Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:50:33 (3128271): wrapper (7.7.26015): starting
22:50:33 (3128271): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 22:50:33] Arguments: --nthreads 8
[2025-07-27 22:50:33] Threads: 8
[2025-07-27 22:50:33] Checking for CVMFS
[2025-07-27 22:50:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:50:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:50:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:50:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:50:34] 2.13.1.0 5036 14845 262620 148832 0 196 35875034 40960000 10243 16776704 0 80489148 99.781 68362310 33635 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:50:34] CVMFS is ok
[2025-07-27 22:50:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:50:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:50:34] Further information can be found at the LHC@home message board.
[2025-07-27 22:50:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:50:34] Checking for apptainer binary...
[2025-07-27 22:50:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:50:34] Running /usr/bin/apptainer --version
[2025-07-27 22:50:34] apptainer version 1.4.1-1.el9
[2025-07-27 22:50:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:50:34] c-212-2.aglt2.org
[2025-07-27 22:50:34] apptainer works
[2025-07-27 22:50:34] Set ATHENA_PROC_NUMBER=8
[2025-07-27 22:50:34] Set ATHENA_CORE_NUMBER=8
[2025-07-27 22:50:34] Starting ATLAS job with PandaID=6748122055
[2025-07-27 22:50:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:21:44]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:21:44]  protocol_id=None
[2025-07-28 00:21:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 00:21:44]  replicas=None
[2025-07-28 00:21:44]  scope=mc23_13p6TeV
[2025-07-28 00:21:44]  status=None
[2025-07-28 00:21:44]  status_code=0
[2025-07-28 00:21:44]  storage_token=
[2025-07-28 00:21:44]  surl=/tmp/boinchome/slots/8/PanDA_Pilot-6748122055/log.45758961._000033.job.log.tgz.1
[2025-07-28 00:21:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/85/log.45758961._000033.job.log.tgz.1
[2025-07-28 00:21:44]  workdir=None
[2025-07-28 00:21:44] ]
[2025-07-28 00:21:44] 2025-07-28 04:21:05,848 | INFO     | transferring file log.45758961._000033.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6748122055/log.45758961._000033.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 00:21:44] 2025-07-28 04:21:05,848 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6748122055/log.45758961._000033.job.log.tgz.1 /tmp/boinchome/slots/8/log.45758961._000033.job
[2025-07-28 00:21:44] 2025-07-28 04:21:05,870 | INFO     | adding to output.list: log.45758961._000033.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/85/log.45758961._000033.job.log.tg
[2025-07-28 00:21:44] 2025-07-28 04:21:05,871 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:21:44] 2025-07-28 04:21:05,871 | INFO     | summary of transferred files:
[2025-07-28 00:21:44] 2025-07-28 04:21:05,871 | INFO     |  -- lfn=log.45758961._000033.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:21:44] 2025-07-28 04:21:05,871 | INFO     | stage-out finished correctly
[2025-07-28 00:21:44] 2025-07-28 04:21:05,951 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:21:44] 2025-07-28 04:21:07,039 | INFO     | monitor loop #398: job 0:6748122055 is in state 'finished'
[2025-07-28 00:21:44] 2025-07-28 04:21:07,040 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:21:44] 2025-07-28 04:21:08,282 | INFO     | job 6748122055 has state=finished
[2025-07-28 00:21:44] 2025-07-28 04:21:08,283 | INFO     | preparing for final server update for job 6748122055 in state='finished'
[2025-07-28 00:21:44] 2025-07-28 04:21:08,283 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:21:44] 2025-07-28 04:21:08,283 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:21:44] 2025-07-28 04:21:08,283 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:21:44] 2025-07-28 04:21:08,284 | INFO     | job 6748122055 has finished - writing final server update
[2025-07-28 00:21:44] 2025-07-28 04:21:08,284 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:21:44] 2025-07-28 04:21:08,285 | INFO     | executing command: lscpu
[2025-07-28 00:21:44] 2025-07-28 04:21:08,348 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:21:44] 2025-07-28 04:21:09,542 | INFO     | monitor loop #399: job 0:6748122055 is in state 'finished'
[2025-07-28 00:21:44] 2025-07-28 04:21:09,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:21:44] 2025-07-28 04:21:12,045 | INFO     | monitor loop #400: job 0:6748122055 is in state 'finished'
[2025-07-28 00:21:44] 2025-07-28 04:21:12,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:21:44] 2025-07-28 04:21:12,267 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 00:21:44] 2025-07-28 04:21:12,271 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3290.6335625000006
[2025-07-28 00:21:44] 2025-07-28 04:21:12,280 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6748122055/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:21:44] 2025-07-28 04:21:12,281 | INFO     | extracted standard info from prmon json
[2025-07-28 00:21:44] 2025-07-28 04:21:12,281 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:21:44] 2025-07-28 04:21:12,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:21:44] 2025-07-28 04:21:12,281 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:21:44] 2025-07-28 04:21:12,281 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:21:44] 2025-07-28 04:21:12,283 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:21:44] 2025-07-28 04:21:12,284 | INFO     | sum of square deviations: 170944600.5
[2025-07-28 00:21:44] 2025-07-28 04:21:12,284 | INFO     | sum of deviations: -172088442.00000003
[2025-07-28 00:21:44] 2025-07-28 04:21:12,284 | INFO     | mean x: 1753673852.5
[2025-07-28 00:21:44] 2025-07-28 04:21:12,284 | INFO     | mean y: 2532520.8292682925
[2025-07-28 00:21:44] 2025-07-28 04:21:12,284 | INFO     | -- intersect: 1767940730.0979946
[2025-07-28 00:21:44] 2025-07-28 04:21:12,284 | INFO     | intersect: 1767940730.0979946
[2025-07-28 00:21:44] 2025-07-28 04:21:12,284 | INFO     | chi2: 0.003196693013128275
[2025-07-28 00:21:44] 2025-07-28 04:21:12,285 | INFO     | -- intersect: 1767940730.0979946
[2025-07-28 00:21:44] 2025-07-28 04:21:12,285 | INFO     | current memory leak: -1.01 B/s (using 82 data points, chi2=0.00)
[2025-07-28 00:21:44] 2025-07-28 04:21:12,285 | INFO     | could have reported an average CPU frequency of 3287 MHz (6 samples)
[2025-07-28 00:21:44] 2025-07-28 04:21:12,285 | INFO     | ..............................
[2025-07-28 00:21:44] 2025-07-28 04:21:12,285 | INFO     | . Timing measurements:
[2025-07-28 00:21:44] 2025-07-28 04:21:12,285 | INFO     | . get job = 0 s
[2025-07-28 00:21:44] 2025-07-28 04:21:12,285 | INFO     | . initial setup = 2 s
[2025-07-28 00:21:44] 2025-07-28 04:21:12,285 | INFO     | . payload setup = 7 s
[2025-07-28 00:21:44] 2025-07-28 04:21:12,286 | INFO     | . stage-in = 0 s
[2025-07-28 00:21:44] 2025-07-28 04:21:12,286 | INFO     | . payload execution = 5390 s
[2025-07-28 00:21:44] 2025-07-28 04:21:12,286 | INFO     | . stage-out = 0 s
[2025-07-28 00:21:44] 2025-07-28 04:21:12,286 | INFO     | . log creation = 0 s
[2025-07-28 00:21:44] 2025-07-28 04:21:12,286 | INFO     | ..............................
[2025-07-28 00:21:44] 2025-07-28 04:21:12,367 | INFO     | 
[2025-07-28 00:21:44] 2025-07-28 04:21:12,367 | INFO     | job summary report
[2025-07-28 00:21:44] 2025-07-28 04:21:12,367 | INFO     | --------------------------------------------------
[2025-07-28 00:21:44] 2025-07-28 04:21:12,367 | INFO     | PanDA job id: 6748122055
[2025-07-28 00:21:44] 2025-07-28 04:21:12,367 | INFO     | task id: 45758961
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | errors: (none)
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | pilot state: finished 
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | transexitcode: 0
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | exeerrorcode: 0
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | exeerrordiag: 
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | exitcode: 0
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | exitmsg: OK
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | cpuconsumptiontime: 39185 s
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | nevents: 400
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | neventsw: 0
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | pid: 3138342
[2025-07-28 00:21:44] 2025-07-28 04:21:12,368 | INFO     | pgrp: 3138342
[2025-07-28 00:21:44] 2025-07-28 04:21:12,369 | INFO     | corecount: 8
[2025-07-28 00:21:44] 2025-07-28 04:21:12,369 | INFO     | event service: False
[2025-07-28 00:21:44] 2025-07-28 04:21:12,369 | INFO     | sizes: {0: 2397546, 6: 2397808, 11: 2397836, 5401: 2424233, 5402: 2433287, 5408: 2433425}
[2025-07-28 00:21:44] 2025-07-28 04:21:12,369 | INFO     | --------------------------------------------------
[2025-07-28 00:21:44] 2025-07-28 04:21:12,369 | INFO     | 
[2025-07-28 00:21:44] 2025-07-28 04:21:12,369 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-07-28 00:21:44] 2025-07-28 04:21:12,392 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,392 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,392 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,392 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,392 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,392 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,392 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,393 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:21:44] 2025-07-28 04:21:12,394 | INFO     | job 6748122055 has completed (purged errors)
[2025-07-28 00:21:44] 2025-07-28 04:21:12,394 | INFO     | overall cleanup function is called
[2025-07-28 00:21:44] 2025-07-28 04:21:13,400 | INFO     | --- collectZombieJob: --- 10, [3138342]
[2025-07-28 00:21:44] 2025-07-28 04:21:13,401 | INFO     | zombie collector waiting for pid 3138342
[2025-07-28 00:21:44] 2025-07-28 04:21:13,401 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:21:44] 2025-07-28 04:21:13,401 | INFO     | collected zombie processes
[2025-07-28 00:21:44] 2025-07-28 04:21:13,401 | INFO     | will attempt to kill all subprocesses of pid=3138342
[2025-07-28 00:21:44] 2025-07-28 04:21:13,752 | INFO     | process IDs to be killed: [3138342] (in reverse order)
[2025-07-28 00:21:44] 2025-07-28 04:21:13,865 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:21:44] 2025-07-28 04:21:13,865 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:21:44] 2025-07-28 04:21:13,878 | INFO     | did not find any defunct processes belonging to 3138342
[2025-07-28 00:21:44] 2025-07-28 04:21:13,888 | INFO     | did not find any defunct processes belonging to 3138342
[2025-07-28 00:21:44] 2025-07-28 04:21:13,889 | INFO     | ready for new job
[2025-07-28 00:21:44] 2025-07-28 04:21:13,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:21:44] 2025-07-28 04:21:13,890 | INFO     | ***************************************
[2025-07-28 00:21:44] 2025-07-28 04:21:13,891 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:21:44] 2025-07-28 04:21:13,891 | INFO     | ***************************************
[2025-07-28 00:21:44] 2025-07-28 04:21:13,891 | INFO     | 
[2025-07-28 00:21:44] 2025-07-28 04:21:13,895 | INFO     | architecture information:
[2025-07-28 00:21:44] 2025-07-28 04:21:13,896 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:21:44] 2025-07-28 04:21:13,915 | INFO     | cat /etc/os-release:
[2025-07-28 00:21:44] NAME="CentOS Linux"
[2025-07-28 00:21:44] VERSION="7 (Core)"
[2025-07-28 00:21:44] ID="centos"
[2025-07-28 00:21:44] ID_LIKE="rhel fedora"
[2025-07-28 00:21:44] VERSION_ID="7"
[2025-07-28 00:21:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:21:44] ANSI_COLOR="0;31"
[2025-07-28 00:21:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:21:44] HOME_URL="https://www.centos.org/"
[2025-07-28 00:21:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:21:44] 
[2025-07-28 00:21:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:21:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:21:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:21:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:21:44] 
[2025-07-28 00:21:44] 2025-07-28 04:21:13,916 | INFO     | ***************************************
[2025-07-28 00:21:44] 2025-07-28 04:21:14,418 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-07-28 00:21:44] 2025-07-28 04:21:14,435 | INFO     | sufficient remaining disk space (124798369792 B)
[2025-07-28 00:21:44] 2025-07-28 04:21:14,435 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:21:44] 2025-07-28 04:21:14,435 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:21:44] 2025-07-28 04:21:14,436 | INFO     | update_server=False
[2025-07-28 00:21:44] 2025-07-28 04:21:14,436 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:21:44] 2025-07-28 04:21:14,436 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:21:44] 2025-07-28 04:21:14,456 | INFO     | all job control threads have been joined
[2025-07-28 00:21:44] 2025-07-28 04:21:14,549 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 00:21:44] 2025-07-28 04:21:14,549 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 00:21:44] 2025-07-28 04:21:14,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:21:44] 2025-07-28 04:21:14,550 | INFO     | will abort loop
[2025-07-28 00:21:44] 2025-07-28 04:21:14,764 | INFO     | all payload control threads have been joined
[2025-07-28 00:21:44] 2025-07-28 04:21:14,839 | INFO     | all data control threads have been joined
[2025-07-28 00:21:44] 2025-07-28 04:21:15,440 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:15,457 | INFO     | [job] control thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:15,555 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:15,629 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:15,769 | INFO     | [payload] control thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:15,845 | INFO     | [data] control thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:15,857 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:16,132 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:16,421 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:16,441 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:16,539 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:21:44] 2025-07-28 04:21:16,914 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:16,920 | INFO     | [job] validate thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:16,942 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:17,378 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:21:44] 2025-07-28 04:21:18,383 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:20,544 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:25,317 | INFO     | job.realtimelogging is not enabled
[2025-07-28 00:21:44] 2025-07-28 04:21:26,322 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:21:44] 2025-07-28 04:21:28,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755235596096)>', '<ExcThread(monitor, started 139754460927744)>']
[2025-07-28 00:21:44] 2025-07-28 04:21:33,198 | INFO     | all workflow threads have been joined
[2025-07-28 00:21:44] 2025-07-28 04:21:33,198 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:21:44] 2025-07-28 04:21:33,199 | INFO     | traces error code: 0
[2025-07-28 00:21:44] 2025-07-28 04:21:33,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:21:44] 2025-07-28 04:21:44,060 | INFO     | PID=3131926 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:21:44] 2025-07-28 04:21:44,061 | INFO     | .. there are 12 such processes running
[2025-07-28 00:21:44] 2025-07-28 04:21:44,061 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:21:44] 2025-07-28 04:21:44,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:21:44] 2025-07-28 04:21:44,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:21:44] 2025-07-28 04:21:44,062 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:21:44] 2025-07-28 04:21:44,062 | INFO     | [monitor] control thread has ended
[2025-07-28 00:21:44] 2025-07-28 04:21:44,225 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:21:44] 2025-07-28 04:21:44,227 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:21:44] 2025-07-28 04:21:44,230 [wrapper] pilotpid: 3131926
[2025-07-28 00:21:44] 2025-07-28 04:21:44,233 [wrapper] Pilot exit status: 0
[2025-07-28 00:21:44] 2025-07-28 04:21:44,242 [wrapper] pandaids: 6748122055
[2025-07-28 00:21:44] 2025-07-28 04:21:44,319 [wrapper] cleanup supervisor_pilot 3444448 3131927
[2025-07-28 00:21:44] 2025-07-28 04:21:44,322 [wrapper] Test setup, not cleaning
[2025-07-28 00:21:44] 2025-07-28 04:21:44,325 [wrapper] apfmon messages muted
[2025-07-28 00:21:44] 2025-07-28 04:21:44,327 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:21:44] 2025-07-28 04:21:44,330 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:21:44]  *** Error codes and diagnostics ***
[2025-07-28 00:21:44]     "exeErrorCode": 0,
[2025-07-28 00:21:44]     "exeErrorDiag": "",
[2025-07-28 00:21:44]     "pilotErrorCode": 0,
[2025-07-28 00:21:44]     "pilotErrorDiag": "",
[2025-07-28 00:21:44]  *** Listing of results directory ***
[2025-07-28 00:21:44] total 407516
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:42 pilot3.tar.gz
[2025-07-28 00:21:44] -rwx------. 1 boincer umatlas     36292 Jul 27 16:47 runpilot2-wrapper.sh
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 16:47 queuedata.json
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:21:44] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:50 run_atlas
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:50 job.xml
[2025-07-28 00:21:44] -rw-r--r--. 2 boincer umatlas 239172616 Jul 27 22:50 EVNT.45758956._000002.pool.root.1
[2025-07-28 00:21:44] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:50 start_atlas.sh
[2025-07-28 00:21:44] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:50 shared
[2025-07-28 00:21:44] -rw-r--r--. 2 boincer umatlas    542908 Jul 27 22:50 input.tar.gz
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:50 boinc_lockfile
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas      2639 Jul 27 22:50 pandaJob.out
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas    980125 Jul 27 22:50 agis_schedconf.cvmfs.json
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:50 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:21:44] drwx------. 4 boincer umatlas      4096 Jul 27 22:50 pilot3
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas 172579636 Jul 28 00:20 HITS.45758961._000033.pool.root.1
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas       529 Jul 28 00:20 boinc_task_state.xml
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas      1024 Jul 28 00:21 memory_monitor_summary.json
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas    308023 Jul 28 00:21 log.45758961._000033.job.log.tgz.1
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas      7744 Jul 28 00:21 heartbeat.json
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas      6947 Jul 28 00:21 init_data.xml
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 00:21 boinc_mmap_file
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas        27 Jul 28 00:21 wrapper_checkpoint.txt
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas        95 Jul 28 00:21 pilot_heartbeat.json
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas       823 Jul 28 00:21 pilotlog.txt
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas    524949 Jul 28 00:21 log.45758961._000033.job.log.1
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas       357 Jul 28 00:21 output.list
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas       620 Jul 28 00:21 runtime_log
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas    849920 Jul 28 00:21 result.tar.gz
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas       651 Jul 28 00:21 T9vLDmvSN07n9Rq4apOajLDm4fhM0noT9bVof3QYDmN72KDmCT1mJo.diag
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas      8655 Jul 28 00:21 runtime_log.err
[2025-07-28 00:21:44] -rw-r--r--. 1 boincer umatlas     21783 Jul 28 00:21 stderr.txt
[2025-07-28 00:21:44] HITS file was successfully produced:
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas 172579636 Jul 28 00:20 shared/HITS.pool.root.1
[2025-07-28 00:21:44]  *** Contents of shared directory: ***
[2025-07-28 00:21:44] total 403492
[2025-07-28 00:21:44] -rw-r--r--. 2 boincer umatlas 239172616 Jul 27 22:50 ATLAS.root_0
[2025-07-28 00:21:44] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:50 start_atlas.sh
[2025-07-28 00:21:44] -rw-r--r--. 2 boincer umatlas    542908 Jul 27 22:50 input.tar.gz
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas 172579636 Jul 28 00:20 HITS.pool.root.1
[2025-07-28 00:21:44] -rw-------. 1 boincer umatlas    849920 Jul 28 00:21 result.tar.gz
00:21:46 (3128271): run_atlas exited; CPU time 39314.974058
00:21:46 (3128271): called boinc_finish(0)

</stderr_txt>
]]>

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