Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
00:54:20 (143546): wrapper (7.7.26015): starting
00:54:20 (143546): wrapper: running run_atlas (--nthreads 4)
[2025-07-28 00:54:20] Arguments: --nthreads 4
[2025-07-28 00:54:20] Threads: 4
[2025-07-28 00:54:20] Checking for CVMFS
[2025-07-28 00:54:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 00:54:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 00:54:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 00:54:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 00:54:20] 2.13.1.0 3792798 268 50504 148836 3 188 3245148 4096001 4701 130560 0 1521018 99.998 9230 2189 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.174:3128 1
[2025-07-28 00:54:20] CVMFS is ok
[2025-07-28 00:54:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 00:54:20] Checking for apptainer binary...
[2025-07-28 00:54:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 00:54:20] Running /usr/bin/apptainer --version
[2025-07-28 00:54:20] apptainer version 1.4.1
[2025-07-28 00:54:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 00:54:20] X-32-ubuntu
[2025-07-28 00:54:20] apptainer works
[2025-07-28 00:54:20] Set ATHENA_PROC_NUMBER=4
[2025-07-28 00:54:20] Set ATHENA_CORE_NUMBER=4
[2025-07-28 00:54:20] Starting ATLAS job with PandaID=6747599855
[2025-07-28 00:54:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 03:09:06]  *** The last 200 lines of the pilot log: ***
[2025-07-28 03:09:06] 2025-07-28 07:08:33,281 | INFO     | extracted standard info from prmon json
[2025-07-28 03:09:06] 2025-07-28 07:08:33,281 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 03:09:06] 2025-07-28 07:08:33,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 03:09:06] 2025-07-28 07:08:33,281 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 03:09:06] 2025-07-28 07:08:33,281 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 03:09:06] 2025-07-28 07:08:33,283 | INFO     | fitting pss+swap vs Time
[2025-07-28 03:09:06] 2025-07-28 07:08:33,283 | INFO     | sum of square deviations: 713140813.0
[2025-07-28 03:09:06] 2025-07-28 07:08:33,284 | INFO     | sum of deviations: 13475557946.0
[2025-07-28 03:09:06] 2025-07-28 07:08:33,284 | INFO     | mean x: 1753682479.5
[2025-07-28 03:09:06] 2025-07-28 07:08:33,284 | INFO     | mean y: 2297617.484848485
[2025-07-28 03:09:06] 2025-07-28 07:08:33,284 | INFO     | -- intersect: -33135407363.91159
[2025-07-28 03:09:06] 2025-07-28 07:08:33,284 | INFO     | intersect: -33135407363.91159
[2025-07-28 03:09:06] 2025-07-28 07:08:33,284 | INFO     | chi2: 1.0962935361317991
[2025-07-28 03:09:06] 2025-07-28 07:08:33,284 | INFO     | sum of square deviations: 635130048.0
[2025-07-28 03:09:06] 2025-07-28 07:08:33,285 | INFO     | sum of deviations: 12881446188.999998
[2025-07-28 03:09:06] 2025-07-28 07:08:33,285 | INFO     | mean x: 1753682327.0
[2025-07-28 03:09:06] 2025-07-28 07:08:33,285 | INFO     | mean y: 2296456.31496063
[2025-07-28 03:09:06] 2025-07-28 07:08:33,285 | INFO     | -- intersect: -35565166615.202
[2025-07-28 03:09:06] 2025-07-28 07:08:33,285 | INFO     | intersect: -35565166615.202
[2025-07-28 03:09:06] 2025-07-28 07:08:33,285 | INFO     | chi2: 1.0974582036180167
[2025-07-28 03:09:06] 2025-07-28 07:08:33,285 | INFO     | current chi2=1.0974582036180167 (change=-0.10623682871715437 %)
[2025-07-28 03:09:06] 2025-07-28 07:08:33,285 | INFO     | right removable region: 126
[2025-07-28 03:09:06] 2025-07-28 07:08:33,285 | INFO     | sum of square deviations: 635130048.0
[2025-07-28 03:09:06] 2025-07-28 07:08:33,286 | INFO     | sum of deviations: 566311983.0000004
[2025-07-28 03:09:06] 2025-07-28 07:08:33,286 | INFO     | mean x: 1753682632.0
[2025-07-28 03:09:06] 2025-07-28 07:08:33,286 | INFO     | mean y: 2322269.102362205
[2025-07-28 03:09:06] 2025-07-28 07:08:33,286 | INFO     | -- intersect: -1561344088.6898925
[2025-07-28 03:09:06] 2025-07-28 07:08:33,286 | INFO     | intersect: -1561344088.6898925
[2025-07-28 03:09:06] 2025-07-28 07:08:33,286 | INFO     | chi2: 0.0026513907688378085
[2025-07-28 03:09:06] 2025-07-28 07:08:33,286 | INFO     | current chi2=0.0026513907688378085 (change=99.75814955744488 %)
[2025-07-28 03:09:06] 2025-07-28 07:08:33,286 | INFO     | sum of square deviations: 563026370.5
[2025-07-28 03:09:06] 2025-07-28 07:08:33,287 | INFO     | sum of deviations: 567035016.0000004
[2025-07-28 03:09:06] 2025-07-28 07:08:33,287 | INFO     | mean x: 1753682784.5
[2025-07-28 03:09:06] 2025-07-28 07:08:33,287 | INFO     | mean y: 2322261.0655737706
[2025-07-28 03:09:06] 2025-07-28 07:08:33,287 | INFO     | -- intersect: -1763846426.352741
[2025-07-28 03:09:06] 2025-07-28 07:08:33,287 | INFO     | intersect: -1763846426.352741
[2025-07-28 03:09:06] 2025-07-28 07:08:33,287 | INFO     | chi2: 0.0025883894765129896
[2025-07-28 03:09:06] 2025-07-28 07:08:33,287 | INFO     | current chi2=0.0025883894765129896 (change=2.376160204873702 %)
[2025-07-28 03:09:06] 2025-07-28 07:08:33,287 | INFO     | left removable region: 20
[2025-07-28 03:09:06] 2025-07-28 07:08:33,287 | INFO     | sum of square deviations: 369281342.5
[2025-07-28 03:09:06] 2025-07-28 07:08:33,288 | INFO     | sum of deviations: 1351095527.0000002
[2025-07-28 03:09:06] 2025-07-28 07:08:33,288 | INFO     | mean x: 1753682906.5
[2025-07-28 03:09:06] 2025-07-28 07:08:33,288 | INFO     | mean y: 2319653.0566037735
[2025-07-28 03:09:06] 2025-07-28 07:08:33,288 | INFO     | -- intersect: -6413907916.7088785
[2025-07-28 03:09:06] 2025-07-28 07:08:33,288 | INFO     | intersect: -6413907916.7088785
[2025-07-28 03:09:06] 2025-07-28 07:08:33,288 | INFO     | chi2: 0.00042835005458736683
[2025-07-28 03:09:06] 2025-07-28 07:08:33,288 | INFO     | -- intersect: -6413907916.7088785
[2025-07-28 03:09:06] 2025-07-28 07:08:33,288 | INFO     | current memory leak: 3.66 B/s (using 106 data points, chi2=0.00)
[2025-07-28 03:09:06] 2025-07-28 07:08:33,288 | INFO     | could have reported an average CPU frequency of 3975 MHz (8 samples)
[2025-07-28 03:09:06] 2025-07-28 07:08:33,289 | INFO     | ..............................
[2025-07-28 03:09:06] 2025-07-28 07:08:33,289 | INFO     | . Timing measurements:
[2025-07-28 03:09:06] 2025-07-28 07:08:33,289 | INFO     | . get job = 0 s
[2025-07-28 03:09:06] 2025-07-28 07:08:33,289 | INFO     | . initial setup = 1 s
[2025-07-28 03:09:06] 2025-07-28 07:08:33,289 | INFO     | . payload setup = 3 s
[2025-07-28 03:09:06] 2025-07-28 07:08:33,289 | INFO     | . stage-in = 0 s
[2025-07-28 03:09:06] 2025-07-28 07:08:33,289 | INFO     | . payload execution = 8024 s
[2025-07-28 03:09:06] 2025-07-28 07:08:33,289 | INFO     | . stage-out = 0 s
[2025-07-28 03:09:06] 2025-07-28 07:08:33,289 | INFO     | . log creation = 0 s
[2025-07-28 03:09:06] 2025-07-28 07:08:33,289 | INFO     | ..............................
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | 
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | job summary report
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | --------------------------------------------------
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | PanDA job id: 6747599855
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | task id: 45743349
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | errors: (none)
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | pilot state: finished 
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | transexitcode: 0
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | exeerrorcode: 0
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | exeerrordiag: 
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | exitcode: 0
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | exitmsg: OK
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | cpuconsumptiontime: 30908 s
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | nevents: 400
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | neventsw: 0
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | pid: 160662
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | pgrp: 160662
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | corecount: 4
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | event service: False
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | sizes: {0: 2397474, 2: 2397736, 10: 2397764, 8031: 2434606, 8035: 2434744}
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | --------------------------------------------------
[2025-07-28 03:09:06] 2025-07-28 07:08:33,694 | INFO     | 
[2025-07-28 03:09:06] 2025-07-28 07:08:33,695 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,708 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,709 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,709 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,709 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,709 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,709 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 03:09:06] 2025-07-28 07:08:33,709 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,709 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 03:09:06] 2025-07-28 07:08:33,709 | INFO     | job 6747599855 has completed (purged errors)
[2025-07-28 03:09:06] 2025-07-28 07:08:33,709 | INFO     | overall cleanup function is called
[2025-07-28 03:09:06] 2025-07-28 07:08:34,510 | WARNING  | process 160662 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 03:09:06] 2025-07-28 07:08:34,565 | INFO     | using path: /var/lib/boinc/slots/5/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 03:09:06] 2025-07-28 07:08:34,641 | INFO     | number of running child processes to parent process 160662: 1
[2025-07-28 03:09:06] 2025-07-28 07:08:34,641 | INFO     | maximum number of monitored processes: 6
[2025-07-28 03:09:06] 2025-07-28 07:08:34,641 | INFO     | aborting job monitoring since job object (job id=6747599855) has expired
[2025-07-28 03:09:06] 2025-07-28 07:08:34,716 | INFO     | --- collectZombieJob: --- 10, [160662]
[2025-07-28 03:09:06] 2025-07-28 07:08:34,716 | INFO     | zombie collector waiting for pid 160662
[2025-07-28 03:09:06] 2025-07-28 07:08:34,716 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 03:09:06] 2025-07-28 07:08:34,716 | INFO     | collected zombie processes
[2025-07-28 03:09:06] 2025-07-28 07:08:34,716 | INFO     | will attempt to kill all subprocesses of pid=160662
[2025-07-28 03:09:06] 2025-07-28 07:08:34,805 | INFO     | process IDs to be killed: [160662] (in reverse order)
[2025-07-28 03:09:06] 2025-07-28 07:08:34,843 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 03:09:06] 2025-07-28 07:08:34,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 03:09:06] 2025-07-28 07:08:34,846 | INFO     | did not find any defunct processes belonging to 160662
[2025-07-28 03:09:06] 2025-07-28 07:08:34,848 | INFO     | did not find any defunct processes belonging to 160662
[2025-07-28 03:09:06] 2025-07-28 07:08:34,848 | INFO     | ready for new job
[2025-07-28 03:09:06] 2025-07-28 07:08:34,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 03:09:06] 2025-07-28 07:08:34,849 | INFO     | ***************************************
[2025-07-28 03:09:06] 2025-07-28 07:08:34,849 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 03:09:06] 2025-07-28 07:08:34,849 | INFO     | ***************************************
[2025-07-28 03:09:06] 2025-07-28 07:08:34,849 | INFO     | 
[2025-07-28 03:09:06] 2025-07-28 07:08:34,850 | INFO     | architecture information:
[2025-07-28 03:09:06] 2025-07-28 07:08:34,851 | INFO     | executing command: cat /etc/os-release
[2025-07-28 03:09:06] 2025-07-28 07:08:34,858 | INFO     | cat /etc/os-release:
[2025-07-28 03:09:06] NAME="CentOS Linux"
[2025-07-28 03:09:06] VERSION="7 (Core)"
[2025-07-28 03:09:06] ID="centos"
[2025-07-28 03:09:06] ID_LIKE="rhel fedora"
[2025-07-28 03:09:06] VERSION_ID="7"
[2025-07-28 03:09:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 03:09:06] ANSI_COLOR="0;31"
[2025-07-28 03:09:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 03:09:06] HOME_URL="https://www.centos.org/"
[2025-07-28 03:09:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 03:09:06] 
[2025-07-28 03:09:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 03:09:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 03:09:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 03:09:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 03:09:06] 
[2025-07-28 03:09:06] 2025-07-28 07:08:34,858 | INFO     | ***************************************
[2025-07-28 03:09:06] 2025-07-28 07:08:35,361 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-07-28 03:09:06] 2025-07-28 07:08:35,370 | INFO     | sufficient remaining disk space (1821383852032 B)
[2025-07-28 03:09:06] 2025-07-28 07:08:35,370 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 03:09:06] 2025-07-28 07:08:35,370 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 03:09:06] 2025-07-28 07:08:35,370 | INFO     | update_server=False
[2025-07-28 03:09:06] 2025-07-28 07:08:35,370 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 03:09:06] 2025-07-28 07:08:35,371 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 03:09:06] 2025-07-28 07:08:35,371 | INFO     | will abort loop
[2025-07-28 03:09:06] 2025-07-28 07:08:35,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 03:09:06] 2025-07-28 07:08:35,639 | INFO     | all data control threads have been joined
[2025-07-28 03:09:06] 2025-07-28 07:08:36,147 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 03:09:06] 2025-07-28 07:08:36,217 | INFO     | all payload control threads have been joined
[2025-07-28 03:09:06] 2025-07-28 07:08:36,318 | INFO     | all job control threads have been joined
[2025-07-28 03:09:06] 2025-07-28 07:08:36,376 | INFO     | [job] retrieve thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:36,376 | INFO     | [job] job monitor thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:36,464 | INFO     | [payload] failed_post thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:36,474 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:36,597 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:36,644 | INFO     | [data] control thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:36,961 | INFO     | [data] copytool_in thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:37,184 | INFO     | [payload] validate_post thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:37,223 | INFO     | [payload] control thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:37,324 | INFO     | [job] control thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:37,617 | INFO     | [data] copytool_out thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:37,753 | INFO     | [job] validate thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:37,849 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:38,343 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 03:09:06] 2025-07-28 07:08:39,348 | INFO     | [job] queue monitor thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:40,152 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:46,247 | INFO     | job.realtimelogging is not enabled
[2025-07-28 03:09:06] 2025-07-28 07:08:47,253 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 03:09:06] 2025-07-28 07:08:49,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138204982208320)>', '<ExcThread(monitor, started 138203524757248)>']
[2025-07-28 03:09:06] 2025-07-28 07:08:54,088 | INFO     | all workflow threads have been joined
[2025-07-28 03:09:06] 2025-07-28 07:08:54,088 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 03:09:06] 2025-07-28 07:08:54,088 | INFO     | traces error code: 0
[2025-07-28 03:09:06] 2025-07-28 07:08:54,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 03:09:06] 2025-07-28 07:09:06,224 | INFO     | PID=147399 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 03:09:06] 2025-07-28 07:09:06,224 | INFO     | .. there are 4 such processes running
[2025-07-28 03:09:06] 2025-07-28 07:09:06,225 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 03:09:06] 2025-07-28 07:09:06,225 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 03:09:06] 2025-07-28 07:09:06,225 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 03:09:06] 2025-07-28 07:09:06,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 03:09:06] 2025-07-28 07:09:06,225 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 03:09:06] 2025-07-28 07:09:06,225 | INFO     | [monitor] control thread has ended
[2025-07-28 03:09:06] 2025-07-28 07:09:06,285 [wrapper] ==== pilot stdout END ====
[2025-07-28 03:09:06] 2025-07-28 07:09:06,287 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 03:09:06] 2025-07-28 07:09:06,289 [wrapper] pilotpid: 147399
[2025-07-28 03:09:06] 2025-07-28 07:09:06,290 [wrapper] Pilot exit status: 0
[2025-07-28 03:09:06] 2025-07-28 07:09:06,296 [wrapper] pandaids: 6747599855
[2025-07-28 03:09:06] 2025-07-28 07:09:06,321 [wrapper] cleanup supervisor_pilot  263987 147400
[2025-07-28 03:09:06] 2025-07-28 07:09:06,323 [wrapper] Test setup, not cleaning
[2025-07-28 03:09:06] 2025-07-28 07:09:06,324 [wrapper] apfmon messages muted
[2025-07-28 03:09:06] 2025-07-28 07:09:06,326 [wrapper] ==== wrapper stdout END ====
[2025-07-28 03:09:06] 2025-07-28 07:09:06,327 [wrapper] ==== wrapper stderr END ====
[2025-07-28 03:09:06]  *** Error codes and diagnostics ***
[2025-07-28 03:09:06]     "exeErrorCode": 0,
[2025-07-28 03:09:06]     "exeErrorDiag": "",
[2025-07-28 03:09:06]     "pilotErrorCode": 0,
[2025-07-28 03:09:06]     "pilotErrorDiag": "",
[2025-07-28 03:09:06]  *** Listing of results directory ***
[2025-07-28 03:09:06] total 351576
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc    530466 Jul 27 14:41 pilot3.tar.gz
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc      5112 Jul 27 15:09 queuedata.json
[2025-07-28 03:09:06] -rwx------ 1 boinc boinc     36292 Jul 27 15:09 runpilot2-wrapper.sh
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc       100 Jul 28 00:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 03:09:06] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 00:54 run_atlas
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc       105 Jul 28 00:54 job.xml
[2025-07-28 03:09:06] -rw-r--r-- 2 boinc boinc 145162057 Jul 28 00:54 EVNT.45743347._002900.pool.root.1
[2025-07-28 03:09:06] -rw-r--r-- 2 boinc boinc     15095 Jul 28 00:54 start_atlas.sh
[2025-07-28 03:09:06] drwxrwx--x 2 boinc boinc      4096 Jul 28 00:54 shared
[2025-07-28 03:09:06] -rw-r--r-- 2 boinc boinc    542892 Jul 28 00:54 input.tar.gz
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc      9728 Jul 28 00:54 init_data.xml
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc         0 Jul 28 00:54 boinc_setup_complete
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc         0 Jul 28 00:54 boinc_lockfile
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc      2562 Jul 28 00:54 pandaJob.out
[2025-07-28 03:09:06] -rw------- 1 boinc boinc    980125 Jul 28 00:54 agis_schedconf.cvmfs.json
[2025-07-28 03:09:06] -rw------- 1 boinc boinc   1593052 Jul 28 00:54 agis_ddmendpoints.agis.ALL.json
[2025-07-28 03:09:06] drwx------ 4 boinc boinc      4096 Jul 28 00:54 pilot3
[2025-07-28 03:09:06] -rw------- 1 boinc boinc 208897752 Jul 28 03:08 HITS.45743349._054238.pool.root.1
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc       530 Jul 28 03:08 boinc_task_state.xml
[2025-07-28 03:09:06] -rw------- 1 boinc boinc      1023 Jul 28 03:08 memory_monitor_summary.json
[2025-07-28 03:09:06] -rw------- 1 boinc boinc    271448 Jul 28 03:08 log.45743349._054238.job.log.tgz.1
[2025-07-28 03:09:06] -rw------- 1 boinc boinc      7741 Jul 28 03:08 heartbeat.json
[2025-07-28 03:09:06] -rw------- 1 boinc boinc        95 Jul 28 03:08 pilot_heartbeat.json
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc      8192 Jul 28 03:09 boinc_mmap_file
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc        27 Jul 28 03:09 wrapper_checkpoint.txt
[2025-07-28 03:09:06] -rw------- 1 boinc boinc       891 Jul 28 03:09 pilotlog.txt
[2025-07-28 03:09:06] -rw------- 1 boinc boinc    762946 Jul 28 03:09 log.45743349._054238.job.log.1
[2025-07-28 03:09:06] -rw------- 1 boinc boinc       357 Jul 28 03:09 output.list
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc       620 Jul 28 03:09 runtime_log
[2025-07-28 03:09:06] -rw------- 1 boinc boinc   1054720 Jul 28 03:09 result.tar.gz
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc      8628 Jul 28 03:09 runtime_log.err
[2025-07-28 03:09:06] -rw------- 1 boinc boinc       645 Jul 28 03:09 NVuNDmwvL07n9Rq4apOajLDm4fhM0noT9bVof3QYDmgy2KDmZP0Tnm.diag
[2025-07-28 03:09:06] -rw-r--r-- 1 boinc boinc     20718 Jul 28 03:09 stderr.txt
[2025-07-28 03:09:06] HITS file was successfully produced:
[2025-07-28 03:09:06] -rw------- 1 boinc boinc 208897752 Jul 28 03:08 shared/HITS.pool.root.1
[2025-07-28 03:09:06]  *** Contents of shared directory: ***
[2025-07-28 03:09:06] total 347352
[2025-07-28 03:09:06] -rw-r--r-- 2 boinc boinc 145162057 Jul 28 00:54 ATLAS.root_0
[2025-07-28 03:09:06] -rw-r--r-- 2 boinc boinc     15095 Jul 28 00:54 start_atlas.sh
[2025-07-28 03:09:06] -rw-r--r-- 2 boinc boinc    542892 Jul 28 00:54 input.tar.gz
[2025-07-28 03:09:06] -rw------- 1 boinc boinc 208897752 Jul 28 03:08 HITS.pool.root.1
[2025-07-28 03:09:06] -rw------- 1 boinc boinc   1054720 Jul 28 03:09 result.tar.gz
03:09:07 (143546): run_atlas exited; CPU time 31020.019664
03:09:07 (143546): called boinc_finish(0)

</stderr_txt>
]]>

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