Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:42:33 (1868272): wrapper (7.7.26015): starting
23:42:33 (1868272): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 23:42:33] Arguments: --nthreads 12
[2025-07-27 23:42:33] Threads: 12
[2025-07-27 23:42:33] Checking for CVMFS
[2025-07-27 23:42:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:42:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:42:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:42:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:42:34] 2.12.6.0 18753 19297 313820 148834 2 103 24639073 32935936 8398 16776704 0 34671013 99.615 74926549 26047 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 23:42:34] CVMFS is ok
[2025-07-27 23:42:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:42:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:42:34] Further information can be found at the LHC@home message board.
[2025-07-27 23:42:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:42:34] Checking for apptainer binary...
[2025-07-27 23:42:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:42:34] Running /usr/bin/apptainer --version
[2025-07-27 23:42:34] apptainer version 1.4.1-1.el9
[2025-07-27 23:42:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:42:34] c6-1-24-4.aglt2.org
[2025-07-27 23:42:34] apptainer works
[2025-07-27 23:42:34] Set ATHENA_PROC_NUMBER=12
[2025-07-27 23:42:34] Set ATHENA_CORE_NUMBER=12
[2025-07-27 23:42:34] Starting ATLAS job with PandaID=6748128458
[2025-07-27 23:42:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:08:53]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:08:53]  replicas=None
[2025-07-28 01:08:53]  scope=mc23_13p6TeV
[2025-07-28 01:08:53]  status=None
[2025-07-28 01:08:53]  status_code=0
[2025-07-28 01:08:53]  storage_token=
[2025-07-28 01:08:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748128458/log.45758416._000126.job.log.tgz.1
[2025-07-28 01:08:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/17/log.45758416._000126.job.log.tgz.1
[2025-07-28 01:08:53]  workdir=None
[2025-07-28 01:08:53] ]
[2025-07-28 01:08:53] 2025-07-28 05:08:12,477 | INFO     | transferring file log.45758416._000126.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748128458/log.45758416._000126.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 01:08:53] 2025-07-28 05:08:12,478 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748128458/log.45758416._000126.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758416._000126.job
[2025-07-28 01:08:53] 2025-07-28 05:08:12,500 | INFO     | adding to output.list: log.45758416._000126.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/17/log.45758416._000126.job.log.tg
[2025-07-28 01:08:53] 2025-07-28 05:08:12,501 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 01:08:53] 2025-07-28 05:08:12,501 | INFO     | summary of transferred files:
[2025-07-28 01:08:53] 2025-07-28 05:08:12,501 | INFO     |  -- lfn=log.45758416._000126.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 01:08:53] 2025-07-28 05:08:12,501 | INFO     | stage-out finished correctly
[2025-07-28 01:08:53] 2025-07-28 05:08:13,084 | INFO     | PID=1871913 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:08:53] 2025-07-28 05:08:13,084 | INFO     | .. there are 11 such processes running
[2025-07-28 01:08:53] 2025-07-28 05:08:14,887 | WARNING  | process 1878309 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 01:08:53] 2025-07-28 05:08:14,888 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748128458/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:08:53] 2025-07-28 05:08:15,155 | INFO     | number of running child processes to parent process 1878309: 1
[2025-07-28 01:08:53] 2025-07-28 05:08:15,156 | INFO     | maximum number of monitored processes: 6
[2025-07-28 01:08:53] 2025-07-28 05:08:15,636 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 01:08:53] 2025-07-28 05:08:15,722 | INFO     | job 6748128458 has state=finished
[2025-07-28 01:08:53] 2025-07-28 05:08:15,722 | INFO     | preparing for final server update for job 6748128458 in state='finished'
[2025-07-28 01:08:53] 2025-07-28 05:08:15,723 | INFO     | this job has now completed (state=finished)
[2025-07-28 01:08:53] 2025-07-28 05:08:15,723 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 01:08:53] 2025-07-28 05:08:15,723 | INFO     | log transfer has been attempted: DONE
[2025-07-28 01:08:53] 2025-07-28 05:08:15,723 | INFO     | job 6748128458 has finished - writing final server update
[2025-07-28 01:08:53] 2025-07-28 05:08:15,724 | INFO     | total number of processed events: 400 (read)
[2025-07-28 01:08:53] 2025-07-28 05:08:15,724 | INFO     | executing command: lscpu
[2025-07-28 01:08:53] 2025-07-28 05:08:15,781 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 01:08:53] 2025-07-28 05:08:17,660 | INFO     | monitor loop #371: job 0:6748128458 is in state 'finished'
[2025-07-28 01:08:53] 2025-07-28 05:08:17,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:08:53] 2025-07-28 05:08:20,163 | INFO     | monitor loop #372: job 0:6748128458 is in state 'finished'
[2025-07-28 01:08:53] 2025-07-28 05:08:20,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:08:53] 2025-07-28 05:08:20,788 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 01:08:53] 2025-07-28 05:08:20,804 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2668.4747142857136
[2025-07-28 01:08:53] 2025-07-28 05:08:20,813 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748128458/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:08:53] 2025-07-28 05:08:20,814 | INFO     | extracted standard info from prmon json
[2025-07-28 01:08:53] 2025-07-28 05:08:20,814 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:08:53] 2025-07-28 05:08:20,814 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:08:53] 2025-07-28 05:08:20,815 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:08:53] 2025-07-28 05:08:20,815 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:08:53] 2025-07-28 05:08:20,817 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:08:53] 2025-07-28 05:08:20,817 | INFO     | sum of square deviations: 141541716.9870133
[2025-07-28 01:08:53] 2025-07-28 05:08:20,818 | INFO     | sum of deviations: -12893381300.94806
[2025-07-28 01:08:53] 2025-07-28 05:08:20,818 | INFO     | mean x: 1753676817.012987
[2025-07-28 01:08:53] 2025-07-28 05:08:20,818 | INFO     | mean y: 2486990.948051948
[2025-07-28 01:08:53] 2025-07-28 05:08:20,818 | INFO     | -- intersect: 159749198855.8037
[2025-07-28 01:08:53] 2025-07-28 05:08:20,818 | INFO     | intersect: 159749198855.8037
[2025-07-28 01:08:53] 2025-07-28 05:08:20,818 | INFO     | chi2: 0.18502999146378082
[2025-07-28 01:08:53] 2025-07-28 05:08:20,819 | INFO     | -- intersect: 159749198855.8037
[2025-07-28 01:08:53] 2025-07-28 05:08:20,819 | INFO     | current memory leak: -91.09 B/s (using 77 data points, chi2=0.19)
[2025-07-28 01:08:53] 2025-07-28 05:08:20,819 | INFO     | could have reported an average CPU frequency of 2651 MHz (6 samples)
[2025-07-28 01:08:53] 2025-07-28 05:08:20,819 | INFO     | ..............................
[2025-07-28 01:08:53] 2025-07-28 05:08:20,820 | INFO     | . Timing measurements:
[2025-07-28 01:08:53] 2025-07-28 05:08:20,820 | INFO     | . get job = 0 s
[2025-07-28 01:08:53] 2025-07-28 05:08:20,820 | INFO     | . initial setup = 3 s
[2025-07-28 01:08:53] 2025-07-28 05:08:20,820 | INFO     | . payload setup = 7 s
[2025-07-28 01:08:53] 2025-07-28 05:08:20,820 | INFO     | . stage-in = 0 s
[2025-07-28 01:08:53] 2025-07-28 05:08:20,820 | INFO     | . payload execution = 5098 s
[2025-07-28 01:08:53] 2025-07-28 05:08:20,820 | INFO     | . stage-out = 0 s
[2025-07-28 01:08:53] 2025-07-28 05:08:20,820 | INFO     | . log creation = 0 s
[2025-07-28 01:08:53] 2025-07-28 05:08:20,820 | INFO     | ..............................
[2025-07-28 01:08:53] 2025-07-28 05:08:20,931 | INFO     | 
[2025-07-28 01:08:53] 2025-07-28 05:08:20,932 | INFO     | job summary report
[2025-07-28 01:08:53] 2025-07-28 05:08:20,932 | INFO     | --------------------------------------------------
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | PanDA job id: 6748128458
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | task id: 45758416
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | errors: (none)
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | pilot state: finished 
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | transexitcode: 0
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | exeerrorcode: 0
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | exeerrordiag: 
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | exitcode: 0
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | exitmsg: OK
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | cpuconsumptiontime: 54370 s
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | nevents: 400
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | neventsw: 0
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | pid: 1878309
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | pgrp: 1878309
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | corecount: 12
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | event service: False
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | sizes: {0: 2397251, 1: 2397450, 6: 2397712, 12: 2397740, 5109: 2423933, 5110: 2423932, 5111: 2433114, 5114: 2433170, 5119: 2433364}
[2025-07-28 01:08:53] 2025-07-28 05:08:20,933 | INFO     | --------------------------------------------------
[2025-07-28 01:08:53] 2025-07-28 05:08:20,934 | INFO     | 
[2025-07-28 01:08:53] 2025-07-28 05:08:20,934 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,956 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | job 6748128458 has completed (purged errors)
[2025-07-28 01:08:53] 2025-07-28 05:08:20,957 | INFO     | overall cleanup function is called
[2025-07-28 01:08:53] 2025-07-28 05:08:21,963 | INFO     | --- collectZombieJob: --- 10, [1878309]
[2025-07-28 01:08:53] 2025-07-28 05:08:21,964 | INFO     | zombie collector waiting for pid 1878309
[2025-07-28 01:08:53] 2025-07-28 05:08:21,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:08:53] 2025-07-28 05:08:21,964 | INFO     | collected zombie processes
[2025-07-28 01:08:53] 2025-07-28 05:08:21,964 | INFO     | will attempt to kill all subprocesses of pid=1878309
[2025-07-28 01:08:53] 2025-07-28 05:08:22,266 | INFO     | process IDs to be killed: [1878309] (in reverse order)
[2025-07-28 01:08:53] 2025-07-28 05:08:22,365 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:08:53] 2025-07-28 05:08:22,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:08:53] 2025-07-28 05:08:22,376 | INFO     | did not find any defunct processes belonging to 1878309
[2025-07-28 01:08:53] 2025-07-28 05:08:22,387 | INFO     | did not find any defunct processes belonging to 1878309
[2025-07-28 01:08:53] 2025-07-28 05:08:22,387 | INFO     | ready for new job
[2025-07-28 01:08:53] 2025-07-28 05:08:22,388 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:08:53] 2025-07-28 05:08:22,390 | INFO     | ***************************************
[2025-07-28 01:08:53] 2025-07-28 05:08:22,390 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:08:53] 2025-07-28 05:08:22,390 | INFO     | ***************************************
[2025-07-28 01:08:53] 2025-07-28 05:08:22,390 | INFO     | 
[2025-07-28 01:08:53] 2025-07-28 05:08:22,406 | INFO     | architecture information:
[2025-07-28 01:08:53] 2025-07-28 05:08:22,407 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:08:53] 2025-07-28 05:08:22,423 | INFO     | cat /etc/os-release:
[2025-07-28 01:08:53] NAME="CentOS Linux"
[2025-07-28 01:08:53] VERSION="7 (Core)"
[2025-07-28 01:08:53] ID="centos"
[2025-07-28 01:08:53] ID_LIKE="rhel fedora"
[2025-07-28 01:08:53] VERSION_ID="7"
[2025-07-28 01:08:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:08:53] ANSI_COLOR="0;31"
[2025-07-28 01:08:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:08:53] HOME_URL="https://www.centos.org/"
[2025-07-28 01:08:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:08:53] 
[2025-07-28 01:08:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:08:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:08:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:08:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:08:53] 
[2025-07-28 01:08:53] 2025-07-28 05:08:22,424 | INFO     | ***************************************
[2025-07-28 01:08:53] 2025-07-28 05:08:22,927 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 01:08:53] 2025-07-28 05:08:22,948 | INFO     | sufficient remaining disk space (76291244032 B)
[2025-07-28 01:08:53] 2025-07-28 05:08:22,948 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:08:53] 2025-07-28 05:08:22,948 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:08:53] 2025-07-28 05:08:22,949 | INFO     | update_server=False
[2025-07-28 01:08:53] 2025-07-28 05:08:22,949 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:08:53] 2025-07-28 05:08:23,077 | INFO     | all data control threads have been joined
[2025-07-28 01:08:53] 2025-07-28 05:08:23,105 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:08:53] 2025-07-28 05:08:23,674 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:08:53] 2025-07-28 05:08:23,675 | INFO     | aborting loop
[2025-07-28 01:08:53] 2025-07-28 05:08:23,953 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:24,009 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:24,083 | INFO     | [data] control thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:24,194 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:24,258 | INFO     | [job] validate thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:24,264 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:24,290 | INFO     | all payload control threads have been joined
[2025-07-28 01:08:53] 2025-07-28 05:08:24,418 | INFO     | all job control threads have been joined
[2025-07-28 01:08:53] 2025-07-28 05:08:24,679 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:25,110 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:25,158 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:25,295 | INFO     | [payload] control thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:25,335 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:25,420 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:25,423 | INFO     | [job] control thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:25,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:08:53] 2025-07-28 05:08:26,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:08:53] 2025-07-28 05:08:26,948 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:30,240 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:33,970 | INFO     | job.realtimelogging is not enabled
[2025-07-28 01:08:53] 2025-07-28 05:08:34,975 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:08:53] 2025-07-28 05:08:35,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140090497963840)>', '<ExcThread(monitor, started 140089862637312)>']
[2025-07-28 01:08:53] 2025-07-28 05:08:40,843 | INFO     | all workflow threads have been joined
[2025-07-28 01:08:53] 2025-07-28 05:08:40,844 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:08:53] 2025-07-28 05:08:40,844 | INFO     | traces error code: 0
[2025-07-28 01:08:53] 2025-07-28 05:08:40,844 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:08:53] 2025-07-28 05:08:53,472 | INFO     | PID=1871913 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:08:53] 2025-07-28 05:08:53,473 | INFO     | .. there are 11 such processes running
[2025-07-28 01:08:53] 2025-07-28 05:08:53,474 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:08:53] 2025-07-28 05:08:53,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:08:53] 2025-07-28 05:08:53,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:08:53] 2025-07-28 05:08:53,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:08:53] 2025-07-28 05:08:53,474 | INFO     | [monitor] control thread has ended
[2025-07-28 01:08:53] 2025-07-28 05:08:53,644 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:08:53] 2025-07-28 05:08:53,648 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:08:53] 2025-07-28 05:08:53,652 [wrapper] pilotpid: 1871913
[2025-07-28 01:08:53] 2025-07-28 05:08:53,656 [wrapper] Pilot exit status: 0
[2025-07-28 01:08:53] 2025-07-28 05:08:53,671 [wrapper] pandaids: 6748128458
[2025-07-28 01:08:53] 2025-07-28 05:08:53,751 [wrapper] cleanup supervisor_pilot 2184883 1871914
[2025-07-28 01:08:53] 2025-07-28 05:08:53,754 [wrapper] Test setup, not cleaning
[2025-07-28 01:08:53] 2025-07-28 05:08:53,758 [wrapper] apfmon messages muted
[2025-07-28 01:08:53] 2025-07-28 05:08:53,762 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:08:53] 2025-07-28 05:08:53,766 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:08:53]  *** Error codes and diagnostics ***
[2025-07-28 01:08:53]     "exeErrorCode": 0,
[2025-07-28 01:08:53]     "exeErrorDiag": "",
[2025-07-28 01:08:53]     "pilotErrorCode": 0,
[2025-07-28 01:08:53]     "pilotErrorDiag": "",
[2025-07-28 01:08:53]  *** Listing of results directory ***
[2025-07-28 01:08:53] total 408892
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:58 pilot3.tar.gz
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 17:08 queuedata.json
[2025-07-28 01:08:53] -rwx------. 1 boincer umatlas     36292 Jul 27 17:08 runpilot2-wrapper.sh
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:08:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:42 run_atlas
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:42 job.xml
[2025-07-28 01:08:53] -rw-r--r--. 2 boincer umatlas 241343025 Jul 27 23:42 EVNT.45758414._000005.pool.root.1
[2025-07-28 01:08:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:42 start_atlas.sh
[2025-07-28 01:08:53] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:42 shared
[2025-07-28 01:08:53] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 23:42 input.tar.gz
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:42 boinc_lockfile
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 23:42 pandaJob.out
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas    980117 Jul 27 23:42 agis_schedconf.cvmfs.json
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:42 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:08:53] drwx------. 4 boincer umatlas      4096 Jul 27 23:42 pilot3
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas      6843 Jul 28 01:03 init_data.xml
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas       529 Jul 28 01:07 boinc_task_state.xml
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas 171767504 Jul 28 01:07 HITS.45758416._000126.pool.root.1
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas      1036 Jul 28 01:08 memory_monitor_summary.json
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas    362249 Jul 28 01:08 log.45758416._000126.job.log.tgz.1
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas      7826 Jul 28 01:08 heartbeat.json
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas        27 Jul 28 01:08 wrapper_checkpoint.txt
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 01:08 boinc_mmap_file
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas       823 Jul 28 01:08 pilotlog.txt
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas        95 Jul 28 01:08 pilot_heartbeat.json
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas    496562 Jul 28 01:08 log.45758416._000126.job.log.1
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas       357 Jul 28 01:08 output.list
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas       620 Jul 28 01:08 runtime_log
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas    880640 Jul 28 01:08 result.tar.gz
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas       655 Jul 28 01:08 wZfKDm9mN07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzSWLDmDeTVEm.diag
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 01:08 runtime_log.err
[2025-07-28 01:08:53] -rw-r--r--. 1 boincer umatlas     22001 Jul 28 01:08 stderr.txt
[2025-07-28 01:08:53] HITS file was successfully produced:
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas 171767504 Jul 28 01:07 shared/HITS.pool.root.1
[2025-07-28 01:08:53]  *** Contents of shared directory: ***
[2025-07-28 01:08:53] total 404844
[2025-07-28 01:08:53] -rw-r--r--. 2 boincer umatlas 241343025 Jul 27 23:42 ATLAS.root_0
[2025-07-28 01:08:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:42 start_atlas.sh
[2025-07-28 01:08:53] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 23:42 input.tar.gz
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas 171767504 Jul 28 01:07 HITS.pool.root.1
[2025-07-28 01:08:53] -rw-------. 1 boincer umatlas    880640 Jul 28 01:08 result.tar.gz
01:08:55 (1868272): run_atlas exited; CPU time 54460.894425
01:08:55 (1868272): called boinc_finish(0)

</stderr_txt>
]]>

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