Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:36:12 (3095216): wrapper (7.7.26015): starting
22:36:12 (3095216): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 22:36:12] Arguments: --nthreads 8
[2025-07-27 22:36:12] Threads: 8
[2025-07-27 22:36:12] Checking for CVMFS
[2025-07-27 22:36:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:36:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:36:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:36:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:36:13] 2.13.1.0 5036 14831 261852 148832 2 196 35875034 40960000 10243 16776704 0 80426615 99.780 68362308 33635 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:36:13] CVMFS is ok
[2025-07-27 22:36:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:36:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:36:13] Further information can be found at the LHC@home message board.
[2025-07-27 22:36:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:36:13] Checking for apptainer binary...
[2025-07-27 22:36:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:36:13] Running /usr/bin/apptainer --version
[2025-07-27 22:36:13] apptainer version 1.4.1-1.el9
[2025-07-27 22:36:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:36:13] c-212-2.aglt2.org
[2025-07-27 22:36:13] apptainer works
[2025-07-27 22:36:13] Set ATHENA_PROC_NUMBER=8
[2025-07-27 22:36:13] Set ATHENA_CORE_NUMBER=8
[2025-07-27 22:36:13] Starting ATLAS job with PandaID=6748134672
[2025-07-27 22:36:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:56:05]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:56:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:56:05]  replicas=None
[2025-07-27 23:56:05]  scope=mc23_13p6TeV
[2025-07-27 23:56:05]  status=None
[2025-07-27 23:56:05]  status_code=0
[2025-07-27 23:56:05]  storage_token=
[2025-07-27 23:56:05]  surl=/tmp/boinchome/slots/10/PanDA_Pilot-6748134672/log.45743349._055602.job.log.tgz.1
[2025-07-27 23:56:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/1e/log.45743349._055602.job.log.tgz.1
[2025-07-27 23:56:05]  workdir=None
[2025-07-27 23:56:05] ]
[2025-07-27 23:56:05] 2025-07-28 03:55:24,226 | INFO     | transferring file log.45743349._055602.job.log.tgz.1 from /tmp/boinchome/slots/10/PanDA_Pilot-6748134672/log.45743349._055602.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-27 23:56:05] 2025-07-28 03:55:24,227 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/10/PanDA_Pilot-6748134672/log.45743349._055602.job.log.tgz.1 /tmp/boinchome/slots/10/log.45743349._055602.j
[2025-07-27 23:56:05] 2025-07-28 03:55:24,254 | INFO     | adding to output.list: log.45743349._055602.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/1e/log.45743349._055602.job.log.tg
[2025-07-27 23:56:05] 2025-07-28 03:55:24,255 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:56:05] 2025-07-28 03:55:24,255 | INFO     | summary of transferred files:
[2025-07-27 23:56:05] 2025-07-28 03:55:24,256 | INFO     |  -- lfn=log.45743349._055602.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:56:05] 2025-07-28 03:55:24,256 | INFO     | stage-out finished correctly
[2025-07-27 23:56:05] 2025-07-28 03:55:24,507 | WARNING  | process 3106617 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 23:56:05] 2025-07-28 03:55:24,508 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6748134672/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:56:05] 2025-07-28 03:55:24,826 | INFO     | number of running child processes to parent process 3106617: 1
[2025-07-27 23:56:05] 2025-07-28 03:55:24,826 | INFO     | maximum number of monitored processes: 6
[2025-07-27 23:56:05] 2025-07-28 03:55:27,330 | INFO     | monitor loop #347: job 0:6748134672 is in state 'finished'
[2025-07-27 23:56:05] 2025-07-28 03:55:27,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:56:05] 2025-07-28 03:55:27,454 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:56:05] 2025-07-28 03:55:28,990 | INFO     | job 6748134672 has state=finished
[2025-07-27 23:56:05] 2025-07-28 03:55:28,990 | INFO     | preparing for final server update for job 6748134672 in state='finished'
[2025-07-27 23:56:05] 2025-07-28 03:55:28,991 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:56:05] 2025-07-28 03:55:28,991 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:56:05] 2025-07-28 03:55:28,991 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:56:05] 2025-07-28 03:55:28,991 | INFO     | job 6748134672 has finished - writing final server update
[2025-07-27 23:56:05] 2025-07-28 03:55:28,992 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:56:05] 2025-07-28 03:55:28,992 | INFO     | executing command: lscpu
[2025-07-27 23:56:05] 2025-07-28 03:55:29,062 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:56:05] 2025-07-28 03:55:29,833 | INFO     | monitor loop #348: job 0:6748134672 is in state 'finished'
[2025-07-27 23:56:05] 2025-07-28 03:55:29,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:56:05] 2025-07-28 03:55:32,338 | INFO     | monitor loop #349: job 0:6748134672 is in state 'finished'
[2025-07-27 23:56:05] 2025-07-28 03:55:32,338 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:56:05] 2025-07-28 03:55:33,151 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 23:56:05] 2025-07-28 03:55:33,156 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3283.626437500001
[2025-07-27 23:56:05] 2025-07-28 03:55:33,169 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6748134672/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:56:05] 2025-07-28 03:55:33,170 | INFO     | extracted standard info from prmon json
[2025-07-27 23:56:05] 2025-07-28 03:55:33,170 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:56:05] 2025-07-28 03:55:33,170 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:56:05] 2025-07-28 03:55:33,170 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:56:05] 2025-07-28 03:55:33,170 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:56:05] 2025-07-28 03:55:33,171 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:56:05] 2025-07-28 03:55:33,172 | INFO     | sum of square deviations: 110960220.0
[2025-07-27 23:56:05] 2025-07-28 03:55:33,172 | INFO     | sum of deviations: -1541906516.0
[2025-07-27 23:56:05] 2025-07-28 03:55:33,172 | INFO     | mean x: 1753672658.0
[2025-07-27 23:56:05] 2025-07-28 03:55:33,172 | INFO     | mean y: 2541742.3661971833
[2025-07-27 23:56:05] 2025-07-28 03:55:33,172 | INFO     | -- intersect: 24371629135.138485
[2025-07-27 23:56:05] 2025-07-28 03:55:33,172 | INFO     | intersect: 24371629135.138485
[2025-07-27 23:56:05] 2025-07-28 03:55:33,172 | INFO     | chi2: 0.0029737631395057606
[2025-07-27 23:56:05] 2025-07-28 03:55:33,172 | INFO     | -- intersect: 24371629135.138485
[2025-07-27 23:56:05] 2025-07-28 03:55:33,172 | INFO     | current memory leak: -13.90 B/s (using 71 data points, chi2=0.00)
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | could have reported an average CPU frequency of 3282 MHz (6 samples)
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | ..............................
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | . Timing measurements:
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | . get job = 0 s
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | . initial setup = 2 s
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | . payload setup = 8 s
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | . stage-in = 0 s
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | . payload execution = 4708 s
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | . stage-out = 0 s
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | . log creation = 0 s
[2025-07-27 23:56:05] 2025-07-28 03:55:33,173 | INFO     | ..............................
[2025-07-27 23:56:05] 2025-07-28 03:55:33,316 | INFO     | 
[2025-07-27 23:56:05] 2025-07-28 03:55:33,316 | INFO     | job summary report
[2025-07-27 23:56:05] 2025-07-28 03:55:33,316 | INFO     | --------------------------------------------------
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | PanDA job id: 6748134672
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | task id: 45743349
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | errors: (none)
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | pilot state: finished 
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | transexitcode: 0
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | exeerrorcode: 0
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | exeerrordiag: 
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | exitcode: 0
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | exitmsg: OK
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | cpuconsumptiontime: 34506 s
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | nevents: 400
[2025-07-27 23:56:05] 2025-07-28 03:55:33,317 | INFO     | neventsw: 0
[2025-07-27 23:56:05] 2025-07-28 03:55:33,318 | INFO     | pid: 3106617
[2025-07-27 23:56:05] 2025-07-28 03:55:33,318 | INFO     | pgrp: 3106617
[2025-07-27 23:56:05] 2025-07-28 03:55:33,318 | INFO     | corecount: 8
[2025-07-27 23:56:05] 2025-07-28 03:55:33,318 | INFO     | event service: False
[2025-07-27 23:56:05] 2025-07-28 03:55:33,318 | INFO     | sizes: {0: 2397426, 1: 2397426, 6: 2397716, 11: 2397744, 4720: 2423907, 4721: 2432907, 4724: 2433091, 4730: 2433285}
[2025-07-27 23:56:05] 2025-07-28 03:55:33,318 | INFO     | --------------------------------------------------
[2025-07-27 23:56:05] 2025-07-28 03:55:33,318 | INFO     | 
[2025-07-27 23:56:05] 2025-07-28 03:55:33,318 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-07-27 23:56:05] 2025-07-28 03:55:33,355 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,356 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,357 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,357 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,357 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,357 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,357 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:56:05] 2025-07-28 03:55:33,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,357 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:56:05] 2025-07-28 03:55:33,357 | INFO     | job 6748134672 has completed (purged errors)
[2025-07-27 23:56:05] 2025-07-28 03:55:33,357 | INFO     | overall cleanup function is called
[2025-07-27 23:56:05] 2025-07-28 03:55:34,364 | INFO     | --- collectZombieJob: --- 10, [3106617]
[2025-07-27 23:56:05] 2025-07-28 03:55:34,365 | INFO     | zombie collector waiting for pid 3106617
[2025-07-27 23:56:05] 2025-07-28 03:55:34,365 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:56:05] 2025-07-28 03:55:34,365 | INFO     | collected zombie processes
[2025-07-27 23:56:05] 2025-07-28 03:55:34,365 | INFO     | will attempt to kill all subprocesses of pid=3106617
[2025-07-27 23:56:05] 2025-07-28 03:55:34,745 | INFO     | process IDs to be killed: [3106617] (in reverse order)
[2025-07-27 23:56:05] 2025-07-28 03:55:34,862 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:56:05] 2025-07-28 03:55:34,863 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:56:05] 2025-07-28 03:55:34,878 | INFO     | did not find any defunct processes belonging to 3106617
[2025-07-27 23:56:05] 2025-07-28 03:55:34,892 | INFO     | did not find any defunct processes belonging to 3106617
[2025-07-27 23:56:05] 2025-07-28 03:55:34,892 | INFO     | ready for new job
[2025-07-27 23:56:05] 2025-07-28 03:55:34,893 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:56:05] 2025-07-28 03:55:34,894 | INFO     | ***************************************
[2025-07-27 23:56:05] 2025-07-28 03:55:34,895 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:56:05] 2025-07-28 03:55:34,895 | INFO     | ***************************************
[2025-07-27 23:56:05] 2025-07-28 03:55:34,895 | INFO     | 
[2025-07-27 23:56:05] 2025-07-28 03:55:34,900 | INFO     | architecture information:
[2025-07-27 23:56:05] 2025-07-28 03:55:34,900 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:56:05] 2025-07-28 03:55:34,921 | INFO     | cat /etc/os-release:
[2025-07-27 23:56:05] NAME="CentOS Linux"
[2025-07-27 23:56:05] VERSION="7 (Core)"
[2025-07-27 23:56:05] ID="centos"
[2025-07-27 23:56:05] ID_LIKE="rhel fedora"
[2025-07-27 23:56:05] VERSION_ID="7"
[2025-07-27 23:56:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:56:05] ANSI_COLOR="0;31"
[2025-07-27 23:56:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:56:05] HOME_URL="https://www.centos.org/"
[2025-07-27 23:56:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:56:05] 
[2025-07-27 23:56:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:56:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:56:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:56:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:56:05] 
[2025-07-27 23:56:05] 2025-07-28 03:55:34,922 | INFO     | ***************************************
[2025-07-27 23:56:05] 2025-07-28 03:55:35,424 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-07-27 23:56:05] 2025-07-28 03:55:35,451 | INFO     | sufficient remaining disk space (124495331328 B)
[2025-07-27 23:56:05] 2025-07-28 03:55:35,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:56:05] 2025-07-28 03:55:35,451 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:56:05] 2025-07-28 03:55:35,452 | INFO     | update_server=False
[2025-07-27 23:56:05] 2025-07-28 03:55:35,452 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:56:05] 2025-07-28 03:55:35,452 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:56:05] 2025-07-28 03:55:35,470 | INFO     | all job control threads have been joined
[2025-07-27 23:56:05] 2025-07-28 03:55:35,767 | INFO     | all data control threads have been joined
[2025-07-27 23:56:05] 2025-07-28 03:55:35,847 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:56:05] 2025-07-28 03:55:35,847 | INFO     | aborting loop
[2025-07-27 23:56:05] 2025-07-28 03:55:35,901 | INFO     | all payload control threads have been joined
[2025-07-27 23:56:05] 2025-07-28 03:55:36,457 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:36,475 | INFO     | [job] control thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:36,774 | INFO     | [data] control thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:36,852 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:36,907 | INFO     | [payload] control thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:37,076 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:37,124 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:37,129 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:37,374 | INFO     | [job] validate thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:37,445 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:37,457 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:37,749 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:37,764 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:37,839 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:38,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:56:05] 2025-07-28 03:55:38,252 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:56:05] 2025-07-28 03:55:39,257 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:42,046 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:56:05] 2025-07-28 03:55:43,896 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139823169296192)>', '<ExcThread(monitor, started 139822828074752)>']
[2025-07-27 23:56:05] 2025-07-28 03:55:48,922 | INFO     | all workflow threads have been joined
[2025-07-27 23:56:05] 2025-07-28 03:55:48,922 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:56:05] 2025-07-28 03:55:48,923 | INFO     | traces error code: 0
[2025-07-27 23:56:05] 2025-07-28 03:55:48,923 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:56:05] 2025-07-28 03:56:04,865 | INFO     | PID=3098792 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 23:56:05] 2025-07-28 03:56:04,865 | INFO     | .. there are 12 such processes running
[2025-07-27 23:56:05] 2025-07-28 03:56:04,866 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:56:05] 2025-07-28 03:56:04,866 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:56:05] 2025-07-28 03:56:04,866 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:56:05] 2025-07-28 03:56:04,866 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:56:05] 2025-07-28 03:56:04,866 | INFO     | [monitor] control thread has ended
[2025-07-27 23:56:05] 2025-07-28 03:56:04,976 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:56:05] 2025-07-28 03:56:04,980 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:56:05] 2025-07-28 03:56:04,984 [wrapper] pilotpid: 3098792
[2025-07-27 23:56:05] 2025-07-28 03:56:04,986 [wrapper] Pilot exit status: 0
[2025-07-27 23:56:05] 2025-07-28 03:56:05,001 [wrapper] pandaids: 6748134672
[2025-07-27 23:56:05] 2025-07-28 03:56:05,086 [wrapper] cleanup supervisor_pilot 3366831 3098793
[2025-07-27 23:56:05] 2025-07-28 03:56:05,090 [wrapper] Test setup, not cleaning
[2025-07-27 23:56:05] 2025-07-28 03:56:05,094 [wrapper] apfmon messages muted
[2025-07-27 23:56:05] 2025-07-28 03:56:05,097 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:56:05] 2025-07-28 03:56:05,101 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:56:05]  *** Error codes and diagnostics ***
[2025-07-27 23:56:05]     "exeErrorCode": 0,
[2025-07-27 23:56:05]     "exeErrorDiag": "",
[2025-07-27 23:56:05]     "pilotErrorCode": 0,
[2025-07-27 23:56:05]     "pilotErrorDiag": "",
[2025-07-27 23:56:05]  *** Listing of results directory ***
[2025-07-27 23:56:05] total 356808
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:58 pilot3.tar.gz
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 17:08 queuedata.json
[2025-07-27 23:56:05] -rwx------. 1 boincer umatlas     36292 Jul 27 17:08 runpilot2-wrapper.sh
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:56:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:36 run_atlas
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:36 job.xml
[2025-07-27 23:56:05] -rw-r--r--. 2 boincer umatlas 147187548 Jul 27 22:36 EVNT.45743347._001919.pool.root.1
[2025-07-27 23:56:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:36 start_atlas.sh
[2025-07-27 23:56:05] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:36 shared
[2025-07-27 23:56:05] -rw-r--r--. 2 boincer umatlas    542905 Jul 27 22:36 input.tar.gz
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:36 boinc_lockfile
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 22:36 pandaJob.out
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas    980125 Jul 27 22:36 agis_schedconf.cvmfs.json
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:36 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:56:05] drwx------. 4 boincer umatlas      4096 Jul 27 22:36 pilot3
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas      6948 Jul 27 23:49 init_data.xml
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas       530 Jul 27 23:54 boinc_task_state.xml
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas 212767925 Jul 27 23:54 HITS.45743349._055602.pool.root.1
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas        95 Jul 27 23:55 pilot_heartbeat.json
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas      1025 Jul 27 23:55 memory_monitor_summary.json
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas    301044 Jul 27 23:55 log.45743349._055602.job.log.tgz.1
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas      7763 Jul 27 23:55 heartbeat.json
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas       823 Jul 27 23:56 pilotlog.txt
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 23:56 boinc_mmap_file
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas        27 Jul 27 23:56 wrapper_checkpoint.txt
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas    465648 Jul 27 23:56 log.45743349._055602.job.log.1
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas       357 Jul 27 23:56 output.list
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas       620 Jul 27 23:56 runtime_log
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas    788480 Jul 27 23:56 result.tar.gz
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas      8669 Jul 27 23:56 runtime_log.err
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas       650 Jul 27 23:56 QY9NDm8mN07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXSWLDmj0y1fn.diag
[2025-07-27 23:56:05] -rw-r--r--. 1 boincer umatlas     21967 Jul 27 23:56 stderr.txt
[2025-07-27 23:56:05] HITS file was successfully produced:
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas 212767925 Jul 27 23:54 shared/HITS.pool.root.1
[2025-07-27 23:56:05]  *** Contents of shared directory: ***
[2025-07-27 23:56:05] total 352852
[2025-07-27 23:56:05] -rw-r--r--. 2 boincer umatlas 147187548 Jul 27 22:36 ATLAS.root_0
[2025-07-27 23:56:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:36 start_atlas.sh
[2025-07-27 23:56:05] -rw-r--r--. 2 boincer umatlas    542905 Jul 27 22:36 input.tar.gz
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas 212767925 Jul 27 23:54 HITS.pool.root.1
[2025-07-27 23:56:05] -rw-------. 1 boincer umatlas    788480 Jul 27 23:56 result.tar.gz
23:56:07 (3095216): run_atlas exited; CPU time 34639.282509
23:56:07 (3095216): called boinc_finish(0)

</stderr_txt>
]]>

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