Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:37:28 (16848): wrapper (7.7.26015): starting
22:37:28 (16848): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 22:37:28] Arguments: --nthreads 12
[2025-07-27 22:37:28] Threads: 12
[2025-07-27 22:37:28] Checking for CVMFS
[2025-07-27 22:37:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:37:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:37:29] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:37:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:37:29] 2.11.2.0 2979 112865 89992 148832 3 59 15279513 20275201 1 130560 0 39215356 99.972 9642599 10499 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:37:29] CVMFS is ok
[2025-07-27 22:37:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:37:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:37:29] Further information can be found at the LHC@home message board.
[2025-07-27 22:37:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:37:29] Checking for apptainer binary...
[2025-07-27 22:37:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:37:29] Running /usr/bin/apptainer --version
[2025-07-27 22:37:29] apptainer version 1.3.2-1.el7
[2025-07-27 22:37:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:37:30] c-205-21.aglt2.org
[2025-07-27 22:37:30] apptainer works
[2025-07-27 22:37:30] Set ATHENA_PROC_NUMBER=12
[2025-07-27 22:37:30] Set ATHENA_CORE_NUMBER=12
[2025-07-27 22:37:30] Starting ATLAS job with PandaID=6748122110
[2025-07-27 22:37:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:16:03]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:16:03]  is_altstaged=None
[2025-07-28 00:16:03]  is_tar=False
[2025-07-28 00:16:03]  lfn=log.45758961._000088.job.log.tgz.1
[2025-07-28 00:16:03]  mtime=0
[2025-07-28 00:16:03]  protocol_id=None
[2025-07-28 00:16:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 00:16:03]  replicas=None
[2025-07-28 00:16:03]  scope=mc23_13p6TeV
[2025-07-28 00:16:03]  status=None
[2025-07-28 00:16:03]  status_code=0
[2025-07-28 00:16:03]  storage_token=
[2025-07-28 00:16:03]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748122110/log.45758961._000088.job.log.tgz.1
[2025-07-28 00:16:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/7b/log.45758961._000088.job.log.tgz.1
[2025-07-28 00:16:03]  workdir=None
[2025-07-28 00:16:03] ]
[2025-07-28 00:16:03] 2025-07-28 04:15:24,257 | INFO     | transferring file log.45758961._000088.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748122110/log.45758961._000088.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 00:16:03] 2025-07-28 04:15:24,257 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748122110/log.45758961._000088.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758961._000088.job
[2025-07-28 00:16:03] 2025-07-28 04:15:24,280 | INFO     | adding to output.list: log.45758961._000088.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/7b/log.45758961._000088.job.log.tg
[2025-07-28 00:16:03] 2025-07-28 04:15:24,281 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:16:03] 2025-07-28 04:15:24,281 | INFO     | summary of transferred files:
[2025-07-28 00:16:03] 2025-07-28 04:15:24,281 | INFO     |  -- lfn=log.45758961._000088.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:16:03] 2025-07-28 04:15:24,281 | INFO     | stage-out finished correctly
[2025-07-28 00:16:03] 2025-07-28 04:15:24,919 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:16:03] 2025-07-28 04:15:26,610 | INFO     | monitor loop #436: job 0:6748122110 is in state 'finished'
[2025-07-28 00:16:03] 2025-07-28 04:15:26,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:16:03] 2025-07-28 04:15:26,699 | INFO     | job 6748122110 has state=finished
[2025-07-28 00:16:03] 2025-07-28 04:15:26,699 | INFO     | preparing for final server update for job 6748122110 in state='finished'
[2025-07-28 00:16:03] 2025-07-28 04:15:26,700 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:16:03] 2025-07-28 04:15:26,700 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:16:03] 2025-07-28 04:15:26,700 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:16:03] 2025-07-28 04:15:26,700 | INFO     | job 6748122110 has finished - writing final server update
[2025-07-28 00:16:03] 2025-07-28 04:15:26,701 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:16:03] 2025-07-28 04:15:26,703 | INFO     | executing command: lscpu
[2025-07-28 00:16:03] 2025-07-28 04:15:26,731 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:16:03] 2025-07-28 04:15:28,680 | INFO     | PID=20438 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 00:16:03] 2025-07-28 04:15:29,113 | INFO     | monitor loop #437: job 0:6748122110 is in state 'finished'
[2025-07-28 00:16:03] 2025-07-28 04:15:29,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:16:03] 2025-07-28 04:15:31,416 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 00:16:03] 2025-07-28 04:15:31,419 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1762.3333333333333
[2025-07-28 00:16:03] 2025-07-28 04:15:31,421 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748122110/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:16:03] 2025-07-28 04:15:31,422 | INFO     | extracted standard info from prmon json
[2025-07-28 00:16:03] 2025-07-28 04:15:31,422 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:16:03] 2025-07-28 04:15:31,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:16:03] 2025-07-28 04:15:31,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:16:03] 2025-07-28 04:15:31,422 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:16:03] 2025-07-28 04:15:31,424 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:16:03] 2025-07-28 04:15:31,424 | INFO     | sum of square deviations: 218571540.0
[2025-07-28 00:16:03] 2025-07-28 04:15:31,425 | INFO     | sum of deviations: -11564670055.0
[2025-07-28 00:16:03] 2025-07-28 04:15:31,425 | INFO     | mean x: 1753673284.0
[2025-07-28 00:16:03] 2025-07-28 04:15:31,425 | INFO     | mean y: 2778189.9438202246
[2025-07-28 00:16:03] 2025-07-28 04:15:31,425 | INFO     | -- intersect: 92790031799.12053
[2025-07-28 00:16:03] 2025-07-28 04:15:31,425 | INFO     | intersect: 92790031799.12053
[2025-07-28 00:16:03] 2025-07-28 04:15:31,425 | INFO     | chi2: 0.13906837630344948
[2025-07-28 00:16:03] 2025-07-28 04:15:31,425 | INFO     | -- intersect: 92790031799.12053
[2025-07-28 00:16:03] 2025-07-28 04:15:31,426 | INFO     | current memory leak: -52.91 B/s (using 89 data points, chi2=0.14)
[2025-07-28 00:16:03] 2025-07-28 04:15:31,426 | INFO     | could have reported an average CPU frequency of 2149 MHz (7 samples)
[2025-07-28 00:16:03] 2025-07-28 04:15:31,426 | INFO     | ..............................
[2025-07-28 00:16:03] 2025-07-28 04:15:31,426 | INFO     | . Timing measurements:
[2025-07-28 00:16:03] 2025-07-28 04:15:31,426 | INFO     | . get job = 0 s
[2025-07-28 00:16:03] 2025-07-28 04:15:31,426 | INFO     | . initial setup = 2 s
[2025-07-28 00:16:03] 2025-07-28 04:15:31,426 | INFO     | . payload setup = 9 s
[2025-07-28 00:16:03] 2025-07-28 04:15:31,427 | INFO     | . stage-in = 0 s
[2025-07-28 00:16:03] 2025-07-28 04:15:31,427 | INFO     | . payload execution = 5828 s
[2025-07-28 00:16:03] 2025-07-28 04:15:31,427 | INFO     | . stage-out = 0 s
[2025-07-28 00:16:03] 2025-07-28 04:15:31,427 | INFO     | . log creation = 0 s
[2025-07-28 00:16:03] 2025-07-28 04:15:31,427 | INFO     | ..............................
[2025-07-28 00:16:03] 2025-07-28 04:15:31,511 | INFO     | 
[2025-07-28 00:16:03] 2025-07-28 04:15:31,512 | INFO     | job summary report
[2025-07-28 00:16:03] 2025-07-28 04:15:31,512 | INFO     | --------------------------------------------------
[2025-07-28 00:16:03] 2025-07-28 04:15:31,512 | INFO     | PanDA job id: 6748122110
[2025-07-28 00:16:03] 2025-07-28 04:15:31,512 | INFO     | task id: 45758961
[2025-07-28 00:16:03] 2025-07-28 04:15:31,512 | INFO     | errors: (none)
[2025-07-28 00:16:03] 2025-07-28 04:15:31,512 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:16:03] 2025-07-28 04:15:31,513 | INFO     | pilot state: finished 
[2025-07-28 00:16:03] 2025-07-28 04:15:31,513 | INFO     | transexitcode: 0
[2025-07-28 00:16:03] 2025-07-28 04:15:31,513 | INFO     | exeerrorcode: 0
[2025-07-28 00:16:03] 2025-07-28 04:15:31,513 | INFO     | exeerrordiag: 
[2025-07-28 00:16:03] 2025-07-28 04:15:31,513 | INFO     | exitcode: 0
[2025-07-28 00:16:03] 2025-07-28 04:15:31,513 | INFO     | exitmsg: OK
[2025-07-28 00:16:03] 2025-07-28 04:15:31,514 | INFO     | cpuconsumptiontime: 63840 s
[2025-07-28 00:16:03] 2025-07-28 04:15:31,514 | INFO     | nevents: 400
[2025-07-28 00:16:03] 2025-07-28 04:15:31,514 | INFO     | neventsw: 0
[2025-07-28 00:16:03] 2025-07-28 04:15:31,514 | INFO     | pid: 26898
[2025-07-28 00:16:03] 2025-07-28 04:15:31,514 | INFO     | pgrp: 26898
[2025-07-28 00:16:03] 2025-07-28 04:15:31,514 | INFO     | corecount: 12
[2025-07-28 00:16:03] 2025-07-28 04:15:31,515 | INFO     | event service: False
[2025-07-28 00:16:03] 2025-07-28 04:15:31,515 | INFO     | sizes: {0: 2397495, 5: 2397757, 11: 2397813, 5842: 2424484, 5843: 2433482, 5844: 2433538, 5851: 2433860}
[2025-07-28 00:16:03] 2025-07-28 04:15:31,515 | INFO     | --------------------------------------------------
[2025-07-28 00:16:03] 2025-07-28 04:15:31,515 | INFO     | 
[2025-07-28 00:16:03] 2025-07-28 04:15:31,515 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 00:16:03] 2025-07-28 04:15:31,540 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,540 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,541 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,541 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,541 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,541 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,541 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,541 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,542 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,542 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,542 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,542 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,542 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,542 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,543 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,543 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,543 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,543 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:16:03] 2025-07-28 04:15:31,543 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,543 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:16:03] 2025-07-28 04:15:31,544 | INFO     | job 6748122110 has completed (purged errors)
[2025-07-28 00:16:03] 2025-07-28 04:15:31,544 | INFO     | overall cleanup function is called
[2025-07-28 00:16:03] 2025-07-28 04:15:32,551 | INFO     | --- collectZombieJob: --- 10, [26898]
[2025-07-28 00:16:03] 2025-07-28 04:15:32,552 | INFO     | zombie collector waiting for pid 26898
[2025-07-28 00:16:03] 2025-07-28 04:15:32,552 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:16:03] 2025-07-28 04:15:32,552 | INFO     | collected zombie processes
[2025-07-28 00:16:03] 2025-07-28 04:15:32,552 | INFO     | will attempt to kill all subprocesses of pid=26898
[2025-07-28 00:16:03] 2025-07-28 04:15:32,641 | INFO     | process IDs to be killed: [26898] (in reverse order)
[2025-07-28 00:16:03] 2025-07-28 04:15:32,694 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:16:03] 2025-07-28 04:15:32,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:16:03] 2025-07-28 04:15:32,698 | INFO     | did not find any defunct processes belonging to 26898
[2025-07-28 00:16:03] 2025-07-28 04:15:32,701 | INFO     | did not find any defunct processes belonging to 26898
[2025-07-28 00:16:03] 2025-07-28 04:15:32,701 | INFO     | ready for new job
[2025-07-28 00:16:03] 2025-07-28 04:15:32,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:16:03] 2025-07-28 04:15:32,702 | INFO     | ***************************************
[2025-07-28 00:16:03] 2025-07-28 04:15:32,702 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:16:03] 2025-07-28 04:15:32,703 | INFO     | ***************************************
[2025-07-28 00:16:03] 2025-07-28 04:15:32,703 | INFO     | 
[2025-07-28 00:16:03] 2025-07-28 04:15:32,703 | INFO     | architecture information:
[2025-07-28 00:16:03] 2025-07-28 04:15:32,704 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:16:03] 2025-07-28 04:15:32,718 | INFO     | cat /etc/os-release:
[2025-07-28 00:16:03] NAME="CentOS Linux"
[2025-07-28 00:16:03] VERSION="7 (Core)"
[2025-07-28 00:16:03] ID="centos"
[2025-07-28 00:16:03] ID_LIKE="rhel fedora"
[2025-07-28 00:16:03] VERSION_ID="7"
[2025-07-28 00:16:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:16:03] ANSI_COLOR="0;31"
[2025-07-28 00:16:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:16:03] HOME_URL="https://www.centos.org/"
[2025-07-28 00:16:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:16:03] 
[2025-07-28 00:16:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:16:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:16:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:16:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:16:03] 
[2025-07-28 00:16:03] 2025-07-28 04:15:32,719 | INFO     | ***************************************
[2025-07-28 00:16:03] 2025-07-28 04:15:33,221 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 00:16:03] 2025-07-28 04:15:33,238 | INFO     | sufficient remaining disk space (29368516608 B)
[2025-07-28 00:16:03] 2025-07-28 04:15:33,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:16:03] 2025-07-28 04:15:33,239 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:16:03] 2025-07-28 04:15:33,239 | INFO     | update_server=False
[2025-07-28 00:16:03] 2025-07-28 04:15:33,239 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:16:03] 2025-07-28 04:15:33,239 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:16:03] 2025-07-28 04:15:33,239 | INFO     | aborting loop
[2025-07-28 00:16:03] 2025-07-28 04:15:33,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:16:03] 2025-07-28 04:15:33,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:16:03] 2025-07-28 04:15:34,005 | INFO     | all data control threads have been joined
[2025-07-28 00:16:03] 2025-07-28 04:15:34,244 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:34,244 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:34,245 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:34,276 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:34,278 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:34,441 | INFO     | all job control threads have been joined
[2025-07-28 00:16:03] 2025-07-28 04:15:34,513 | INFO     | all payload control threads have been joined
[2025-07-28 00:16:03] 2025-07-28 04:15:34,867 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:34,957 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:35,010 | INFO     | [data] control thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:35,246 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:35,270 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:35,446 | INFO     | [job] control thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:35,468 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:35,512 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:16:03] 2025-07-28 04:15:35,518 | INFO     | [payload] control thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:35,598 | INFO     | [job] validate thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:39,518 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:43,865 | INFO     | job.realtimelogging is not enabled
[2025-07-28 00:16:03] 2025-07-28 04:15:44,870 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:16:03] 2025-07-28 04:15:45,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140521371420480)>', '<ExcThread(monitor, started 140520609257216)>']
[2025-07-28 00:16:03] 2025-07-28 04:15:50,108 | INFO     | all workflow threads have been joined
[2025-07-28 00:16:03] 2025-07-28 04:15:50,108 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:16:03] 2025-07-28 04:15:50,108 | INFO     | traces error code: 0
[2025-07-28 00:16:03] 2025-07-28 04:15:50,108 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:16:03] 2025-07-28 04:16:02,878 | INFO     | PID=20438 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 00:16:03] 2025-07-28 04:16:02,879 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:16:03] 2025-07-28 04:16:02,879 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:16:03] 2025-07-28 04:16:02,879 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:16:03] 2025-07-28 04:16:02,879 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:16:03] 2025-07-28 04:16:02,879 | INFO     | [monitor] control thread has ended
[2025-07-28 00:16:03] 2025-07-28 04:16:02,966 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:16:03] 2025-07-28 04:16:02,970 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:16:03] 2025-07-28 04:16:02,974 [wrapper] pilotpid: 20438
[2025-07-28 00:16:03] 2025-07-28 04:16:02,978 [wrapper] Pilot exit status: 0
[2025-07-28 00:16:03] 2025-07-28 04:16:02,995 [wrapper] pandaids: 6748122110
[2025-07-28 00:16:03] 2025-07-28 04:16:03,037 [wrapper] cleanup supervisor_pilot   796 20439
[2025-07-28 00:16:03] 2025-07-28 04:16:03,041 [wrapper] Test setup, not cleaning
[2025-07-28 00:16:03] 2025-07-28 04:16:03,045 [wrapper] apfmon messages muted
[2025-07-28 00:16:03] 2025-07-28 04:16:03,049 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:16:03] 2025-07-28 04:16:03,053 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:16:03]  *** Error codes and diagnostics ***
[2025-07-28 00:16:03]     "exeErrorCode": 0,
[2025-07-28 00:16:03]     "exeErrorDiag": "",
[2025-07-28 00:16:03]     "pilotErrorCode": 0,
[2025-07-28 00:16:03]     "pilotErrorDiag": "",
[2025-07-28 00:16:03]  *** Listing of results directory ***
[2025-07-28 00:16:03] total 408608
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 16:58 pilot3.tar.gz
[2025-07-28 00:16:03] -rwx------ 1 boincer umatlas     36292 Jul 27 17:07 runpilot2-wrapper.sh
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 17:07 queuedata.json
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas       100 Jul 27 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:16:03] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 22:37 run_atlas
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas       105 Jul 27 22:37 job.xml
[2025-07-28 00:16:03] -rw-r--r-- 2 boincer umatlas 237641278 Jul 27 22:37 EVNT.45758956._000004.pool.root.1
[2025-07-28 00:16:03] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 22:37 start_atlas.sh
[2025-07-28 00:16:03] drwxrwx--x 2 boincer umatlas      4096 Jul 27 22:37 shared
[2025-07-28 00:16:03] -rw-r--r-- 2 boincer umatlas    542905 Jul 27 22:37 input.tar.gz
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas         0 Jul 27 22:37 boinc_lockfile
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas      2638 Jul 27 22:37 pandaJob.out
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas    980125 Jul 27 22:37 agis_schedconf.cvmfs.json
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas   1593052 Jul 27 22:37 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:16:03] drwx------ 4 boincer umatlas      4096 Jul 27 22:37 pilot3
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas      5867 Jul 28 00:10 init_data.xml
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas 175051385 Jul 28 00:14 HITS.45758961._000088.pool.root.1
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas       529 Jul 28 00:15 boinc_task_state.xml
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas      1049 Jul 28 00:15 memory_monitor_summary.json
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas    377009 Jul 28 00:15 log.45758961._000088.job.log.tgz.1
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas      7845 Jul 28 00:15 heartbeat.json
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 00:15 boinc_mmap_file
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas        27 Jul 28 00:15 wrapper_checkpoint.txt
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas       745 Jul 28 00:16 pilotlog.txt
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas        95 Jul 28 00:16 pilot_heartbeat.json
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas    547932 Jul 28 00:16 log.45758961._000088.job.log.1
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas       357 Jul 28 00:16 output.list
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas       620 Jul 28 00:16 runtime_log
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas    942080 Jul 28 00:16 result.tar.gz
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas      8662 Jul 28 00:16 runtime_log.err
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas       659 Jul 28 00:16 LvEODmflN07n9Rq4apOajLDm4fhM0noT9bVof3QYDmo72KDm476OQm.diag
[2025-07-28 00:16:03] -rw-r--r-- 1 boincer umatlas     21567 Jul 28 00:16 stderr.txt
[2025-07-28 00:16:03] HITS file was successfully produced:
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas 175051385 Jul 28 00:14 shared/HITS.pool.root.1
[2025-07-28 00:16:03]  *** Contents of shared directory: ***
[2025-07-28 00:16:03] total 404496
[2025-07-28 00:16:03] -rw-r--r-- 2 boincer umatlas 237641278 Jul 27 22:37 ATLAS.root_0
[2025-07-28 00:16:03] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 22:37 start_atlas.sh
[2025-07-28 00:16:03] -rw-r--r-- 2 boincer umatlas    542905 Jul 27 22:37 input.tar.gz
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas 175051385 Jul 28 00:14 HITS.pool.root.1
[2025-07-28 00:16:03] -rw------- 1 boincer umatlas    942080 Jul 28 00:16 result.tar.gz
00:16:05 (16848): run_atlas exited; CPU time 63814.500888
00:16:05 (16848): called boinc_finish(0)

</stderr_txt>
]]>

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