INFO     | sum of deviations: -41750596661.57478
[2025-07-28 03:38:01] 2025-07-28 07:37:28,528 | INFO     | mean x: 1753684387.2834647
[2025-07-28 03:38:01] 2025-07-28 07:37:28,529 | INFO     | mean y: 2434878.4881889764
[2025-07-28 03:38:01] 2025-07-28 07:37:28,529 | INFO     | -- intersect: 115305618371.99023
[2025-07-28 03:38:01] 2025-07-28 07:37:28,529 | INFO     | intersect: 115305618371.99023
[2025-07-28 03:38:01] 2025-07-28 07:37:28,529 | INFO     | chi2: 0.9969718999075219
[2025-07-28 03:38:01] 2025-07-28 07:37:28,529 | INFO     | current chi2=0.9969718999075219 (change=3.192476828484659 %)
[2025-07-28 03:38:01] 2025-07-28 07:37:28,529 | INFO     | left removable region: 20
[2025-07-28 03:38:01] 2025-07-28 07:37:28,529 | INFO     | sum of square deviations: 423957465.42342335
[2025-07-28 03:38:01] 2025-07-28 07:37:28,530 | INFO     | sum of deviations: -24846031326.52251
[2025-07-28 03:38:01] 2025-07-28 07:37:28,530 | INFO     | mean x: 1753684509.2612612
[2025-07-28 03:38:01] 2025-07-28 07:37:28,530 | INFO     | mean y: 2438385.018018018
[2025-07-28 03:38:01] 2025-07-28 07:37:28,530 | INFO     | -- intersect: 102777135866.58105
[2025-07-28 03:38:01] 2025-07-28 07:37:28,530 | INFO     | intersect: 102777135866.58105
[2025-07-28 03:38:01] 2025-07-28 07:37:28,530 | INFO     | chi2: 0.2823325653235498
[2025-07-28 03:38:01] 2025-07-28 07:37:28,530 | INFO     | -- intersect: 102777135866.58105
[2025-07-28 03:38:01] 2025-07-28 07:37:28,530 | INFO     | current memory leak: -58.61 B/s (using 111 data points, chi2=0.28)
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | could have reported an average CPU frequency of 2693 MHz (8 samples)
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | ..............................
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | . Timing measurements:
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | . get job = 0 s
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | . initial setup = 2 s
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | . payload setup = 18 s
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | . stage-in = 0 s
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | . payload execution = 8317 s
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | . stage-out = 1 s
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | . log creation = 0 s
[2025-07-28 03:38:01] 2025-07-28 07:37:28,531 | INFO     | ..............................
[2025-07-28 03:38:01] 2025-07-28 07:37:28,744 | INFO     | 
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | job summary report
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | --------------------------------------------------
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | PanDA job id: 6747579295
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | task id: 45743349
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | errors: (none)
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | pilot state: finished 
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | transexitcode: 0
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | exeerrorcode: 0
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | exeerrordiag: 
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | exitcode: 0
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | exitmsg: OK
[2025-07-28 03:38:01] 2025-07-28 07:37:28,745 | INFO     | cpuconsumptiontime: 49588 s
[2025-07-28 03:38:01] 2025-07-28 07:37:28,746 | INFO     | nevents: 400
[2025-07-28 03:38:01] 2025-07-28 07:37:28,746 | INFO     | neventsw: 0
[2025-07-28 03:38:01] 2025-07-28 07:37:28,746 | INFO     | pid: 3863110
[2025-07-28 03:38:01] 2025-07-28 07:37:28,746 | INFO     | pgrp: 3863110
[2025-07-28 03:38:01] 2025-07-28 07:37:28,746 | INFO     | corecount: 12
[2025-07-28 03:38:01] 2025-07-28 07:37:28,746 | INFO     | event service: False
[2025-07-28 03:38:01] 2025-07-28 07:37:28,746 | INFO     | sizes: {0: 2396596, 1: 2397281, 2: 2397480, 13: 2397480, 15: 2397798, 24: 2397826, 8340: 2425720, 8342: 2434718, 8344: 2434774, 8348: 2434968}
[2025-07-28 03:38:01] 2025-07-28 07:37:28,746 | INFO     | --------------------------------------------------
[2025-07-28 03:38:01] 2025-07-28 07:37:28,746 | INFO     | 
[2025-07-28 03:38:01] 2025-07-28 07:37:28,746 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 03:38:01] 2025-07-28 07:37:28,768 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,769 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,770 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,770 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 03:38:01] 2025-07-28 07:37:28,770 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,770 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 03:38:01] 2025-07-28 07:37:28,770 | INFO     | job 6747579295 has completed (purged errors)
[2025-07-28 03:38:01] 2025-07-28 07:37:28,770 | INFO     | overall cleanup function is called
[2025-07-28 03:38:01] 2025-07-28 07:37:29,778 | INFO     | --- collectZombieJob: --- 10, [3863110]
[2025-07-28 03:38:01] 2025-07-28 07:37:29,778 | INFO     | zombie collector waiting for pid 3863110
[2025-07-28 03:38:01] 2025-07-28 07:37:29,779 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 03:38:01] 2025-07-28 07:37:29,779 | INFO     | collected zombie processes
[2025-07-28 03:38:01] 2025-07-28 07:37:29,779 | INFO     | will attempt to kill all subprocesses of pid=3863110
[2025-07-28 03:38:01] 2025-07-28 07:37:30,058 | INFO     | process IDs to be killed: [3863110] (in reverse order)
[2025-07-28 03:38:01] 2025-07-28 07:37:30,155 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 03:38:01] 2025-07-28 07:37:30,156 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 03:38:01] 2025-07-28 07:37:30,168 | INFO     | did not find any defunct processes belonging to 3863110
[2025-07-28 03:38:01] 2025-07-28 07:37:30,180 | INFO     | did not find any defunct processes belonging to 3863110
[2025-07-28 03:38:01] 2025-07-28 07:37:30,180 | INFO     | ready for new job
[2025-07-28 03:38:01] 2025-07-28 07:37:30,180 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 03:38:01] 2025-07-28 07:37:30,182 | INFO     | ***************************************
[2025-07-28 03:38:01] 2025-07-28 07:37:30,182 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 03:38:01] 2025-07-28 07:37:30,182 | INFO     | ***************************************
[2025-07-28 03:38:01] 2025-07-28 07:37:30,182 | INFO     | 
[2025-07-28 03:38:01] 2025-07-28 07:37:30,197 | INFO     | architecture information:
[2025-07-28 03:38:01] 2025-07-28 07:37:30,197 | INFO     | executing command: cat /etc/os-release
[2025-07-28 03:38:01] 2025-07-28 07:37:30,212 | INFO     | cat /etc/os-release:
[2025-07-28 03:38:01] NAME="CentOS Linux"
[2025-07-28 03:38:01] VERSION="7 (Core)"
[2025-07-28 03:38:01] ID="centos"
[2025-07-28 03:38:01] ID_LIKE="rhel fedora"
[2025-07-28 03:38:01] VERSION_ID="7"
[2025-07-28 03:38:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 03:38:01] ANSI_COLOR="0;31"
[2025-07-28 03:38:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 03:38:01] HOME_URL="https://www.centos.org/"
[2025-07-28 03:38:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 03:38:01] 
[2025-07-28 03:38:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 03:38:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 03:38:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 03:38:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 03:38:01] 
[2025-07-28 03:38:01] 2025-07-28 07:37:30,212 | INFO     | ***************************************
[2025-07-28 03:38:01] 2025-07-28 07:37:30,715 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 03:38:01] 2025-07-28 07:37:30,733 | INFO     | sufficient remaining disk space (76529270784 B)
[2025-07-28 03:38:01] 2025-07-28 07:37:30,733 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 03:38:01] 2025-07-28 07:37:30,733 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 03:38:01] 2025-07-28 07:37:30,733 | INFO     | update_server=False
[2025-07-28 03:38:01] 2025-07-28 07:37:30,733 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 03:38:01] 2025-07-28 07:37:30,734 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 03:38:01] 2025-07-28 07:37:30,823 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 03:38:01] 2025-07-28 07:37:30,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 03:38:01] 2025-07-28 07:37:30,990 | INFO     | aborting loop
[2025-07-28 03:38:01] 2025-07-28 07:37:31,242 | INFO     | all data control threads have been joined
[2025-07-28 03:38:01] 2025-07-28 07:37:31,739 | INFO     | [job] retrieve thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:31,768 | INFO     | [payload] validate_post thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:31,918 | INFO     | [payload] failed_post thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:31,941 | INFO     | all payload control threads have been joined
[2025-07-28 03:38:01] 2025-07-28 07:37:31,995 | INFO     | [job] job monitor thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:32,248 | INFO     | [data] control thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:32,279 | INFO     | all job control threads have been joined
[2025-07-28 03:38:01] 2025-07-28 07:37:32,597 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:32,676 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:32,739 | INFO     | [data] copytool_out thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:32,821 | INFO     | [job] validate thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:32,946 | INFO     | [payload] control thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:32,989 | INFO     | [data] copytool_in thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:33,171 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:33,285 | INFO     | [job] control thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:33,626 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 03:38:01] 2025-07-28 07:37:34,631 | INFO     | [job] queue monitor thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:34,828 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:40,941 | INFO     | job.realtimelogging is not enabled
[2025-07-28 03:38:01] 2025-07-28 07:37:41,946 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 03:38:01] 2025-07-28 07:37:43,278 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944817317696)>', '<ExcThread(monitor, started 139944544671488)>']
[2025-07-28 03:38:01] 2025-07-28 07:37:48,302 | INFO     | all workflow threads have been joined
[2025-07-28 03:38:01] 2025-07-28 07:37:48,303 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 03:38:01] 2025-07-28 07:37:48,303 | INFO     | traces error code: 0
[2025-07-28 03:38:01] 2025-07-28 07:37:48,303 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 03:38:01] 2025-07-28 07:38:00,721 | INFO     | PID=3853622 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 03:38:01] 2025-07-28 07:38:00,722 | INFO     | .. there are 16 such processes running
[2025-07-28 03:38:01] 2025-07-28 07:38:00,723 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 03:38:01] 2025-07-28 07:38:00,723 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 03:38:01] 2025-07-28 07:38:00,723 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 03:38:01] 2025-07-28 07:38:00,723 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 03:38:01] 2025-07-28 07:38:00,723 | INFO     | [monitor] control thread has ended
[2025-07-28 03:38:01] 2025-07-28 07:38:00,874 [wrapper] ==== pilot stdout END ====
[2025-07-28 03:38:01] 2025-07-28 07:38:00,876 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 03:38:01] 2025-07-28 07:38:00,878 [wrapper] pilotpid: 3853622
[2025-07-28 03:38:01] 2025-07-28 07:38:00,880 [wrapper] Pilot exit status: 0
[2025-07-28 03:38:01] 2025-07-28 07:38:00,890 [wrapper] pandaids: 6747579295
[2025-07-28 03:38:01] 2025-07-28 07:38:00,963 [wrapper] cleanup supervisor_pilot  466764 3853623
[2025-07-28 03:38:01] 2025-07-28 07:38:00,967 [wrapper] Test setup, not cleaning
[2025-07-28 03:38:01] 2025-07-28 07:38:00,970 [wrapper] apfmon messages muted
[2025-07-28 03:38:01] 2025-07-28 07:38:00,973 [wrapper] ==== wrapper stdout END ====
[2025-07-28 03:38:01] 2025-07-28 07:38:00,976 [wrapper] ==== wrapper stderr END ====
[2025-07-28 03:38:01]  *** Error codes and diagnostics ***
[2025-07-28 03:38:01]     "exeErrorCode": 0,
[2025-07-28 03:38:01]     "exeErrorDiag": "",
[2025-07-28 03:38:01]     "pilotErrorCode": 0,
[2025-07-28 03:38:01]     "pilotErrorDiag": "",
[2025-07-28 03:38:01]  *** Listing of results directory ***
[2025-07-28 03:38:01] total 350004
[2025-07-28 03:38:01] -rwx------. 1 boincer umatlas     36292 Jul 27 14:08 runpilot2-wrapper.sh
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:08 queuedata.json
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 14:08 pilot3.tar.gz
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas       100 Jul 28 01:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 03:38:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 01:17 run_atlas
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas       105 Jul 28 01:17 job.xml
[2025-07-28 03:38:01] -rw-r--r--. 2 boincer umatlas 144225872 Jul 28 01:17 EVNT.45743347._002927.pool.root.1
[2025-07-28 03:38:01] -rw-r--r--. 2 boincer umatlas    542881 Jul 28 01:17 input.tar.gz
[2025-07-28 03:38:01] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 01:17 start_atlas.sh
[2025-07-28 03:38:01] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 01:17 shared
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas         0 Jul 28 01:17 boinc_lockfile
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 01:17 pandaJob.out
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas    980125 Jul 28 01:17 agis_schedconf.cvmfs.json
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas   1593052 Jul 28 01:17 agis_ddmendpoints.agis.ALL.json
[2025-07-28 03:38:01] drwx------. 4 boincer umatlas      4096 Jul 28 01:17 pilot3
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas      6843 Jul 28 03:36 init_data.xml
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas 207988699 Jul 28 03:36 HITS.45743349._053481.pool.root.1
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas       530 Jul 28 03:36 boinc_task_state.xml
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas      1041 Jul 28 03:37 memory_monitor_summary.json
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas    405057 Jul 28 03:37 log.45743349._053481.job.log.tgz.1
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas      7827 Jul 28 03:37 heartbeat.json
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 03:37 boinc_mmap_file
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas        27 Jul 28 03:37 wrapper_checkpoint.txt
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas        95 Jul 28 03:38 pilot_heartbeat.json
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas       823 Jul 28 03:38 pilotlog.txt
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas    750285 Jul 28 03:38 log.45743349._053481.job.log.1
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas       357 Jul 28 03:38 output.list
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas       620 Jul 28 03:38 runtime_log
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas   1177600 Jul 28 03:38 result.tar.gz
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 03:38 runtime_log.err
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas       654 Jul 28 03:38 1gxLDmtyK07n9Rq4apOajLDm4fhM0noT9bVof3QYDmwt2KDmWAS5Io.diag
[2025-07-28 03:38:01] -rw-r--r--. 1 boincer umatlas     21332 Jul 28 03:38 stderr.txt
[2025-07-28 03:38:01] HITS file was successfully produced:
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas 207988699 Jul 28 03:36 shared/HITS.pool.root.1
[2025-07-28 03:38:01]  *** Contents of shared directory: ***
[2025-07-28 03:38:01] total 345668
[2025-07-28 03:38:01] -rw-r--r--. 2 boincer umatlas 144225872 Jul 28 01:17 ATLAS.root_0
[2025-07-28 03:38:01] -rw-r--r--. 2 boincer umatlas    542881 Jul 28 01:17 input.tar.gz
[2025-07-28 03:38:01] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 01:17 start_atlas.sh
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas 207988699 Jul 28 03:36 HITS.pool.root.1
[2025-07-28 03:38:01] -rw-------. 1 boincer umatlas   1177600 Jul 28 03:38 result.tar.gz
03:38:02 (3848148): run_atlas exited; CPU time 49730.703294
03:38:02 (3848148): called boinc_finish(0)

</stderr_txt>
]]>

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