Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:48:21 (2277222): wrapper (7.7.26015): starting
23:48:21 (2277222): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 23:48:21] Arguments: --nthreads 12
[2025-07-27 23:48:21] Threads: 12
[2025-07-27 23:48:21] Checking for CVMFS
[2025-07-27 23:48:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:48:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:48:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:48:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:48:21] 2.13.0.0 1190652 19285 342432 148834 1 250 29643591 32935936 5869 16776704 0 34793389 99.713 60824025 29026 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 23:48:21] CVMFS is ok
[2025-07-27 23:48:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:48:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:48:21] Further information can be found at the LHC@home message board.
[2025-07-27 23:48:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:48:21] Checking for apptainer binary...
[2025-07-27 23:48:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:48:21] Running /usr/bin/apptainer --version
[2025-07-27 23:48:21] apptainer version 1.4.1-1.el9
[2025-07-27 23:48:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:48:21] c6-1-26-3.aglt2.org
[2025-07-27 23:48:21] apptainer works
[2025-07-27 23:48:21] Set ATHENA_PROC_NUMBER=12
[2025-07-27 23:48:21] Set ATHENA_CORE_NUMBER=12
[2025-07-27 23:48:21] Starting ATLAS job with PandaID=6748246527
[2025-07-27 23:48:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:08:04]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:08:04]  is_tar=False
[2025-07-28 01:08:04]  lfn=log.45743349._055670.job.log.tgz.1
[2025-07-28 01:08:04]  mtime=0
[2025-07-28 01:08:04]  protocol_id=None
[2025-07-28 01:08:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 01:08:04]  replicas=None
[2025-07-28 01:08:04]  scope=mc23_13p6TeV
[2025-07-28 01:08:04]  status=None
[2025-07-28 01:08:04]  status_code=0
[2025-07-28 01:08:04]  storage_token=
[2025-07-28 01:08:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748246527/log.45743349._055670.job.log.tgz.1
[2025-07-28 01:08:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/78/log.45743349._055670.job.log.tgz.1
[2025-07-28 01:08:04]  workdir=None
[2025-07-28 01:08:04] ]
[2025-07-28 01:08:04] 2025-07-28 05:07:23,902 | INFO     | transferring file log.45743349._055670.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748246527/log.45743349._055670.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 01:08:04] 2025-07-28 05:07:23,903 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748246527/log.45743349._055670.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._055670.job
[2025-07-28 01:08:04] 2025-07-28 05:07:23,925 | INFO     | adding to output.list: log.45743349._055670.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/78/log.45743349._055670.job.log.tg
[2025-07-28 01:08:04] 2025-07-28 05:07:23,926 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 01:08:04] 2025-07-28 05:07:23,926 | INFO     | summary of transferred files:
[2025-07-28 01:08:04] 2025-07-28 05:07:23,927 | INFO     |  -- lfn=log.45743349._055670.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 01:08:04] 2025-07-28 05:07:23,927 | INFO     | stage-out finished correctly
[2025-07-28 01:08:04] 2025-07-28 05:07:24,306 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 01:08:04] 2025-07-28 05:07:24,431 | INFO     | job 6748246527 has state=finished
[2025-07-28 01:08:04] 2025-07-28 05:07:24,432 | INFO     | preparing for final server update for job 6748246527 in state='finished'
[2025-07-28 01:08:04] 2025-07-28 05:07:24,433 | INFO     | this job has now completed (state=finished)
[2025-07-28 01:08:04] 2025-07-28 05:07:24,433 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 01:08:04] 2025-07-28 05:07:24,434 | INFO     | log transfer has been attempted: DONE
[2025-07-28 01:08:04] 2025-07-28 05:07:24,434 | INFO     | job 6748246527 has finished - writing final server update
[2025-07-28 01:08:04] 2025-07-28 05:07:24,434 | INFO     | total number of processed events: 400 (read)
[2025-07-28 01:08:04] 2025-07-28 05:07:24,436 | INFO     | executing command: lscpu
[2025-07-28 01:08:04] 2025-07-28 05:07:24,498 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 01:08:04] 2025-07-28 05:07:28,607 | WARNING  | process 2292366 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 01:08:04] 2025-07-28 05:07:28,607 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748246527/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:08:04] 2025-07-28 05:07:28,914 | INFO     | number of running child processes to parent process 2292366: 1
[2025-07-28 01:08:04] 2025-07-28 05:07:28,915 | INFO     | maximum number of monitored processes: 6
[2025-07-28 01:08:04] 2025-07-28 05:07:30,466 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 01:08:04] 2025-07-28 05:07:30,483 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2511.5424464285716
[2025-07-28 01:08:04] 2025-07-28 05:07:30,508 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748246527/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:08:04] 2025-07-28 05:07:30,509 | INFO     | extracted standard info from prmon json
[2025-07-28 01:08:04] 2025-07-28 05:07:30,509 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:08:04] 2025-07-28 05:07:30,509 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:08:04] 2025-07-28 05:07:30,510 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:08:04] 2025-07-28 05:07:30,510 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:08:04] 2025-07-28 05:07:30,512 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:08:04] 2025-07-28 05:07:30,513 | INFO     | sum of square deviations: 110960220.0
[2025-07-28 01:08:04] 2025-07-28 05:07:30,514 | INFO     | sum of deviations: -9181309409.0
[2025-07-28 01:08:04] 2025-07-28 05:07:30,514 | INFO     | mean x: 1753676981.0
[2025-07-28 01:08:04] 2025-07-28 05:07:30,514 | INFO     | mean y: 2462850.408450704
[2025-07-28 01:08:04] 2025-07-28 05:07:30,514 | INFO     | -- intersect: 145108979095.6179
[2025-07-28 01:08:04] 2025-07-28 05:07:30,514 | INFO     | intersect: 145108979095.6179
[2025-07-28 01:08:04] 2025-07-28 05:07:30,514 | INFO     | chi2: 0.1544355796971652
[2025-07-28 01:08:04] 2025-07-28 05:07:30,514 | INFO     | -- intersect: 145108979095.6179
[2025-07-28 01:08:04] 2025-07-28 05:07:30,514 | INFO     | current memory leak: -82.74 B/s (using 71 data points, chi2=0.15)
[2025-07-28 01:08:04] 2025-07-28 05:07:30,515 | INFO     | could have reported an average CPU frequency of 2587 MHz (6 samples)
[2025-07-28 01:08:04] 2025-07-28 05:07:30,515 | INFO     | ..............................
[2025-07-28 01:08:04] 2025-07-28 05:07:30,515 | INFO     | . Timing measurements:
[2025-07-28 01:08:04] 2025-07-28 05:07:30,515 | INFO     | . get job = 0 s
[2025-07-28 01:08:04] 2025-07-28 05:07:30,515 | INFO     | . initial setup = 2 s
[2025-07-28 01:08:04] 2025-07-28 05:07:30,515 | INFO     | . payload setup = 7 s
[2025-07-28 01:08:04] 2025-07-28 05:07:30,516 | INFO     | . stage-in = 0 s
[2025-07-28 01:08:04] 2025-07-28 05:07:30,516 | INFO     | . payload execution = 4703 s
[2025-07-28 01:08:04] 2025-07-28 05:07:30,516 | INFO     | . stage-out = 0 s
[2025-07-28 01:08:04] 2025-07-28 05:07:30,516 | INFO     | . log creation = 0 s
[2025-07-28 01:08:04] 2025-07-28 05:07:30,516 | INFO     | ..............................
[2025-07-28 01:08:04] 2025-07-28 05:07:30,649 | INFO     | 
[2025-07-28 01:08:04] 2025-07-28 05:07:30,649 | INFO     | job summary report
[2025-07-28 01:08:04] 2025-07-28 05:07:30,649 | INFO     | --------------------------------------------------
[2025-07-28 01:08:04] 2025-07-28 05:07:30,649 | INFO     | PanDA job id: 6748246527
[2025-07-28 01:08:04] 2025-07-28 05:07:30,649 | INFO     | task id: 45743349
[2025-07-28 01:08:04] 2025-07-28 05:07:30,649 | INFO     | errors: (none)
[2025-07-28 01:08:04] 2025-07-28 05:07:30,649 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:08:04] 2025-07-28 05:07:30,650 | INFO     | pilot state: finished 
[2025-07-28 01:08:04] 2025-07-28 05:07:30,650 | INFO     | transexitcode: 0
[2025-07-28 01:08:04] 2025-07-28 05:07:30,650 | INFO     | exeerrorcode: 0
[2025-07-28 01:08:04] 2025-07-28 05:07:30,651 | INFO     | exeerrordiag: 
[2025-07-28 01:08:04] 2025-07-28 05:07:30,651 | INFO     | exitcode: 0
[2025-07-28 01:08:04] 2025-07-28 05:07:30,651 | INFO     | exitmsg: OK
[2025-07-28 01:08:04] 2025-07-28 05:07:30,651 | INFO     | cpuconsumptiontime: 48678 s
[2025-07-28 01:08:04] 2025-07-28 05:07:30,651 | INFO     | nevents: 400
[2025-07-28 01:08:04] 2025-07-28 05:07:30,651 | INFO     | neventsw: 0
[2025-07-28 01:08:04] 2025-07-28 05:07:30,651 | INFO     | pid: 2292366
[2025-07-28 01:08:04] 2025-07-28 05:07:30,652 | INFO     | pgrp: 2292366
[2025-07-28 01:08:04] 2025-07-28 05:07:30,652 | INFO     | corecount: 12
[2025-07-28 01:08:04] 2025-07-28 05:07:30,652 | INFO     | event service: False
[2025-07-28 01:08:04] 2025-07-28 05:07:30,652 | INFO     | sizes: {0: 2397246, 1: 2397501, 5: 2397763, 12: 2397819, 4713: 2423926, 4714: 2423925, 4715: 2433107, 4716: 2433163, 4722: 2433357}
[2025-07-28 01:08:04] 2025-07-28 05:07:30,652 | INFO     | --------------------------------------------------
[2025-07-28 01:08:04] 2025-07-28 05:07:30,652 | INFO     | 
[2025-07-28 01:08:04] 2025-07-28 05:07:30,652 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 01:08:04] 2025-07-28 05:07:30,682 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,682 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,682 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,683 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,683 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,683 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,683 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,685 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:08:04] 2025-07-28 05:07:30,685 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,685 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:08:04] 2025-07-28 05:07:30,685 | INFO     | job 6748246527 has completed (purged errors)
[2025-07-28 01:08:04] 2025-07-28 05:07:30,685 | INFO     | overall cleanup function is called
[2025-07-28 01:08:04] 2025-07-28 05:07:31,258 | INFO     | PID=2283628 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 01:08:04] 2025-07-28 05:07:31,258 | INFO     | .. there are 8 such processes running
[2025-07-28 01:08:04] 2025-07-28 05:07:31,695 | INFO     | --- collectZombieJob: --- 10, [2292366]
[2025-07-28 01:08:04] 2025-07-28 05:07:31,695 | INFO     | zombie collector waiting for pid 2292366
[2025-07-28 01:08:04] 2025-07-28 05:07:31,696 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:08:04] 2025-07-28 05:07:31,696 | INFO     | collected zombie processes
[2025-07-28 01:08:04] 2025-07-28 05:07:31,696 | INFO     | will attempt to kill all subprocesses of pid=2292366
[2025-07-28 01:08:04] 2025-07-28 05:07:32,078 | INFO     | process IDs to be killed: [2292366] (in reverse order)
[2025-07-28 01:08:04] 2025-07-28 05:07:32,192 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:08:04] 2025-07-28 05:07:32,193 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:08:04] 2025-07-28 05:07:32,206 | INFO     | did not find any defunct processes belonging to 2292366
[2025-07-28 01:08:04] 2025-07-28 05:07:32,218 | INFO     | did not find any defunct processes belonging to 2292366
[2025-07-28 01:08:04] 2025-07-28 05:07:32,219 | INFO     | ready for new job
[2025-07-28 01:08:04] 2025-07-28 05:07:32,219 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:08:04] 2025-07-28 05:07:32,221 | INFO     | ***************************************
[2025-07-28 01:08:04] 2025-07-28 05:07:32,222 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:08:04] 2025-07-28 05:07:32,222 | INFO     | ***************************************
[2025-07-28 01:08:04] 2025-07-28 05:07:32,222 | INFO     | 
[2025-07-28 01:08:04] 2025-07-28 05:07:32,237 | INFO     | architecture information:
[2025-07-28 01:08:04] 2025-07-28 05:07:32,238 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:08:04] 2025-07-28 05:07:32,262 | INFO     | cat /etc/os-release:
[2025-07-28 01:08:04] NAME="CentOS Linux"
[2025-07-28 01:08:04] VERSION="7 (Core)"
[2025-07-28 01:08:04] ID="centos"
[2025-07-28 01:08:04] ID_LIKE="rhel fedora"
[2025-07-28 01:08:04] VERSION_ID="7"
[2025-07-28 01:08:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:08:04] ANSI_COLOR="0;31"
[2025-07-28 01:08:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:08:04] HOME_URL="https://www.centos.org/"
[2025-07-28 01:08:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:08:04] 
[2025-07-28 01:08:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:08:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:08:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:08:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:08:04] 
[2025-07-28 01:08:04] 2025-07-28 05:07:32,262 | INFO     | ***************************************
[2025-07-28 01:08:04] 2025-07-28 05:07:32,765 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 01:08:04] 2025-07-28 05:07:32,788 | INFO     | sufficient remaining disk space (76278661120 B)
[2025-07-28 01:08:04] 2025-07-28 05:07:32,789 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:08:04] 2025-07-28 05:07:32,789 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:08:04] 2025-07-28 05:07:32,789 | INFO     | update_server=False
[2025-07-28 01:08:04] 2025-07-28 05:07:32,789 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:08:04] 2025-07-28 05:07:32,789 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:08:04] 2025-07-28 05:07:32,790 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:08:04] 2025-07-28 05:07:32,790 | INFO     | aborting loop
[2025-07-28 01:08:04] 2025-07-28 05:07:32,889 | INFO     | all payload control threads have been joined
[2025-07-28 01:08:04] 2025-07-28 05:07:33,170 | INFO     | all job control threads have been joined
[2025-07-28 01:08:04] 2025-07-28 05:07:33,566 | INFO     | all data control threads have been joined
[2025-07-28 01:08:04] 2025-07-28 05:07:33,795 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:33,797 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:33,824 | INFO     | [job] validate thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:33,894 | INFO     | [payload] control thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:33,906 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:34,148 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:34,176 | INFO     | [job] control thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:34,253 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:34,335 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:34,448 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:34,536 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:34,571 | INFO     | [data] control thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:34,796 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:34,896 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:34,942 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:08:04] 2025-07-28 05:07:35,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:08:04] 2025-07-28 05:07:36,666 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:38,950 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:08:04] 2025-07-28 05:07:39,224 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799664346944)>', '<ExcThread(monitor, started 139798895388416)>']
[2025-07-28 01:08:04] 2025-07-28 05:07:44,249 | INFO     | all workflow threads have been joined
[2025-07-28 01:08:04] 2025-07-28 05:07:44,250 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:08:04] 2025-07-28 05:07:44,250 | INFO     | traces error code: 0
[2025-07-28 01:08:04] 2025-07-28 05:07:44,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:08:04] 2025-07-28 05:08:03,662 | INFO     | PID=2283628 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:08:04] 2025-07-28 05:08:03,662 | INFO     | .. there are 8 such processes running
[2025-07-28 01:08:04] 2025-07-28 05:08:03,662 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:08:04] 2025-07-28 05:08:03,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:08:04] 2025-07-28 05:08:03,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:08:04] 2025-07-28 05:08:03,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:08:04] 2025-07-28 05:08:03,663 | INFO     | [monitor] control thread has ended
[2025-07-28 01:08:04] 2025-07-28 05:08:03,885 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:08:04] 2025-07-28 05:08:03,889 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:08:04] 2025-07-28 05:08:03,894 [wrapper] pilotpid: 2283628
[2025-07-28 01:08:04] 2025-07-28 05:08:03,899 [wrapper] Pilot exit status: 0
[2025-07-28 01:08:04] 2025-07-28 05:08:03,915 [wrapper] pandaids: 6748246527
[2025-07-28 01:08:04] 2025-07-28 05:08:03,994 [wrapper] cleanup supervisor_pilot 2655084 2283629
[2025-07-28 01:08:04] 2025-07-28 05:08:03,998 [wrapper] Test setup, not cleaning
[2025-07-28 01:08:04] 2025-07-28 05:08:04,002 [wrapper] apfmon messages muted
[2025-07-28 01:08:04] 2025-07-28 05:08:04,006 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:08:04] 2025-07-28 05:08:04,011 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:08:04]  *** Error codes and diagnostics ***
[2025-07-28 01:08:04]     "exeErrorCode": 0,
[2025-07-28 01:08:04]     "exeErrorDiag": "",
[2025-07-28 01:08:04]     "pilotErrorCode": 0,
[2025-07-28 01:08:04]     "pilotErrorDiag": "",
[2025-07-28 01:08:04]  *** Listing of results directory ***
[2025-07-28 01:08:04] total 428524
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:58 pilot3.tar.gz
[2025-07-28 01:08:04] -rwx------. 1 boincer umatlas     36292 Jul 27 17:15 runpilot2-wrapper.sh
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 17:15 queuedata.json
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:08:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:48 run_atlas
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:48 job.xml
[2025-07-28 01:08:04] -rw-r--r--. 2 boincer umatlas 229343631 Jul 27 23:48 EVNT.45743347._000607.pool.root.1
[2025-07-28 01:08:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:48 shared
[2025-07-28 01:08:04] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 23:48 input.tar.gz
[2025-07-28 01:08:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:48 start_atlas.sh
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:48 boinc_lockfile
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 23:48 pandaJob.out
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas    980117 Jul 27 23:48 agis_schedconf.cvmfs.json
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:48 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:08:04] drwx------. 4 boincer umatlas      4096 Jul 27 23:48 pilot3
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas      6842 Jul 28 01:03 init_data.xml
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas 203931547 Jul 28 01:06 HITS.45743349._055670.pool.root.1
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas       529 Jul 28 01:06 boinc_task_state.xml
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas        95 Jul 28 01:07 pilot_heartbeat.json
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas      1036 Jul 28 01:07 memory_monitor_summary.json
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas    364359 Jul 28 01:07 log.45743349._055670.job.log.tgz.1
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas      7824 Jul 28 01:07 heartbeat.json
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas        27 Jul 28 01:07 wrapper_checkpoint.txt
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 01:07 boinc_mmap_file
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas       822 Jul 28 01:08 pilotlog.txt
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas    465315 Jul 28 01:08 log.45743349._055670.job.log.1
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas       357 Jul 28 01:08 output.list
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas       620 Jul 28 01:08 runtime_log
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas    849920 Jul 28 01:08 result.tar.gz
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 01:08 runtime_log.err
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas       655 Jul 28 01:08 K1WNDmAtN07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfUWLDmWaq0pm.diag
[2025-07-28 01:08:04] -rw-r--r--. 1 boincer umatlas     21696 Jul 28 01:08 stderr.txt
[2025-07-28 01:08:04] HITS file was successfully produced:
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas 203931547 Jul 28 01:06 shared/HITS.pool.root.1
[2025-07-28 01:08:04]  *** Contents of shared directory: ***
[2025-07-28 01:08:04] total 424508
[2025-07-28 01:08:04] -rw-r--r--. 2 boincer umatlas 229343631 Jul 27 23:48 ATLAS.root_0
[2025-07-28 01:08:04] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 23:48 input.tar.gz
[2025-07-28 01:08:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:48 start_atlas.sh
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas 203931547 Jul 28 01:06 HITS.pool.root.1
[2025-07-28 01:08:04] -rw-------. 1 boincer umatlas    849920 Jul 28 01:08 result.tar.gz
01:08:05 (2277222): run_atlas exited; CPU time 48714.279780
01:08:05 (2277222): called boinc_finish(0)

</stderr_txt>
]]>

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