Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:23 (852777): wrapper (7.7.26015): starting
00:02:23 (852777): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 00:02:23] Arguments: --nthreads 12
[2025-07-28 00:02:23] Threads: 12
[2025-07-28 00:02:23] Checking for CVMFS
[2025-07-28 00:02:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 00:02:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 00:02:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 00:02:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 00:02:23] 2.12.6.0 2624825 19298 338168 148834 3 390 37479848 40960000 8118 16776704 0 59030066 99.779 53830551 31158 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 00:02:23] CVMFS is ok
[2025-07-28 00:02:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 00:02:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 00:02:23] Further information can be found at the LHC@home message board.
[2025-07-28 00:02:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 00:02:23] Checking for apptainer binary...
[2025-07-28 00:02:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 00:02:23] Running /usr/bin/apptainer --version
[2025-07-28 00:02:23] apptainer version 1.4.1-1.el9
[2025-07-28 00:02:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 00:02:24] c6-8-12-1.aglt2.org
[2025-07-28 00:02:24] apptainer works
[2025-07-28 00:02:24] Set ATHENA_PROC_NUMBER=12
[2025-07-28 00:02:24] Set ATHENA_CORE_NUMBER=12
[2025-07-28 00:02:24] Starting ATLAS job with PandaID=6748252520
[2025-07-28 00:02:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:23:46]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:23:46]  lfn=log.45758910._000127.job.log.tgz.1
[2025-07-28 01:23:46]  mtime=0
[2025-07-28 01:23:46]  protocol_id=None
[2025-07-28 01:23:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 01:23:46]  replicas=None
[2025-07-28 01:23:46]  scope=mc23_13p6TeV
[2025-07-28 01:23:46]  status=None
[2025-07-28 01:23:46]  status_code=0
[2025-07-28 01:23:46]  storage_token=
[2025-07-28 01:23:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748252520/log.45758910._000127.job.log.tgz.1
[2025-07-28 01:23:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/2d/log.45758910._000127.job.log.tgz.1
[2025-07-28 01:23:46]  workdir=None
[2025-07-28 01:23:46] ]
[2025-07-28 01:23:46] 2025-07-28 05:23:06,733 | INFO     | transferring file log.45758910._000127.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748252520/log.45758910._000127.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 01:23:46] 2025-07-28 05:23:06,733 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748252520/log.45758910._000127.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758910._000127.job
[2025-07-28 01:23:46] 2025-07-28 05:23:06,752 | INFO     | adding to output.list: log.45758910._000127.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/2d/log.45758910._000127.job.log.tg
[2025-07-28 01:23:46] 2025-07-28 05:23:06,753 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 01:23:46] 2025-07-28 05:23:06,753 | INFO     | summary of transferred files:
[2025-07-28 01:23:46] 2025-07-28 05:23:06,753 | INFO     |  -- lfn=log.45758910._000127.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 01:23:46] 2025-07-28 05:23:06,753 | INFO     | stage-out finished correctly
[2025-07-28 01:23:46] 2025-07-28 05:23:07,673 | INFO     | monitor loop #357: job 0:6748252520 is in state 'finished'
[2025-07-28 01:23:46] 2025-07-28 05:23:07,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:23:46] 2025-07-28 05:23:09,251 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 01:23:46] 2025-07-28 05:23:09,338 | INFO     | job 6748252520 has state=finished
[2025-07-28 01:23:46] 2025-07-28 05:23:09,338 | INFO     | preparing for final server update for job 6748252520 in state='finished'
[2025-07-28 01:23:46] 2025-07-28 05:23:09,338 | INFO     | this job has now completed (state=finished)
[2025-07-28 01:23:46] 2025-07-28 05:23:09,339 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 01:23:46] 2025-07-28 05:23:09,339 | INFO     | log transfer has been attempted: DONE
[2025-07-28 01:23:46] 2025-07-28 05:23:09,339 | INFO     | job 6748252520 has finished - writing final server update
[2025-07-28 01:23:46] 2025-07-28 05:23:09,339 | INFO     | total number of processed events: 400 (read)
[2025-07-28 01:23:46] 2025-07-28 05:23:09,340 | INFO     | executing command: lscpu
[2025-07-28 01:23:46] 2025-07-28 05:23:09,412 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 01:23:46] 2025-07-28 05:23:10,177 | INFO     | monitor loop #358: job 0:6748252520 is in state 'finished'
[2025-07-28 01:23:46] 2025-07-28 05:23:10,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:23:46] 2025-07-28 05:23:12,680 | INFO     | monitor loop #359: job 0:6748252520 is in state 'finished'
[2025-07-28 01:23:46] 2025-07-28 05:23:12,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:23:46] 2025-07-28 05:23:14,569 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 01:23:46] 2025-07-28 05:23:14,591 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2761.850625
[2025-07-28 01:23:46] 2025-07-28 05:23:14,600 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748252520/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:23:46] 2025-07-28 05:23:14,601 | INFO     | extracted standard info from prmon json
[2025-07-28 01:23:46] 2025-07-28 05:23:14,601 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:23:46] 2025-07-28 05:23:14,601 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:23:46] 2025-07-28 05:23:14,602 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:23:46] 2025-07-28 05:23:14,602 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:23:46] 2025-07-28 05:23:14,604 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:23:46] 2025-07-28 05:23:14,605 | INFO     | sum of square deviations: 115715658.0
[2025-07-28 01:23:46] 2025-07-28 05:23:14,605 | INFO     | sum of deviations: 1916016740.4999998
[2025-07-28 01:23:46] 2025-07-28 05:23:14,605 | INFO     | mean x: 1753677855.5
[2025-07-28 01:23:46] 2025-07-28 05:23:14,605 | INFO     | mean y: 2379099.1805555555
[2025-07-28 01:23:46] 2025-07-28 05:23:14,606 | INFO     | -- intersect: -29034971477.714916
[2025-07-28 01:23:46] 2025-07-28 05:23:14,606 | INFO     | intersect: -29034971477.714916
[2025-07-28 01:23:46] 2025-07-28 05:23:14,606 | INFO     | chi2: 0.04214218030621366
[2025-07-28 01:23:46] 2025-07-28 05:23:14,606 | INFO     | -- intersect: -29034971477.714916
[2025-07-28 01:23:46] 2025-07-28 05:23:14,606 | INFO     | current memory leak: 16.56 B/s (using 72 data points, chi2=0.04)
[2025-07-28 01:23:46] 2025-07-28 05:23:14,606 | INFO     | could have reported an average CPU frequency of 2768 MHz (6 samples)
[2025-07-28 01:23:46] 2025-07-28 05:23:14,607 | INFO     | ..............................
[2025-07-28 01:23:46] 2025-07-28 05:23:14,607 | INFO     | . Timing measurements:
[2025-07-28 01:23:46] 2025-07-28 05:23:14,607 | INFO     | . get job = 0 s
[2025-07-28 01:23:46] 2025-07-28 05:23:14,607 | INFO     | . initial setup = 2 s
[2025-07-28 01:23:46] 2025-07-28 05:23:14,607 | INFO     | . payload setup = 7 s
[2025-07-28 01:23:46] 2025-07-28 05:23:14,607 | INFO     | . stage-in = 0 s
[2025-07-28 01:23:46] 2025-07-28 05:23:14,607 | INFO     | . payload execution = 4802 s
[2025-07-28 01:23:46] 2025-07-28 05:23:14,607 | INFO     | . stage-out = 0 s
[2025-07-28 01:23:46] 2025-07-28 05:23:14,607 | INFO     | . log creation = 0 s
[2025-07-28 01:23:46] 2025-07-28 05:23:14,607 | INFO     | ..............................
[2025-07-28 01:23:46] 2025-07-28 05:23:14,703 | INFO     | 
[2025-07-28 01:23:46] 2025-07-28 05:23:14,703 | INFO     | job summary report
[2025-07-28 01:23:46] 2025-07-28 05:23:14,703 | INFO     | --------------------------------------------------
[2025-07-28 01:23:46] 2025-07-28 05:23:14,703 | INFO     | PanDA job id: 6748252520
[2025-07-28 01:23:46] 2025-07-28 05:23:14,703 | INFO     | task id: 45758910
[2025-07-28 01:23:46] 2025-07-28 05:23:14,703 | INFO     | errors: (none)
[2025-07-28 01:23:46] 2025-07-28 05:23:14,703 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | pilot state: finished 
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | transexitcode: 0
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | exeerrorcode: 0
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | exeerrordiag: 
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | exitcode: 0
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | exitmsg: OK
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | cpuconsumptiontime: 51469 s
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | nevents: 400
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | neventsw: 0
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | pid: 863580
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | pgrp: 863580
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | corecount: 12
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | event service: False
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | sizes: {0: 2396595, 1: 2397451, 6: 2397713, 12: 2397741, 4814: 2423989, 4815: 2432987, 4817: 2433171, 4823: 2433365}
[2025-07-28 01:23:46] 2025-07-28 05:23:14,704 | INFO     | --------------------------------------------------
[2025-07-28 01:23:46] 2025-07-28 05:23:14,705 | INFO     | 
[2025-07-28 01:23:46] 2025-07-28 05:23:14,705 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 01:23:46] 2025-07-28 05:23:14,728 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,729 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,729 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,729 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,729 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,729 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,729 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:23:46] 2025-07-28 05:23:14,730 | INFO     | job 6748252520 has completed (purged errors)
[2025-07-28 01:23:46] 2025-07-28 05:23:14,731 | INFO     | overall cleanup function is called
[2025-07-28 01:23:46] 2025-07-28 05:23:15,738 | INFO     | --- collectZombieJob: --- 10, [863580]
[2025-07-28 01:23:46] 2025-07-28 05:23:15,739 | INFO     | zombie collector waiting for pid 863580
[2025-07-28 01:23:46] 2025-07-28 05:23:15,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:23:46] 2025-07-28 05:23:15,739 | INFO     | collected zombie processes
[2025-07-28 01:23:46] 2025-07-28 05:23:15,739 | INFO     | will attempt to kill all subprocesses of pid=863580
[2025-07-28 01:23:46] 2025-07-28 05:23:16,024 | INFO     | process IDs to be killed: [863580] (in reverse order)
[2025-07-28 01:23:46] 2025-07-28 05:23:16,126 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:23:46] 2025-07-28 05:23:16,126 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:23:46] 2025-07-28 05:23:16,138 | INFO     | did not find any defunct processes belonging to 863580
[2025-07-28 01:23:46] 2025-07-28 05:23:16,149 | INFO     | did not find any defunct processes belonging to 863580
[2025-07-28 01:23:46] 2025-07-28 05:23:16,149 | INFO     | ready for new job
[2025-07-28 01:23:46] 2025-07-28 05:23:16,150 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:23:46] 2025-07-28 05:23:16,151 | INFO     | ***************************************
[2025-07-28 01:23:46] 2025-07-28 05:23:16,152 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:23:46] 2025-07-28 05:23:16,152 | INFO     | ***************************************
[2025-07-28 01:23:46] 2025-07-28 05:23:16,152 | INFO     | 
[2025-07-28 01:23:46] 2025-07-28 05:23:16,167 | INFO     | architecture information:
[2025-07-28 01:23:46] 2025-07-28 05:23:16,167 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:23:46] 2025-07-28 05:23:16,185 | INFO     | cat /etc/os-release:
[2025-07-28 01:23:46] NAME="CentOS Linux"
[2025-07-28 01:23:46] VERSION="7 (Core)"
[2025-07-28 01:23:46] ID="centos"
[2025-07-28 01:23:46] ID_LIKE="rhel fedora"
[2025-07-28 01:23:46] VERSION_ID="7"
[2025-07-28 01:23:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:23:46] ANSI_COLOR="0;31"
[2025-07-28 01:23:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:23:46] HOME_URL="https://www.centos.org/"
[2025-07-28 01:23:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:23:46] 
[2025-07-28 01:23:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:23:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:23:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:23:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:23:46] 
[2025-07-28 01:23:46] 2025-07-28 05:23:16,186 | INFO     | ***************************************
[2025-07-28 01:23:46] 2025-07-28 05:23:16,689 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 01:23:46] 2025-07-28 05:23:16,712 | INFO     | sufficient remaining disk space (58605961216 B)
[2025-07-28 01:23:46] 2025-07-28 05:23:16,712 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:23:46] 2025-07-28 05:23:16,713 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:23:46] 2025-07-28 05:23:16,713 | INFO     | update_server=False
[2025-07-28 01:23:46] 2025-07-28 05:23:16,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:23:46] 2025-07-28 05:23:16,713 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:23:46] 2025-07-28 05:23:16,714 | INFO     | aborting loop
[2025-07-28 01:23:46] 2025-07-28 05:23:16,925 | INFO     | all payload control threads have been joined
[2025-07-28 01:23:46] 2025-07-28 05:23:17,046 | INFO     | all job control threads have been joined
[2025-07-28 01:23:46] 2025-07-28 05:23:17,314 | INFO     | all data control threads have been joined
[2025-07-28 01:23:46] 2025-07-28 05:23:17,348 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:23:46] 2025-07-28 05:23:17,718 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:17,719 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:17,807 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:17,930 | INFO     | [payload] control thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:18,052 | INFO     | [job] control thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:18,079 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:18,237 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:18,260 | INFO     | [job] validate thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:18,319 | INFO     | [data] control thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:18,448 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:18,587 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:18,802 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:18,893 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:19,354 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:19,713 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:23:46] 2025-07-28 05:23:19,846 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:23:46] 2025-07-28 05:23:20,719 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:23,852 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:23:46] 2025-07-28 05:23:25,589 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140262031361856)>', '<ExcThread(monitor, started 140261392893696)>']
[2025-07-28 01:23:46] 2025-07-28 05:23:30,614 | INFO     | all workflow threads have been joined
[2025-07-28 01:23:46] 2025-07-28 05:23:30,615 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:23:46] 2025-07-28 05:23:30,615 | INFO     | traces error code: 0
[2025-07-28 01:23:46] 2025-07-28 05:23:30,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:23:46] 2025-07-28 05:23:46,154 | INFO     | PID=856873 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 01:23:46] 2025-07-28 05:23:46,155 | INFO     | .. there are 13 such processes running
[2025-07-28 01:23:46] 2025-07-28 05:23:46,155 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:23:46] 2025-07-28 05:23:46,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:23:46] 2025-07-28 05:23:46,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:23:46] 2025-07-28 05:23:46,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:23:46] 2025-07-28 05:23:46,156 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 01:23:46] 2025-07-28 05:23:46,156 | INFO     | [monitor] control thread has ended
[2025-07-28 01:23:46] 2025-07-28 05:23:46,321 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:23:46] 2025-07-28 05:23:46,325 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:23:46] 2025-07-28 05:23:46,329 [wrapper] pilotpid: 856873
[2025-07-28 01:23:46] 2025-07-28 05:23:46,332 [wrapper] Pilot exit status: 0
[2025-07-28 01:23:46] 2025-07-28 05:23:46,351 [wrapper] pandaids: 6748252520
[2025-07-28 01:23:46] 2025-07-28 05:23:46,439 [wrapper] cleanup supervisor_pilot 1205127 856874
[2025-07-28 01:23:46] 2025-07-28 05:23:46,443 [wrapper] Test setup, not cleaning
[2025-07-28 01:23:46] 2025-07-28 05:23:46,447 [wrapper] apfmon messages muted
[2025-07-28 01:23:46] 2025-07-28 05:23:46,451 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:23:46] 2025-07-28 05:23:46,456 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:23:46]  *** Error codes and diagnostics ***
[2025-07-28 01:23:46]     "exeErrorCode": 0,
[2025-07-28 01:23:46]     "exeErrorDiag": "",
[2025-07-28 01:23:46]     "pilotErrorCode": 0,
[2025-07-28 01:23:46]     "pilotErrorDiag": "",
[2025-07-28 01:23:46]  *** Listing of results directory ***
[2025-07-28 01:23:46] total 394956
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:58 pilot3.tar.gz
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 17:15 queuedata.json
[2025-07-28 01:23:46] -rwx------. 1 boincer umatlas     36292 Jul 27 17:15 runpilot2-wrapper.sh
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas       100 Jul 28 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:23:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 00:02 run_atlas
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas       105 Jul 28 00:02 job.xml
[2025-07-28 01:23:46] -rw-r--r--. 2 boincer umatlas 234804447 Jul 28 00:02 EVNT.45758908._000003.pool.root.1
[2025-07-28 01:23:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 00:02 start_atlas.sh
[2025-07-28 01:23:46] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 00:02 shared
[2025-07-28 01:23:46] -rw-r--r--. 2 boincer umatlas    542900 Jul 28 00:02 input.tar.gz
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas         0 Jul 28 00:02 boinc_lockfile
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas      2567 Jul 28 00:02 pandaJob.out
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas    980117 Jul 28 00:02 agis_schedconf.cvmfs.json
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas   1593052 Jul 28 00:02 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:23:46] drwx------. 4 boincer umatlas      4096 Jul 28 00:02 pilot3
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas 164093324 Jul 28 01:22 HITS.45758910._000127.pool.root.1
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas      6842 Jul 28 01:22 init_data.xml
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas       529 Jul 28 01:22 boinc_task_state.xml
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas      1037 Jul 28 01:23 memory_monitor_summary.json
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas    354783 Jul 28 01:23 log.45758910._000127.job.log.tgz.1
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas        95 Jul 28 01:23 pilot_heartbeat.json
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas      7809 Jul 28 01:23 heartbeat.json
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 01:23 boinc_mmap_file
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas        27 Jul 28 01:23 wrapper_checkpoint.txt
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas       892 Jul 28 01:23 pilotlog.txt
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas    476734 Jul 28 01:23 log.45758910._000127.job.log.1
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas       357 Jul 28 01:23 output.list
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas       620 Jul 28 01:23 runtime_log
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas    849920 Jul 28 01:23 result.tar.gz
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 01:23 runtime_log.err
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas       655 Jul 28 01:23 OuhNDmFtN07n9Rq4apOajLDm4fhM0noT9bVof3QYDmH82KDmS39dZn.diag
[2025-07-28 01:23:46] -rw-r--r--. 1 boincer umatlas     21662 Jul 28 01:23 stderr.txt
[2025-07-28 01:23:46] HITS file was successfully produced:
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas 164093324 Jul 28 01:22 shared/HITS.pool.root.1
[2025-07-28 01:23:46]  *** Contents of shared directory: ***
[2025-07-28 01:23:46] total 390936
[2025-07-28 01:23:46] -rw-r--r--. 2 boincer umatlas 234804447 Jul 28 00:02 ATLAS.root_0
[2025-07-28 01:23:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 00:02 start_atlas.sh
[2025-07-28 01:23:46] -rw-r--r--. 2 boincer umatlas    542900 Jul 28 00:02 input.tar.gz
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas 164093324 Jul 28 01:22 HITS.pool.root.1
[2025-07-28 01:23:46] -rw-------. 1 boincer umatlas    849920 Jul 28 01:23 result.tar.gz
01:23:47 (852777): run_atlas exited; CPU time 51570.839358
01:23:47 (852777): called boinc_finish(0)

</stderr_txt>
]]>

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