Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:04:20 (3580370): wrapper (7.7.26015): starting
10:04:20 (3580370): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 10:04:20] Arguments: --nthreads 12
[2025-07-28 10:04:20] Threads: 12
[2025-07-28 10:04:20] Checking for CVMFS
[2025-07-28 10:04:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 10:04:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 10:04:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 10:04:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 10:04:20] 2.13.1.0 95439 9850 103032 148840 3 57 2733938 4097024 0 130560 0 8223109 99.991 365917 6536 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-07-28 10:04:20] CVMFS is ok
[2025-07-28 10:04:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 10:04:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 10:04:20] Further information can be found at the LHC@home message board.
[2025-07-28 10:04:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 10:04:20] Checking for apptainer binary...
[2025-07-28 10:04:20] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-07-28 10:04:20] apptainer is not installed, using version from CVMFS
[2025-07-28 10:04:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 10:04:21] pckelar5.cern.ch
[2025-07-28 10:04:21] apptainer works
[2025-07-28 10:04:21] Set ATHENA_PROC_NUMBER=12
[2025-07-28 10:04:21] Set ATHENA_CORE_NUMBER=12
[2025-07-28 10:04:21] Starting ATLAS job with PandaID=6748262247
[2025-07-28 10:04:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 11:28:41]  *** The last 200 lines of the pilot log: ***
[2025-07-28 11:28:41]  protocol_id=None
[2025-07-28 11:28:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 11:28:41]  replicas=None
[2025-07-28 11:28:41]  scope=mc23_13p6TeV
[2025-07-28 11:28:41]  status=None
[2025-07-28 11:28:41]  status_code=0
[2025-07-28 11:28:41]  storage_token=
[2025-07-28 11:28:41]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6748262247/log.45758367._000128.job.log.tgz.1
[2025-07-28 11:28:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/08/log.45758367._000128.job.log.tgz.1
[2025-07-28 11:28:41]  workdir=None
[2025-07-28 11:28:41] ]
[2025-07-28 11:28:41] 2025-07-28 09:28:13,277 | INFO     | transferring file log.45758367._000128.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6748262247/log.45758367._000128.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 11:28:41] 2025-07-28 09:28:13,278 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6748262247/log.45758367._000128.job.log.tgz.1 /var/lib/boinc/slots/0/log.45758367._000128.job
[2025-07-28 11:28:41] 2025-07-28 09:28:13,293 | INFO     | adding to output.list: log.45758367._000128.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/08/log.45758367._000128.job.log.tg
[2025-07-28 11:28:41] 2025-07-28 09:28:13,293 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 11:28:41] 2025-07-28 09:28:13,293 | INFO     | summary of transferred files:
[2025-07-28 11:28:41] 2025-07-28 09:28:13,293 | INFO     |  -- lfn=log.45758367._000128.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 11:28:41] 2025-07-28 09:28:13,294 | INFO     | stage-out finished correctly
[2025-07-28 11:28:41] 2025-07-28 09:28:14,448 | INFO     | monitor loop #376: job 0:6748262247 is in state 'finished'
[2025-07-28 11:28:41] 2025-07-28 09:28:14,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 11:28:41] 2025-07-28 09:28:16,253 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 11:28:41] 2025-07-28 09:28:16,951 | INFO     | monitor loop #377: job 0:6748262247 is in state 'finished'
[2025-07-28 11:28:41] 2025-07-28 09:28:16,951 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 11:28:41] 2025-07-28 09:28:18,868 | INFO     | job 6748262247 has state=finished
[2025-07-28 11:28:41] 2025-07-28 09:28:18,868 | INFO     | preparing for final server update for job 6748262247 in state='finished'
[2025-07-28 11:28:41] 2025-07-28 09:28:18,869 | INFO     | this job has now completed (state=finished)
[2025-07-28 11:28:41] 2025-07-28 09:28:18,869 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 11:28:41] 2025-07-28 09:28:18,869 | INFO     | log transfer has been attempted: DONE
[2025-07-28 11:28:41] 2025-07-28 09:28:18,869 | INFO     | job 6748262247 has finished - writing final server update
[2025-07-28 11:28:41] 2025-07-28 09:28:18,869 | INFO     | total number of processed events: 400 (read)
[2025-07-28 11:28:41] 2025-07-28 09:28:18,871 | INFO     | executing command: lscpu
[2025-07-28 11:28:41] 2025-07-28 09:28:18,890 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 11:28:41] 2025-07-28 09:28:19,454 | INFO     | monitor loop #378: job 0:6748262247 is in state 'finished'
[2025-07-28 11:28:41] 2025-07-28 09:28:19,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 11:28:41] 2025-07-28 09:28:21,957 | INFO     | monitor loop #379: job 0:6748262247 is in state 'finished'
[2025-07-28 11:28:41] 2025-07-28 09:28:21,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 11:28:41] 2025-07-28 09:28:22,074 | INFO     | PID=3584048 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 11:28:41] 2025-07-28 09:28:23,179 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 11:28:41] 2025-07-28 09:28:23,181 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2513.1829999999995
[2025-07-28 11:28:41] 2025-07-28 09:28:23,182 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6748262247/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 11:28:41] 2025-07-28 09:28:23,183 | INFO     | extracted standard info from prmon json
[2025-07-28 11:28:41] 2025-07-28 09:28:23,183 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 11:28:41] 2025-07-28 09:28:23,183 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 11:28:41] 2025-07-28 09:28:23,183 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 11:28:41] 2025-07-28 09:28:23,183 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 11:28:41] 2025-07-28 09:28:23,185 | INFO     | fitting pss+swap vs Time
[2025-07-28 11:28:41] 2025-07-28 09:28:23,185 | INFO     | sum of square deviations: 130793150.0
[2025-07-28 11:28:41] 2025-07-28 09:28:23,185 | INFO     | sum of deviations: -3817623450.9999995
[2025-07-28 11:28:41] 2025-07-28 09:28:23,185 | INFO     | mean x: 1753692452.0
[2025-07-28 11:28:41] 2025-07-28 09:28:23,185 | INFO     | mean y: 2790715.3733333335
[2025-07-28 11:28:41] 2025-07-28 09:28:23,186 | INFO     | -- intersect: 51190008322.69368
[2025-07-28 11:28:41] 2025-07-28 09:28:23,186 | INFO     | intersect: 51190008322.69368
[2025-07-28 11:28:41] 2025-07-28 09:28:23,186 | INFO     | chi2: 0.09054224437360457
[2025-07-28 11:28:41] 2025-07-28 09:28:23,186 | INFO     | -- intersect: 51190008322.69368
[2025-07-28 11:28:41] 2025-07-28 09:28:23,186 | INFO     | current memory leak: -29.19 B/s (using 75 data points, chi2=0.09)
[2025-07-28 11:28:41] 2025-07-28 09:28:23,186 | INFO     | could have reported an average CPU frequency of 2552 MHz (6 samples)
[2025-07-28 11:28:41] 2025-07-28 09:28:23,186 | INFO     | ..............................
[2025-07-28 11:28:41] 2025-07-28 09:28:23,186 | INFO     | . Timing measurements:
[2025-07-28 11:28:41] 2025-07-28 09:28:23,187 | INFO     | . get job = 0 s
[2025-07-28 11:28:41] 2025-07-28 09:28:23,187 | INFO     | . initial setup = 1 s
[2025-07-28 11:28:41] 2025-07-28 09:28:23,187 | INFO     | . payload setup = 5 s
[2025-07-28 11:28:41] 2025-07-28 09:28:23,187 | INFO     | . stage-in = 0 s
[2025-07-28 11:28:41] 2025-07-28 09:28:23,187 | INFO     | . payload execution = 5000 s
[2025-07-28 11:28:41] 2025-07-28 09:28:23,187 | INFO     | . stage-out = 0 s
[2025-07-28 11:28:41] 2025-07-28 09:28:23,187 | INFO     | . log creation = 0 s
[2025-07-28 11:28:41] 2025-07-28 09:28:23,187 | INFO     | ..............................
[2025-07-28 11:28:41] 2025-07-28 09:28:23,255 | INFO     | 
[2025-07-28 11:28:41] 2025-07-28 09:28:23,255 | INFO     | job summary report
[2025-07-28 11:28:41] 2025-07-28 09:28:23,255 | INFO     | --------------------------------------------------
[2025-07-28 11:28:41] 2025-07-28 09:28:23,255 | INFO     | PanDA job id: 6748262247
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | task id: 45758367
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | errors: (none)
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | pilot state: finished 
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | transexitcode: 0
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | exeerrorcode: 0
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | exeerrordiag: 
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | exitcode: 0
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | exitmsg: OK
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | cpuconsumptiontime: 56137 s
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | nevents: 400
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | neventsw: 0
[2025-07-28 11:28:41] 2025-07-28 09:28:23,256 | INFO     | pid: 3591156
[2025-07-28 11:28:41] 2025-07-28 09:28:23,257 | INFO     | pgrp: 3591156
[2025-07-28 11:28:41] 2025-07-28 09:28:23,257 | INFO     | corecount: 12
[2025-07-28 11:28:41] 2025-07-28 09:28:23,257 | INFO     | event service: False
[2025-07-28 11:28:41] 2025-07-28 09:28:23,257 | INFO     | sizes: {0: 2397424, 3: 2397686, 11: 2397714, 5010: 2424038, 5011: 2424037, 5012: 2433091, 5015: 2433275, 5022: 2433469}
[2025-07-28 11:28:41] 2025-07-28 09:28:23,257 | INFO     | --------------------------------------------------
[2025-07-28 11:28:41] 2025-07-28 09:28:23,257 | INFO     | 
[2025-07-28 11:28:41] 2025-07-28 09:28:23,257 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-28 11:28:41] 2025-07-28 09:28:23,276 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,276 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,276 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,276 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,276 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,276 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,276 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,276 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,276 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,277 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 11:28:41] 2025-07-28 09:28:23,278 | INFO     | job 6748262247 has completed (purged errors)
[2025-07-28 11:28:41] 2025-07-28 09:28:23,278 | INFO     | overall cleanup function is called
[2025-07-28 11:28:41] 2025-07-28 09:28:24,285 | INFO     | --- collectZombieJob: --- 10, [3591156]
[2025-07-28 11:28:41] 2025-07-28 09:28:24,285 | INFO     | zombie collector waiting for pid 3591156
[2025-07-28 11:28:41] 2025-07-28 09:28:24,285 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 11:28:41] 2025-07-28 09:28:24,285 | INFO     | collected zombie processes
[2025-07-28 11:28:41] 2025-07-28 09:28:24,285 | INFO     | will attempt to kill all subprocesses of pid=3591156
[2025-07-28 11:28:41] 2025-07-28 09:28:24,359 | INFO     | process IDs to be killed: [3591156] (in reverse order)
[2025-07-28 11:28:41] 2025-07-28 09:28:24,394 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 11:28:41] 2025-07-28 09:28:24,394 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 11:28:41] 2025-07-28 09:28:24,396 | INFO     | did not find any defunct processes belonging to 3591156
[2025-07-28 11:28:41] 2025-07-28 09:28:24,398 | INFO     | did not find any defunct processes belonging to 3591156
[2025-07-28 11:28:41] 2025-07-28 09:28:24,399 | INFO     | ready for new job
[2025-07-28 11:28:41] 2025-07-28 09:28:24,399 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 11:28:41] 2025-07-28 09:28:24,400 | INFO     | ***************************************
[2025-07-28 11:28:41] 2025-07-28 09:28:24,400 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 11:28:41] 2025-07-28 09:28:24,400 | INFO     | ***************************************
[2025-07-28 11:28:41] 2025-07-28 09:28:24,400 | INFO     | 
[2025-07-28 11:28:41] 2025-07-28 09:28:24,401 | INFO     | architecture information:
[2025-07-28 11:28:41] 2025-07-28 09:28:24,401 | INFO     | executing command: cat /etc/os-release
[2025-07-28 11:28:41] 2025-07-28 09:28:24,410 | INFO     | cat /etc/os-release:
[2025-07-28 11:28:41] NAME="CentOS Linux"
[2025-07-28 11:28:41] VERSION="7 (Core)"
[2025-07-28 11:28:41] ID="centos"
[2025-07-28 11:28:41] ID_LIKE="rhel fedora"
[2025-07-28 11:28:41] VERSION_ID="7"
[2025-07-28 11:28:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 11:28:41] ANSI_COLOR="0;31"
[2025-07-28 11:28:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 11:28:41] HOME_URL="https://www.centos.org/"
[2025-07-28 11:28:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 11:28:41] 
[2025-07-28 11:28:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 11:28:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 11:28:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 11:28:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 11:28:41] 
[2025-07-28 11:28:41] 2025-07-28 09:28:24,410 | INFO     | ***************************************
[2025-07-28 11:28:41] 2025-07-28 09:28:24,913 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-28 11:28:41] 2025-07-28 09:28:24,927 | INFO     | sufficient remaining disk space (1818032603136 B)
[2025-07-28 11:28:41] 2025-07-28 09:28:24,927 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 11:28:41] 2025-07-28 09:28:24,927 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 11:28:41] 2025-07-28 09:28:24,927 | INFO     | update_server=False
[2025-07-28 11:28:41] 2025-07-28 09:28:24,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 11:28:41] 2025-07-28 09:28:24,927 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-28 11:28:41] 2025-07-28 09:28:24,928 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 11:28:41] 2025-07-28 09:28:24,928 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 11:28:41] 2025-07-28 09:28:24,928 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 11:28:41] 2025-07-28 09:28:24,928 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 11:28:41] 2025-07-28 09:28:25,058 | INFO     | all job control threads have been joined
[2025-07-28 11:28:41] 2025-07-28 09:28:25,465 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 11:28:41] 2025-07-28 09:28:25,465 | INFO     | aborting loop
[2025-07-28 11:28:41] 2025-07-28 09:28:25,650 | INFO     | all payload control threads have been joined
[2025-07-28 11:28:41] 2025-07-28 09:28:25,857 | INFO     | all data control threads have been joined
[2025-07-28 11:28:41] 2025-07-28 09:28:25,933 | INFO     | [job] retrieve thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:25,934 | INFO     | [job] queue monitor thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:26,042 | INFO     | [data] copytool_in thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:26,064 | INFO     | [job] control thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:26,064 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:26,156 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:26,376 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 11:28:41] 2025-07-28 09:28:26,470 | INFO     | [job] job monitor thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:26,655 | INFO     | [payload] control thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:26,765 | INFO     | [payload] failed_post thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:26,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 11:28:41] 2025-07-28 09:28:26,862 | INFO     | [data] control thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:27,105 | INFO     | [job] validate thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:27,290 | INFO     | [payload] validate_post thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:27,333 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:28,382 | INFO     | [data] copytool_out thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:30,834 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:35,469 | INFO     | job.realtimelogging is not enabled
[2025-07-28 11:28:41] 2025-07-28 09:28:36,474 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 11:28:41] 2025-07-28 09:28:36,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781368436544)>', '<ExcThread(monitor, started 139780239124224)>']
[2025-07-28 11:28:41] 2025-07-28 09:28:36,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 11:28:41] 2025-07-28 09:28:36,989 | INFO     | [monitor] control thread has ended
[2025-07-28 11:28:41] 2025-07-28 09:28:41,631 | INFO     | all workflow threads have been joined
[2025-07-28 11:28:41] 2025-07-28 09:28:41,631 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 11:28:41] 2025-07-28 09:28:41,631 | INFO     | traces error code: 0
[2025-07-28 11:28:41] 2025-07-28 09:28:41,631 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 11:28:41] 2025-07-28 09:28:41,706 [wrapper] ==== pilot stdout END ====
[2025-07-28 11:28:41] 2025-07-28 09:28:41,708 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 11:28:41] 2025-07-28 09:28:41,711 [wrapper] pilotpid: 3584048
[2025-07-28 11:28:41] 2025-07-28 09:28:41,713 [wrapper] Pilot exit status: 0
[2025-07-28 11:28:41] 2025-07-28 09:28:41,721 [wrapper] pandaids: 6748262247
[2025-07-28 11:28:41] 2025-07-28 09:28:41,740 [wrapper] cleanup supervisor_pilot 3606976 3584049
[2025-07-28 11:28:41] 2025-07-28 09:28:41,742 [wrapper] Test setup, not cleaning
[2025-07-28 11:28:41] 2025-07-28 09:28:41,744 [wrapper] apfmon messages muted
[2025-07-28 11:28:41] 2025-07-28 09:28:41,746 [wrapper] ==== wrapper stdout END ====
[2025-07-28 11:28:41] 2025-07-28 09:28:41,748 [wrapper] ==== wrapper stderr END ====
[2025-07-28 11:28:41]  *** Error codes and diagnostics ***
[2025-07-28 11:28:41]     "exeErrorCode": 0,
[2025-07-28 11:28:41]     "exeErrorDiag": "",
[2025-07-28 11:28:41]     "pilotErrorCode": 0,
[2025-07-28 11:28:41]     "pilotErrorDiag": "",
[2025-07-28 11:28:41]  *** Listing of results directory ***
[2025-07-28 11:28:41] total 409804
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc    530466 Jul 27 22:58 pilot3.tar.gz
[2025-07-28 11:28:41] -rwx------ 1 boinc boinc     36292 Jul 27 23:15 runpilot2-wrapper.sh
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc      5112 Jul 27 23:15 queuedata.json
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc       100 Jul 28 10:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 11:28:41] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 10:04 run_atlas
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc       105 Jul 28 10:04 job.xml
[2025-07-28 11:28:41] -rw-r--r-- 2 boinc boinc 241621455 Jul 28 10:04 EVNT.45758364._000004.pool.root.1
[2025-07-28 11:28:41] -rw-r--r-- 2 boinc boinc     15095 Jul 28 10:04 start_atlas.sh
[2025-07-28 11:28:41] drwxrwx--x 2 boinc boinc        68 Jul 28 10:04 shared
[2025-07-28 11:28:41] -rw-r--r-- 2 boinc boinc    542897 Jul 28 10:04 input.tar.gz
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc      6294 Jul 28 10:04 init_data.xml
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc         0 Jul 28 10:04 boinc_lockfile
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc      2567 Jul 28 10:04 pandaJob.out
[2025-07-28 11:28:41] -rw------- 1 boinc boinc    978452 Jul 28 10:04 agis_schedconf.cvmfs.json
[2025-07-28 11:28:41] -rw------- 1 boinc boinc   1593052 Jul 28 10:04 agis_ddmendpoints.agis.ALL.json
[2025-07-28 11:28:41] drwx------ 4 boinc boinc      4096 Jul 28 10:04 pilot3
[2025-07-28 11:28:41] -rw------- 1 boinc boinc        95 Jul 28 11:27 pilot_heartbeat.json
[2025-07-28 11:28:41] -rw------- 1 boinc boinc 172470363 Jul 28 11:27 HITS.45758367._000128.pool.root.1
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc       529 Jul 28 11:27 boinc_task_state.xml
[2025-07-28 11:28:41] -rw------- 1 boinc boinc      1014 Jul 28 11:28 memory_monitor_summary.json
[2025-07-28 11:28:41] -rw------- 1 boinc boinc    360570 Jul 28 11:28 log.45758367._000128.job.log.tgz.1
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc        27 Jul 28 11:28 wrapper_checkpoint.txt
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc      8192 Jul 28 11:28 boinc_mmap_file
[2025-07-28 11:28:41] -rw------- 1 boinc boinc      7769 Jul 28 11:28 heartbeat.json
[2025-07-28 11:28:41] -rw------- 1 boinc boinc      4554 Jul 28 11:28 pilotlog.txt
[2025-07-28 11:28:41] -rw------- 1 boinc boinc    480343 Jul 28 11:28 log.45758367._000128.job.log.1
[2025-07-28 11:28:41] -rw------- 1 boinc boinc       357 Jul 28 11:28 output.list
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc       620 Jul 28 11:28 runtime_log
[2025-07-28 11:28:41] -rw------- 1 boinc boinc    860160 Jul 28 11:28 result.tar.gz
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc      8684 Jul 28 11:28 runtime_log.err
[2025-07-28 11:28:41] -rw------- 1 boinc boinc       656 Jul 28 11:28 0tXMDm0tN07n9Rq4apOajLDm4fhM0noT9bVof3QYDmN82KDmUiGiym.diag
[2025-07-28 11:28:41] -rw-r--r-- 1 boinc boinc     21977 Jul 28 11:28 stderr.txt
[2025-07-28 11:28:41] HITS file was successfully produced:
[2025-07-28 11:28:41] -rw------- 1 boinc boinc 172470363 Jul 28 11:27 shared/HITS.pool.root.1
[2025-07-28 11:28:41]  *** Contents of shared directory: ***
[2025-07-28 11:28:41] total 405780
[2025-07-28 11:28:41] -rw-r--r-- 2 boinc boinc 241621455 Jul 28 10:04 ATLAS.root_0
[2025-07-28 11:28:41] -rw-r--r-- 2 boinc boinc     15095 Jul 28 10:04 start_atlas.sh
[2025-07-28 11:28:41] -rw-r--r-- 2 boinc boinc    542897 Jul 28 10:04 input.tar.gz
[2025-07-28 11:28:41] -rw------- 1 boinc boinc 172470363 Jul 28 11:27 HITS.pool.root.1
[2025-07-28 11:28:41] -rw------- 1 boinc boinc    860160 Jul 28 11:28 result.tar.gz
11:28:43 (3580370): run_atlas exited; CPU time 56176.452923
11:28:43 (3580370): called boinc_finish(0)

</stderr_txt>
]]>

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