Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:43:20 (22312): wrapper (7.7.26015): starting
22:43:20 (22312): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 22:43:20] Arguments: --nthreads 12
[2025-07-27 22:43:20] Threads: 12
[2025-07-27 22:43:20] Checking for CVMFS
[2025-07-27 22:43:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:43:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:43:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:43:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:43:21] 2.11.2.0 2913 112857 98676 148832 1 59 15484832 20275201 1 130560 0 39529374 99.972 9838914 10842 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:43:21] CVMFS is ok
[2025-07-27 22:43:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:43:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:43:21] Further information can be found at the LHC@home message board.
[2025-07-27 22:43:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:43:21] Checking for apptainer binary...
[2025-07-27 22:43:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:43:21] Running /usr/bin/apptainer --version
[2025-07-27 22:43:21] apptainer version 1.3.2-1.el7
[2025-07-27 22:43:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:43:22] c-205-6.aglt2.org
[2025-07-27 22:43:22] apptainer works
[2025-07-27 22:43:22] Set ATHENA_PROC_NUMBER=12
[2025-07-27 22:43:22] Set ATHENA_CORE_NUMBER=12
[2025-07-27 22:43:22] Starting ATLAS job with PandaID=6748282098
[2025-07-27 22:43:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:05:32]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:05:32]  protocol_id=None
[2025-07-28 00:05:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 00:05:32]  replicas=None
[2025-07-28 00:05:32]  scope=mc23_13p6TeV
[2025-07-28 00:05:32]  status=None
[2025-07-28 00:05:32]  status_code=0
[2025-07-28 00:05:32]  storage_token=
[2025-07-28 00:05:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748282098/log.45743349._055697.job.log.tgz.1
[2025-07-28 00:05:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/40/log.45743349._055697.job.log.tgz.1
[2025-07-28 00:05:32]  workdir=None
[2025-07-28 00:05:32] ]
[2025-07-28 00:05:32] 2025-07-28 04:04:53,490 | INFO     | transferring file log.45743349._055697.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748282098/log.45743349._055697.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 00:05:32] 2025-07-28 04:04:53,490 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748282098/log.45743349._055697.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._055697.job
[2025-07-28 00:05:32] 2025-07-28 04:04:53,514 | INFO     | adding to output.list: log.45743349._055697.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/40/log.45743349._055697.job.log.tg
[2025-07-28 00:05:32] 2025-07-28 04:04:53,515 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:05:32] 2025-07-28 04:04:53,515 | INFO     | summary of transferred files:
[2025-07-28 00:05:32] 2025-07-28 04:04:53,515 | INFO     |  -- lfn=log.45743349._055697.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:05:32] 2025-07-28 04:04:53,516 | INFO     | stage-out finished correctly
[2025-07-28 00:05:32] 2025-07-28 04:04:53,602 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:05:32] 2025-07-28 04:04:54,782 | INFO     | monitor loop #364: job 0:6748282098 is in state 'finished'
[2025-07-28 00:05:32] 2025-07-28 04:04:54,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:05:32] 2025-07-28 04:04:55,029 | INFO     | job 6748282098 has state=finished
[2025-07-28 00:05:32] 2025-07-28 04:04:55,029 | INFO     | preparing for final server update for job 6748282098 in state='finished'
[2025-07-28 00:05:32] 2025-07-28 04:04:55,030 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:05:32] 2025-07-28 04:04:55,030 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:05:32] 2025-07-28 04:04:55,030 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:05:32] 2025-07-28 04:04:55,030 | INFO     | job 6748282098 has finished - writing final server update
[2025-07-28 00:05:32] 2025-07-28 04:04:55,031 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:05:32] 2025-07-28 04:04:55,032 | INFO     | executing command: lscpu
[2025-07-28 00:05:32] 2025-07-28 04:04:55,058 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:05:32] 2025-07-28 04:04:56,438 | INFO     | PID=26491 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 00:05:32] 2025-07-28 04:04:57,285 | INFO     | monitor loop #365: job 0:6748282098 is in state 'finished'
[2025-07-28 00:05:32] 2025-07-28 04:04:57,285 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:05:32] 2025-07-28 04:04:59,788 | INFO     | monitor loop #366: job 0:6748282098 is in state 'finished'
[2025-07-28 00:05:32] 2025-07-28 04:04:59,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:05:32] 2025-07-28 04:04:59,979 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 00:05:32] 2025-07-28 04:04:59,983 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-07-28 00:05:32] 2025-07-28 04:04:59,985 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748282098/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:05:32] 2025-07-28 04:04:59,986 | INFO     | extracted standard info from prmon json
[2025-07-28 00:05:32] 2025-07-28 04:04:59,986 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:05:32] 2025-07-28 04:04:59,986 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:05:32] 2025-07-28 04:04:59,987 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:05:32] 2025-07-28 04:04:59,987 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:05:32] 2025-07-28 04:04:59,989 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:05:32] 2025-07-28 04:04:59,989 | INFO     | sum of square deviations: 120605052.0
[2025-07-28 00:05:32] 2025-07-28 04:04:59,990 | INFO     | sum of deviations: -7899313889.000001
[2025-07-28 00:05:32] 2025-07-28 04:04:59,990 | INFO     | mean x: 1753673147.0
[2025-07-28 00:05:32] 2025-07-28 04:04:59,990 | INFO     | mean y: 2781095.095890411
[2025-07-28 00:05:32] 2025-07-28 04:04:59,990 | INFO     | -- intersect: 114863762597.45818
[2025-07-28 00:05:32] 2025-07-28 04:04:59,990 | INFO     | intersect: 114863762597.45818
[2025-07-28 00:05:32] 2025-07-28 04:04:59,990 | INFO     | chi2: 0.08511665333934597
[2025-07-28 00:05:32] 2025-07-28 04:04:59,990 | INFO     | -- intersect: 114863762597.45818
[2025-07-28 00:05:32] 2025-07-28 04:04:59,991 | INFO     | current memory leak: -65.50 B/s (using 73 data points, chi2=0.09)
[2025-07-28 00:05:32] 2025-07-28 04:04:59,991 | INFO     | could have reported an average CPU frequency of 2056 MHz (6 samples)
[2025-07-28 00:05:32] 2025-07-28 04:04:59,991 | INFO     | ..............................
[2025-07-28 00:05:32] 2025-07-28 04:04:59,991 | INFO     | . Timing measurements:
[2025-07-28 00:05:32] 2025-07-28 04:04:59,991 | INFO     | . get job = 0 s
[2025-07-28 00:05:32] 2025-07-28 04:04:59,991 | INFO     | . initial setup = 2 s
[2025-07-28 00:05:32] 2025-07-28 04:04:59,991 | INFO     | . payload setup = 9 s
[2025-07-28 00:05:32] 2025-07-28 04:04:59,992 | INFO     | . stage-in = 0 s
[2025-07-28 00:05:32] 2025-07-28 04:04:59,992 | INFO     | . payload execution = 4848 s
[2025-07-28 00:05:32] 2025-07-28 04:04:59,992 | INFO     | . stage-out = 0 s
[2025-07-28 00:05:32] 2025-07-28 04:04:59,992 | INFO     | . log creation = 0 s
[2025-07-28 00:05:32] 2025-07-28 04:04:59,992 | INFO     | ..............................
[2025-07-28 00:05:32] 2025-07-28 04:05:00,077 | INFO     | 
[2025-07-28 00:05:32] 2025-07-28 04:05:00,077 | INFO     | job summary report
[2025-07-28 00:05:32] 2025-07-28 04:05:00,077 | INFO     | --------------------------------------------------
[2025-07-28 00:05:32] 2025-07-28 04:05:00,077 | INFO     | PanDA job id: 6748282098
[2025-07-28 00:05:32] 2025-07-28 04:05:00,077 | INFO     | task id: 45743349
[2025-07-28 00:05:32] 2025-07-28 04:05:00,078 | INFO     | errors: (none)
[2025-07-28 00:05:32] 2025-07-28 04:05:00,078 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:05:32] 2025-07-28 04:05:00,078 | INFO     | pilot state: finished 
[2025-07-28 00:05:32] 2025-07-28 04:05:00,078 | INFO     | transexitcode: 0
[2025-07-28 00:05:32] 2025-07-28 04:05:00,078 | INFO     | exeerrorcode: 0
[2025-07-28 00:05:32] 2025-07-28 04:05:00,078 | INFO     | exeerrordiag: 
[2025-07-28 00:05:32] 2025-07-28 04:05:00,079 | INFO     | exitcode: 0
[2025-07-28 00:05:32] 2025-07-28 04:05:00,079 | INFO     | exitmsg: OK
[2025-07-28 00:05:32] 2025-07-28 04:05:00,079 | INFO     | cpuconsumptiontime: 52955 s
[2025-07-28 00:05:32] 2025-07-28 04:05:00,079 | INFO     | nevents: 400
[2025-07-28 00:05:32] 2025-07-28 04:05:00,079 | INFO     | neventsw: 0
[2025-07-28 00:05:32] 2025-07-28 04:05:00,079 | INFO     | pid: 442
[2025-07-28 00:05:32] 2025-07-28 04:05:00,080 | INFO     | pgrp: 442
[2025-07-28 00:05:32] 2025-07-28 04:05:00,080 | INFO     | corecount: 12
[2025-07-28 00:05:32] 2025-07-28 04:05:00,080 | INFO     | event service: False
[2025-07-28 00:05:32] 2025-07-28 04:05:00,080 | INFO     | sizes: {0: 2397425, 5: 2397687, 11: 2397743, 4862: 2423962, 4863: 2433016, 4869: 2433154}
[2025-07-28 00:05:32] 2025-07-28 04:05:00,080 | INFO     | --------------------------------------------------
[2025-07-28 00:05:32] 2025-07-28 04:05:00,080 | INFO     | 
[2025-07-28 00:05:32] 2025-07-28 04:05:00,081 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 00:05:32] 2025-07-28 04:05:00,107 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,107 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,107 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,107 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,108 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,108 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,108 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,108 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,108 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,109 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,109 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,109 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,109 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,109 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,109 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,109 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,109 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,109 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:05:32] 2025-07-28 04:05:00,110 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,110 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:05:32] 2025-07-28 04:05:00,110 | INFO     | job 6748282098 has completed (purged errors)
[2025-07-28 00:05:32] 2025-07-28 04:05:00,110 | INFO     | overall cleanup function is called
[2025-07-28 00:05:32] 2025-07-28 04:05:01,117 | INFO     | --- collectZombieJob: --- 10, [442]
[2025-07-28 00:05:32] 2025-07-28 04:05:01,117 | INFO     | zombie collector waiting for pid 442
[2025-07-28 00:05:32] 2025-07-28 04:05:01,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:05:32] 2025-07-28 04:05:01,117 | INFO     | collected zombie processes
[2025-07-28 00:05:32] 2025-07-28 04:05:01,117 | INFO     | will attempt to kill all subprocesses of pid=442
[2025-07-28 00:05:32] 2025-07-28 04:05:01,206 | INFO     | process IDs to be killed: [442] (in reverse order)
[2025-07-28 00:05:32] 2025-07-28 04:05:01,262 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:05:32] 2025-07-28 04:05:01,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:05:32] 2025-07-28 04:05:01,266 | INFO     | did not find any defunct processes belonging to 442
[2025-07-28 00:05:32] 2025-07-28 04:05:01,269 | INFO     | did not find any defunct processes belonging to 442
[2025-07-28 00:05:32] 2025-07-28 04:05:01,269 | INFO     | ready for new job
[2025-07-28 00:05:32] 2025-07-28 04:05:01,269 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:05:32] 2025-07-28 04:05:01,270 | INFO     | ***************************************
[2025-07-28 00:05:32] 2025-07-28 04:05:01,271 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:05:32] 2025-07-28 04:05:01,271 | INFO     | ***************************************
[2025-07-28 00:05:32] 2025-07-28 04:05:01,271 | INFO     | 
[2025-07-28 00:05:32] 2025-07-28 04:05:01,271 | INFO     | architecture information:
[2025-07-28 00:05:32] 2025-07-28 04:05:01,272 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:05:32] 2025-07-28 04:05:01,285 | INFO     | cat /etc/os-release:
[2025-07-28 00:05:32] NAME="CentOS Linux"
[2025-07-28 00:05:32] VERSION="7 (Core)"
[2025-07-28 00:05:32] ID="centos"
[2025-07-28 00:05:32] ID_LIKE="rhel fedora"
[2025-07-28 00:05:32] VERSION_ID="7"
[2025-07-28 00:05:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:05:32] ANSI_COLOR="0;31"
[2025-07-28 00:05:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:05:32] HOME_URL="https://www.centos.org/"
[2025-07-28 00:05:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:05:32] 
[2025-07-28 00:05:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:05:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:05:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:05:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:05:32] 
[2025-07-28 00:05:32] 2025-07-28 04:05:01,286 | INFO     | ***************************************
[2025-07-28 00:05:32] 2025-07-28 04:05:01,788 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 00:05:32] 2025-07-28 04:05:01,805 | INFO     | sufficient remaining disk space (29347545088 B)
[2025-07-28 00:05:32] 2025-07-28 04:05:01,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:05:32] 2025-07-28 04:05:01,806 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:05:32] 2025-07-28 04:05:01,806 | INFO     | update_server=False
[2025-07-28 00:05:32] 2025-07-28 04:05:01,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:05:32] 2025-07-28 04:05:01,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:05:32] 2025-07-28 04:05:01,807 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:05:32] 2025-07-28 04:05:01,908 | INFO     | all payload control threads have been joined
[2025-07-28 00:05:32] 2025-07-28 04:05:02,294 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 00:05:32] 2025-07-28 04:05:02,295 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 00:05:32] 2025-07-28 04:05:02,295 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:05:32] 2025-07-28 04:05:02,295 | INFO     | will abort loop
[2025-07-28 00:05:32] 2025-07-28 04:05:02,369 | INFO     | all data control threads have been joined
[2025-07-28 00:05:32] 2025-07-28 04:05:02,812 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:02,812 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:02,913 | INFO     | [payload] control thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:02,937 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:03,294 | INFO     | all job control threads have been joined
[2025-07-28 00:05:32] 2025-07-28 04:05:03,297 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:03,337 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:03,375 | INFO     | [data] control thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:03,622 | INFO     | [job] validate thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:03,812 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:03,974 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:04,153 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:04,161 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:04,192 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:05:32] 2025-07-28 04:05:04,258 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:04,297 | INFO     | [job] control thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:08,198 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:12,532 | INFO     | job.realtimelogging is not enabled
[2025-07-28 00:05:32] 2025-07-28 04:05:13,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:05:32] 2025-07-28 04:05:13,842 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139725663639360)>', '<ExcThread(monitor, started 139724974958336)>']
[2025-07-28 00:05:32] 2025-07-28 04:05:18,852 | INFO     | all workflow threads have been joined
[2025-07-28 00:05:32] 2025-07-28 04:05:18,852 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:05:32] 2025-07-28 04:05:18,858 | INFO     | traces error code: 0
[2025-07-28 00:05:32] 2025-07-28 04:05:18,859 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:05:32] 2025-07-28 04:05:32,639 | INFO     | PID=26491 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 00:05:32] 2025-07-28 04:05:32,640 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:05:32] 2025-07-28 04:05:32,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:05:32] 2025-07-28 04:05:32,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:05:32] 2025-07-28 04:05:32,640 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:05:32] 2025-07-28 04:05:32,640 | INFO     | [monitor] control thread has ended
[2025-07-28 00:05:32] 2025-07-28 04:05:32,731 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:05:32] 2025-07-28 04:05:32,735 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:05:32] 2025-07-28 04:05:32,738 [wrapper] pilotpid: 26491
[2025-07-28 00:05:32] 2025-07-28 04:05:32,742 [wrapper] Pilot exit status: 0
[2025-07-28 00:05:32] 2025-07-28 04:05:32,758 [wrapper] pandaids: 6748282098
[2025-07-28 00:05:32] 2025-07-28 04:05:32,799 [wrapper] cleanup supervisor_pilot 11194 26492
[2025-07-28 00:05:32] 2025-07-28 04:05:32,803 [wrapper] Test setup, not cleaning
[2025-07-28 00:05:32] 2025-07-28 04:05:32,807 [wrapper] apfmon messages muted
[2025-07-28 00:05:32] 2025-07-28 04:05:32,810 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:05:32] 2025-07-28 04:05:32,814 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:05:32]  *** Error codes and diagnostics ***
[2025-07-28 00:05:32]     "exeErrorCode": 0,
[2025-07-28 00:05:32]     "exeErrorDiag": "",
[2025-07-28 00:05:32]     "pilotErrorCode": 0,
[2025-07-28 00:05:32]     "pilotErrorDiag": "",
[2025-07-28 00:05:32]  *** Listing of results directory ***
[2025-07-28 00:05:32] total 434688
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 16:58 pilot3.tar.gz
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 17:15 queuedata.json
[2025-07-28 00:05:32] -rwx------ 1 boincer umatlas     36292 Jul 27 17:17 runpilot2-wrapper.sh
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas       100 Jul 27 22:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:05:32] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 22:43 run_atlas
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas       105 Jul 27 22:43 job.xml
[2025-07-28 00:05:32] -rw-r--r-- 2 boincer umatlas 230757125 Jul 27 22:43 EVNT.45743347._002696.pool.root.1
[2025-07-28 00:05:32] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 22:43 start_atlas.sh
[2025-07-28 00:05:32] drwxrwx--x 2 boincer umatlas      4096 Jul 27 22:43 shared
[2025-07-28 00:05:32] -rw-r--r-- 2 boincer umatlas    542900 Jul 27 22:43 input.tar.gz
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas         0 Jul 27 22:43 boinc_lockfile
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 22:43 pandaJob.out
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas    980125 Jul 27 22:43 agis_schedconf.cvmfs.json
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas   1593052 Jul 27 22:43 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:05:32] drwx------ 4 boincer umatlas      4096 Jul 27 22:43 pilot3
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas      5867 Jul 28 00:03 init_data.xml
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas 208812402 Jul 28 00:04 HITS.45743349._055697.pool.root.1
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas       529 Jul 28 00:04 boinc_task_state.xml
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas        95 Jul 28 00:04 pilot_heartbeat.json
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas      1044 Jul 28 00:04 memory_monitor_summary.json
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas    372227 Jul 28 00:04 log.45743349._055697.job.log.tgz.1
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas      7847 Jul 28 00:04 heartbeat.json
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 00:05 boinc_mmap_file
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas        27 Jul 28 00:05 wrapper_checkpoint.txt
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas       745 Jul 28 00:05 pilotlog.txt
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas    464222 Jul 28 00:05 log.45743349._055697.job.log.1
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas       357 Jul 28 00:05 output.list
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas       620 Jul 28 00:05 runtime_log
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas    860160 Jul 28 00:05 result.tar.gz
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas       658 Jul 28 00:05 zH2KDmIvN07n9Rq4apOajLDm4fhM0noT9bVof3QYDmk82KDmHUJmrm.diag
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas      8657 Jul 28 00:05 runtime_log.err
[2025-07-28 00:05:32] -rw-r--r-- 1 boincer umatlas     21858 Jul 28 00:05 stderr.txt
[2025-07-28 00:05:32] HITS file was successfully produced:
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas 208812402 Jul 28 00:04 shared/HITS.pool.root.1
[2025-07-28 00:05:32]  *** Contents of shared directory: ***
[2025-07-28 00:05:32] total 430664
[2025-07-28 00:05:32] -rw-r--r-- 2 boincer umatlas 230757125 Jul 27 22:43 ATLAS.root_0
[2025-07-28 00:05:32] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 22:43 start_atlas.sh
[2025-07-28 00:05:32] -rw-r--r-- 2 boincer umatlas    542900 Jul 27 22:43 input.tar.gz
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas 208812402 Jul 28 00:04 HITS.pool.root.1
[2025-07-28 00:05:32] -rw------- 1 boincer umatlas    860160 Jul 28 00:05 result.tar.gz
00:05:34 (22312): run_atlas exited; CPU time 52940.382284
00:05:34 (22312): called boinc_finish(0)

</stderr_txt>
]]>

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