Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:23:12 (3017292): wrapper (7.7.26015): starting
22:23:12 (3017292): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 22:23:12] Arguments: --nthreads 8
[2025-07-27 22:23:12] Threads: 8
[2025-07-27 22:23:12] Checking for CVMFS
[2025-07-27 22:23:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:23:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:23:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:23:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:23:12] 2.13.1.0 5036 14818 261928 148832 3 196 35874881 40960000 10234 16776704 0 80228461 99.780 68362307 33635 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:23:12] CVMFS is ok
[2025-07-27 22:23:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:23:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:23:12] Further information can be found at the LHC@home message board.
[2025-07-27 22:23:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:23:12] Checking for apptainer binary...
[2025-07-27 22:23:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:23:12] Running /usr/bin/apptainer --version
[2025-07-27 22:23:12] apptainer version 1.4.1-1.el9
[2025-07-27 22:23:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:23:12] c-212-2.aglt2.org
[2025-07-27 22:23:12] apptainer works
[2025-07-27 22:23:12] Set ATHENA_PROC_NUMBER=8
[2025-07-27 22:23:12] Set ATHENA_CORE_NUMBER=8
[2025-07-27 22:23:12] Starting ATLAS job with PandaID=6748122109
[2025-07-27 22:23:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:53:15]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:53:15]  mtime=0
[2025-07-27 23:53:15]  protocol_id=None
[2025-07-27 23:53:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:53:15]  replicas=None
[2025-07-27 23:53:15]  scope=mc23_13p6TeV
[2025-07-27 23:53:15]  status=None
[2025-07-27 23:53:15]  status_code=0
[2025-07-27 23:53:15]  storage_token=
[2025-07-27 23:53:15]  surl=/tmp/boinchome/slots/6/PanDA_Pilot-6748122109/log.45758961._000087.job.log.tgz.1
[2025-07-27 23:53:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/48/log.45758961._000087.job.log.tgz.1
[2025-07-27 23:53:15]  workdir=None
[2025-07-27 23:53:15] ]
[2025-07-27 23:53:15] 2025-07-28 03:52:35,293 | INFO     | transferring file log.45758961._000087.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-6748122109/log.45758961._000087.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 23:53:15] 2025-07-28 03:52:35,293 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6748122109/log.45758961._000087.job.log.tgz.1 /tmp/boinchome/slots/6/log.45758961._000087.job
[2025-07-27 23:53:15] 2025-07-28 03:52:35,315 | INFO     | adding to output.list: log.45758961._000087.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/48/log.45758961._000087.job.log.tg
[2025-07-27 23:53:15] 2025-07-28 03:52:35,315 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:53:15] 2025-07-28 03:52:35,315 | INFO     | summary of transferred files:
[2025-07-27 23:53:15] 2025-07-28 03:52:35,316 | INFO     |  -- lfn=log.45758961._000087.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:53:15] 2025-07-28 03:52:35,316 | INFO     | stage-out finished correctly
[2025-07-27 23:53:15] 2025-07-28 03:52:36,049 | INFO     | monitor loop #393: job 0:6748122109 is in state 'finished'
[2025-07-27 23:53:15] 2025-07-28 03:52:36,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:53:15] 2025-07-28 03:52:36,880 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:53:15] 2025-07-28 03:52:38,552 | INFO     | monitor loop #394: job 0:6748122109 is in state 'finished'
[2025-07-27 23:53:15] 2025-07-28 03:52:38,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:53:15] 2025-07-28 03:52:38,749 | INFO     | job 6748122109 has state=finished
[2025-07-27 23:53:15] 2025-07-28 03:52:38,749 | INFO     | preparing for final server update for job 6748122109 in state='finished'
[2025-07-27 23:53:15] 2025-07-28 03:52:38,750 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:53:15] 2025-07-28 03:52:38,750 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:53:15] 2025-07-28 03:52:38,750 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:53:15] 2025-07-28 03:52:38,750 | INFO     | job 6748122109 has finished - writing final server update
[2025-07-27 23:53:15] 2025-07-28 03:52:38,750 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:53:15] 2025-07-28 03:52:38,752 | INFO     | executing command: lscpu
[2025-07-27 23:53:15] 2025-07-28 03:52:38,813 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:53:15] 2025-07-28 03:52:41,055 | INFO     | monitor loop #395: job 0:6748122109 is in state 'finished'
[2025-07-27 23:53:15] 2025-07-28 03:52:41,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:53:15] 2025-07-28 03:52:43,518 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 23:53:15] 2025-07-28 03:52:43,524 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3293.809791666667
[2025-07-27 23:53:15] 2025-07-28 03:52:43,538 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6748122109/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:53:15] 2025-07-28 03:52:43,539 | INFO     | extracted standard info from prmon json
[2025-07-27 23:53:15] 2025-07-28 03:52:43,540 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:53:15] 2025-07-28 03:52:43,540 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:53:15] 2025-07-28 03:52:43,540 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:53:15] 2025-07-28 03:52:43,540 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:53:15] 2025-07-28 03:52:43,542 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:53:15] 2025-07-28 03:52:43,542 | INFO     | sum of square deviations: 164765880.0
[2025-07-27 23:53:15] 2025-07-28 03:52:43,543 | INFO     | sum of deviations: -3315986718.0
[2025-07-27 23:53:15] 2025-07-28 03:52:43,543 | INFO     | mean x: 1753672174.0
[2025-07-27 23:53:15] 2025-07-28 03:52:43,543 | INFO     | mean y: 2556316.4320987654
[2025-07-27 23:53:15] 2025-07-28 03:52:43,543 | INFO     | -- intersect: 35295989864.14346
[2025-07-27 23:53:15] 2025-07-28 03:52:43,543 | INFO     | intersect: 35295989864.14346
[2025-07-27 23:53:15] 2025-07-28 03:52:43,543 | INFO     | chi2: 0.002450623241473818
[2025-07-27 23:53:15] 2025-07-28 03:52:43,543 | INFO     | -- intersect: 35295989864.14346
[2025-07-27 23:53:15] 2025-07-28 03:52:43,543 | INFO     | current memory leak: -20.13 B/s (using 81 data points, chi2=0.00)
[2025-07-27 23:53:15] 2025-07-28 03:52:43,544 | INFO     | could have reported an average CPU frequency of 3298 MHz (6 samples)
[2025-07-27 23:53:15] 2025-07-28 03:52:43,545 | INFO     | ..............................
[2025-07-27 23:53:15] 2025-07-28 03:52:43,545 | INFO     | . Timing measurements:
[2025-07-27 23:53:15] 2025-07-28 03:52:43,545 | INFO     | . get job = 0 s
[2025-07-27 23:53:15] 2025-07-28 03:52:43,545 | INFO     | . initial setup = 2 s
[2025-07-27 23:53:15] 2025-07-28 03:52:43,545 | INFO     | . payload setup = 5 s
[2025-07-27 23:53:15] 2025-07-28 03:52:43,545 | INFO     | . stage-in = 0 s
[2025-07-27 23:53:15] 2025-07-28 03:52:43,545 | INFO     | . payload execution = 5326 s
[2025-07-27 23:53:15] 2025-07-28 03:52:43,546 | INFO     | . stage-out = 0 s
[2025-07-27 23:53:15] 2025-07-28 03:52:43,546 | INFO     | . log creation = 0 s
[2025-07-27 23:53:15] 2025-07-28 03:52:43,546 | INFO     | ..............................
[2025-07-27 23:53:15] 2025-07-28 03:52:43,625 | INFO     | 
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | job summary report
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | --------------------------------------------------
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | PanDA job id: 6748122109
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | task id: 45758961
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | errors: (none)
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | pilot state: finished 
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | transexitcode: 0
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | exeerrorcode: 0
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | exeerrordiag: 
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | exitcode: 0
[2025-07-27 23:53:15] 2025-07-28 03:52:43,627 | INFO     | exitmsg: OK
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | cpuconsumptiontime: 39635 s
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | nevents: 400
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | neventsw: 0
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | pid: 3027594
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | pgrp: 3027594
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | corecount: 8
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | event service: False
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | sizes: {0: 2397324, 1: 2397523, 5: 2397785, 11: 2397841, 5335: 2424258, 5336: 2433256, 5338: 2433440, 5345: 2433634}
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | --------------------------------------------------
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | 
[2025-07-27 23:53:15] 2025-07-28 03:52:43,628 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-07-27 23:53:15] 2025-07-28 03:52:43,659 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,660 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,660 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,660 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,660 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,660 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,660 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,660 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,661 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:53:15] 2025-07-28 03:52:43,662 | INFO     | job 6748122109 has completed (purged errors)
[2025-07-27 23:53:15] 2025-07-28 03:52:43,662 | INFO     | overall cleanup function is called
[2025-07-27 23:53:15] 2025-07-28 03:52:44,670 | INFO     | --- collectZombieJob: --- 10, [3027594]
[2025-07-27 23:53:15] 2025-07-28 03:52:44,670 | INFO     | zombie collector waiting for pid 3027594
[2025-07-27 23:53:15] 2025-07-28 03:52:44,671 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:53:15] 2025-07-28 03:52:44,671 | INFO     | collected zombie processes
[2025-07-27 23:53:15] 2025-07-28 03:52:44,672 | INFO     | will attempt to kill all subprocesses of pid=3027594
[2025-07-27 23:53:15] 2025-07-28 03:52:45,048 | INFO     | process IDs to be killed: [3027594] (in reverse order)
[2025-07-27 23:53:15] 2025-07-28 03:52:45,172 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:53:15] 2025-07-28 03:52:45,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:53:15] 2025-07-28 03:52:45,187 | INFO     | did not find any defunct processes belonging to 3027594
[2025-07-27 23:53:15] 2025-07-28 03:52:45,198 | INFO     | did not find any defunct processes belonging to 3027594
[2025-07-27 23:53:15] 2025-07-28 03:52:45,198 | INFO     | ready for new job
[2025-07-27 23:53:15] 2025-07-28 03:52:45,199 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:53:15] 2025-07-28 03:52:45,200 | INFO     | ***************************************
[2025-07-27 23:53:15] 2025-07-28 03:52:45,201 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:53:15] 2025-07-28 03:52:45,201 | INFO     | ***************************************
[2025-07-27 23:53:15] 2025-07-28 03:52:45,201 | INFO     | 
[2025-07-27 23:53:15] 2025-07-28 03:52:45,206 | INFO     | architecture information:
[2025-07-27 23:53:15] 2025-07-28 03:52:45,206 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:53:15] 2025-07-28 03:52:45,229 | INFO     | cat /etc/os-release:
[2025-07-27 23:53:15] NAME="CentOS Linux"
[2025-07-27 23:53:15] VERSION="7 (Core)"
[2025-07-27 23:53:15] ID="centos"
[2025-07-27 23:53:15] ID_LIKE="rhel fedora"
[2025-07-27 23:53:15] VERSION_ID="7"
[2025-07-27 23:53:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:53:15] ANSI_COLOR="0;31"
[2025-07-27 23:53:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:53:15] HOME_URL="https://www.centos.org/"
[2025-07-27 23:53:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:53:15] 
[2025-07-27 23:53:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:53:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:53:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:53:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:53:15] 
[2025-07-27 23:53:15] 2025-07-28 03:52:45,230 | INFO     | ***************************************
[2025-07-27 23:53:15] 2025-07-28 03:52:45,731 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-07-27 23:53:15] 2025-07-28 03:52:45,748 | INFO     | sufficient remaining disk space (124085338112 B)
[2025-07-27 23:53:15] 2025-07-28 03:52:45,748 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:53:15] 2025-07-28 03:52:45,748 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:53:15] 2025-07-28 03:52:45,748 | INFO     | update_server=False
[2025-07-27 23:53:15] 2025-07-28 03:52:45,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:53:15] 2025-07-28 03:52:45,911 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:53:15] 2025-07-28 03:52:46,066 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 23:53:15] 2025-07-28 03:52:46,067 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 23:53:15] 2025-07-28 03:52:46,067 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:53:15] 2025-07-28 03:52:46,067 | INFO     | will abort loop
[2025-07-27 23:53:15] 2025-07-28 03:52:46,299 | INFO     | all data control threads have been joined
[2025-07-27 23:53:15] 2025-07-28 03:52:46,302 | INFO     | all job control threads have been joined
[2025-07-27 23:53:15] 2025-07-28 03:52:46,699 | INFO     | all payload control threads have been joined
[2025-07-27 23:53:15] 2025-07-28 03:52:46,753 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,001 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,037 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,072 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,304 | INFO     | [data] control thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,307 | INFO     | [job] control thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,472 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:53:15] 2025-07-28 03:52:47,528 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,611 | INFO     | [job] validate thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,622 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,704 | INFO     | [payload] control thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,912 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:47,917 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:48,088 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:48,128 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:48,635 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:53:15] 2025-07-28 03:52:49,640 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:51,477 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:53:15] 2025-07-28 03:52:52,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139748551214912)>', '<ExcThread(monitor, started 139748194625280)>']
[2025-07-27 23:53:15] 2025-07-28 03:52:57,199 | INFO     | all workflow threads have been joined
[2025-07-27 23:53:15] 2025-07-28 03:52:57,199 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:53:15] 2025-07-28 03:52:57,199 | INFO     | traces error code: 0
[2025-07-27 23:53:15] 2025-07-28 03:52:57,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:53:15] 2025-07-28 03:53:15,436 | INFO     | PID=3020883 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 23:53:15] 2025-07-28 03:53:15,436 | INFO     | .. there are 13 such processes running
[2025-07-27 23:53:15] 2025-07-28 03:53:15,437 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:53:15] 2025-07-28 03:53:15,437 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:53:15] 2025-07-28 03:53:15,437 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:53:15] 2025-07-28 03:53:15,437 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:53:15] 2025-07-28 03:53:15,437 | INFO     | [monitor] control thread has ended
[2025-07-27 23:53:15] 2025-07-28 03:53:15,534 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:53:15] 2025-07-28 03:53:15,539 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:53:15] 2025-07-28 03:53:15,542 [wrapper] pilotpid: 3020883
[2025-07-27 23:53:15] 2025-07-28 03:53:15,545 [wrapper] Pilot exit status: 0
[2025-07-27 23:53:15] 2025-07-28 03:53:15,559 [wrapper] pandaids: 6748122109
[2025-07-27 23:53:15] 2025-07-28 03:53:15,642 [wrapper] cleanup supervisor_pilot 3331811 3020884
[2025-07-27 23:53:15] 2025-07-28 03:53:15,645 [wrapper] Test setup, not cleaning
[2025-07-27 23:53:15] 2025-07-28 03:53:15,649 [wrapper] apfmon messages muted
[2025-07-27 23:53:15] 2025-07-28 03:53:15,653 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:53:15] 2025-07-28 03:53:15,657 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:53:15]  *** Error codes and diagnostics ***
[2025-07-27 23:53:15]     "exeErrorCode": 0,
[2025-07-27 23:53:15]     "exeErrorDiag": "",
[2025-07-27 23:53:15]     "pilotErrorCode": 0,
[2025-07-27 23:53:15]     "pilotErrorDiag": "",
[2025-07-27 23:53:15]  *** Listing of results directory ***
[2025-07-27 23:53:15] total 407316
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:58 pilot3.tar.gz
[2025-07-27 23:53:15] -rwx------. 1 boincer umatlas     36292 Jul 27 17:07 runpilot2-wrapper.sh
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 17:07 queuedata.json
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:53:15] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:23 run_atlas
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:23 job.xml
[2025-07-27 23:53:15] -rw-r--r--. 2 boincer umatlas 237641278 Jul 27 22:23 EVNT.45758956._000004.pool.root.1
[2025-07-27 23:53:15] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:23 start_atlas.sh
[2025-07-27 23:53:15] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:23 shared
[2025-07-27 23:53:15] -rw-r--r--. 2 boincer umatlas    542905 Jul 27 22:23 input.tar.gz
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:23 boinc_lockfile
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas      2638 Jul 27 22:23 pandaJob.out
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas    980125 Jul 27 22:23 agis_schedconf.cvmfs.json
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:23 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:53:15] drwx------. 4 boincer umatlas      4096 Jul 27 22:23 pilot3
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas      6947 Jul 27 23:49 init_data.xml
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas 173910047 Jul 27 23:52 HITS.45758961._000087.pool.root.1
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas       529 Jul 27 23:52 boinc_task_state.xml
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas        95 Jul 27 23:52 pilot_heartbeat.json
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas      1024 Jul 27 23:52 memory_monitor_summary.json
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas    313121 Jul 27 23:52 log.45758961._000087.job.log.tgz.1
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas      7751 Jul 27 23:52 heartbeat.json
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas        27 Jul 27 23:53 wrapper_checkpoint.txt
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 23:53 boinc_mmap_file
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas       823 Jul 27 23:53 pilotlog.txt
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas    518283 Jul 27 23:53 log.45758961._000087.job.log.1
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas       357 Jul 27 23:53 output.list
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas       620 Jul 27 23:53 runtime_log
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas    849920 Jul 27 23:53 result.tar.gz
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 23:53 runtime_log.err
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas       650 Jul 27 23:53 ORDODmflN07n9Rq4apOajLDm4fhM0noT9bVof3QYDmn72KDmvpURmm.diag
[2025-07-27 23:53:15] -rw-r--r--. 1 boincer umatlas     21738 Jul 27 23:53 stderr.txt
[2025-07-27 23:53:15] HITS file was successfully produced:
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas 173910047 Jul 27 23:52 shared/HITS.pool.root.1
[2025-07-27 23:53:15]  *** Contents of shared directory: ***
[2025-07-27 23:53:15] total 403296
[2025-07-27 23:53:15] -rw-r--r--. 2 boincer umatlas 237641278 Jul 27 22:23 ATLAS.root_0
[2025-07-27 23:53:15] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:23 start_atlas.sh
[2025-07-27 23:53:15] -rw-r--r--. 2 boincer umatlas    542905 Jul 27 22:23 input.tar.gz
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas 173910047 Jul 27 23:52 HITS.pool.root.1
[2025-07-27 23:53:15] -rw-------. 1 boincer umatlas    849920 Jul 27 23:53 result.tar.gz
23:53:17 (3017292): run_atlas exited; CPU time 39763.145705
23:53:17 (3017292): called boinc_finish(0)

</stderr_txt>
]]>

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