Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:22:18 (866630): wrapper (7.7.26015): starting
22:22:18 (866630): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 22:22:18] Arguments: --nthreads 8
[2025-07-27 22:22:18] Threads: 8
[2025-07-27 22:22:18] Checking for CVMFS
[2025-07-27 22:22:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:22:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:22:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:22:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:22:19] 2.13.1.0 116762 9227 207472 148832 0 188 35010611 40960000 10421 16776704 0 129819502 99.999 352760 39600 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:22:19] CVMFS is ok
[2025-07-27 22:22:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:22:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:22:19] Further information can be found at the LHC@home message board.
[2025-07-27 22:22:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:22:19] Checking for apptainer binary...
[2025-07-27 22:22:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:22:19] Running /usr/bin/apptainer --version
[2025-07-27 22:22:19] apptainer version 1.4.1-1.el9
[2025-07-27 22:22:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:22:19] c-208-39.aglt2.org
[2025-07-27 22:22:19] apptainer works
[2025-07-27 22:22:19] Set ATHENA_PROC_NUMBER=8
[2025-07-27 22:22:19] Set ATHENA_CORE_NUMBER=8
[2025-07-27 22:22:19] Starting ATLAS job with PandaID=6747413244
[2025-07-27 22:22:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:20:37]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:20:37]  protocol_id=None
[2025-07-27 23:20:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:20:37]  replicas=None
[2025-07-27 23:20:37]  scope=mc23_13p6TeV
[2025-07-27 23:20:37]  status=None
[2025-07-27 23:20:37]  status_code=0
[2025-07-27 23:20:37]  storage_token=
[2025-07-27 23:20:37]  surl=/tmp/boinchome/slots/9/PanDA_Pilot-6747413244/log.45743349._050018.job.log.tgz.1
[2025-07-27 23:20:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/b6/log.45743349._050018.job.log.tgz.1
[2025-07-27 23:20:37]  workdir=None
[2025-07-27 23:20:37] ]
[2025-07-27 23:20:37] 2025-07-28 03:19:58,583 | INFO     | transferring file log.45743349._050018.job.log.tgz.1 from /tmp/boinchome/slots/9/PanDA_Pilot-6747413244/log.45743349._050018.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 23:20:37] 2025-07-28 03:19:58,583 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/9/PanDA_Pilot-6747413244/log.45743349._050018.job.log.tgz.1 /tmp/boinchome/slots/9/log.45743349._050018.job
[2025-07-27 23:20:37] 2025-07-28 03:19:58,600 | INFO     | adding to output.list: log.45743349._050018.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/b6/log.45743349._050018.job.log.tg
[2025-07-27 23:20:37] 2025-07-28 03:19:58,601 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:20:37] 2025-07-28 03:19:58,601 | INFO     | summary of transferred files:
[2025-07-27 23:20:37] 2025-07-28 03:19:58,601 | INFO     |  -- lfn=log.45743349._050018.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:20:37] 2025-07-28 03:19:58,601 | INFO     | stage-out finished correctly
[2025-07-27 23:20:37] 2025-07-28 03:19:58,662 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:20:37] 2025-07-28 03:19:59,138 | INFO     | PID=878560 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 23:20:37] 2025-07-28 03:19:59,138 | INFO     | .. there are 15 such processes running
[2025-07-27 23:20:37] 2025-07-28 03:20:01,526 | WARNING  | process 900879 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 23:20:37] 2025-07-28 03:20:01,526 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6747413244/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:20:37] 2025-07-28 03:20:01,694 | INFO     | job 6747413244 has state=finished
[2025-07-27 23:20:37] 2025-07-28 03:20:01,694 | INFO     | preparing for final server update for job 6747413244 in state='finished'
[2025-07-27 23:20:37] 2025-07-28 03:20:01,750 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 23:20:37] 2025-07-28 03:20:01,750 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:20:37] 2025-07-28 03:20:01,751 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:20:37] 2025-07-28 03:20:01,751 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:20:37] 2025-07-28 03:20:01,751 | INFO     | job 6747413244 has finished - writing final server update
[2025-07-27 23:20:37] 2025-07-28 03:20:01,751 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:20:37] 2025-07-28 03:20:01,751 | INFO     | executing command: lscpu
[2025-07-27 23:20:37] 2025-07-28 03:20:01,806 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:20:37] 2025-07-28 03:20:01,914 | INFO     | number of running child processes to parent process 900879: 1
[2025-07-27 23:20:37] 2025-07-28 03:20:01,914 | INFO     | maximum number of monitored processes: 6
[2025-07-27 23:20:37] 2025-07-28 03:20:04,417 | INFO     | monitor loop #249: job 0:6747413244 is in state 'finished'
[2025-07-27 23:20:37] 2025-07-28 03:20:04,418 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:20:37] 2025-07-28 03:20:05,347 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 23:20:37] 2025-07-28 03:20:05,352 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3683.7946328125026
[2025-07-27 23:20:37] 2025-07-28 03:20:05,365 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6747413244/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:20:37] 2025-07-28 03:20:05,365 | INFO     | extracted standard info from prmon json
[2025-07-27 23:20:37] 2025-07-28 03:20:05,365 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:20:37] 2025-07-28 03:20:05,365 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:20:37] 2025-07-28 03:20:05,365 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:20:37] 2025-07-28 03:20:05,366 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | sum of square deviations: 38744912.5
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | sum of deviations: -86736937.0
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | mean x: 1753671171.5
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | mean y: 2547123.68
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | -- intersect: 3928431997.4969606
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | intersect: 3928431997.4969606
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | chi2: 0.0006432738624047923
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | -- intersect: 3928431997.4969606
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | current memory leak: -2.24 B/s (using 50 data points, chi2=0.00)
[2025-07-27 23:20:37] 2025-07-28 03:20:05,367 | INFO     | could have reported an average CPU frequency of 3732 MHz (5 samples)
[2025-07-27 23:20:37] 2025-07-28 03:20:05,368 | INFO     | ..............................
[2025-07-27 23:20:37] 2025-07-28 03:20:05,368 | INFO     | . Timing measurements:
[2025-07-27 23:20:37] 2025-07-28 03:20:05,368 | INFO     | . get job = 0 s
[2025-07-27 23:20:37] 2025-07-28 03:20:05,368 | INFO     | . initial setup = 2 s
[2025-07-27 23:20:37] 2025-07-28 03:20:05,368 | INFO     | . payload setup = 5 s
[2025-07-27 23:20:37] 2025-07-28 03:20:05,368 | INFO     | . stage-in = 0 s
[2025-07-27 23:20:37] 2025-07-28 03:20:05,368 | INFO     | . payload execution = 3424 s
[2025-07-27 23:20:37] 2025-07-28 03:20:05,368 | INFO     | . stage-out = 0 s
[2025-07-27 23:20:37] 2025-07-28 03:20:05,368 | INFO     | . log creation = 0 s
[2025-07-27 23:20:37] 2025-07-28 03:20:05,368 | INFO     | ..............................
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | 
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | job summary report
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | --------------------------------------------------
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | PanDA job id: 6747413244
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | task id: 45743349
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | errors: (none)
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | pilot state: finished 
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | transexitcode: 0
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | exeerrorcode: 0
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | exeerrordiag: 
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | exitcode: 0
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | exitmsg: OK
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | cpuconsumptiontime: 25682 s
[2025-07-27 23:20:37] 2025-07-28 03:20:05,424 | INFO     | nevents: 400
[2025-07-27 23:20:37] 2025-07-28 03:20:05,425 | INFO     | neventsw: 0
[2025-07-27 23:20:37] 2025-07-28 03:20:05,425 | INFO     | pid: 900879
[2025-07-27 23:20:37] 2025-07-28 03:20:05,425 | INFO     | pgrp: 900879
[2025-07-27 23:20:37] 2025-07-28 03:20:05,425 | INFO     | corecount: 8
[2025-07-27 23:20:37] 2025-07-28 03:20:05,425 | INFO     | event service: False
[2025-07-27 23:20:37] 2025-07-28 03:20:05,425 | INFO     | sizes: {0: 2397475, 4: 2397737, 10: 2397765, 3433: 2423497, 3434: 2423496, 3436: 2432734, 3443: 2432904}
[2025-07-27 23:20:37] 2025-07-28 03:20:05,425 | INFO     | --------------------------------------------------
[2025-07-27 23:20:37] 2025-07-28 03:20:05,425 | INFO     | 
[2025-07-27 23:20:37] 2025-07-28 03:20:05,425 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-07-27 23:20:37] 2025-07-28 03:20:05,444 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,444 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,444 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,444 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,444 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,444 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,444 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | job 6747413244 has completed (purged errors)
[2025-07-27 23:20:37] 2025-07-28 03:20:05,445 | INFO     | overall cleanup function is called
[2025-07-27 23:20:37] 2025-07-28 03:20:06,452 | INFO     | --- collectZombieJob: --- 10, [900879]
[2025-07-27 23:20:37] 2025-07-28 03:20:06,452 | INFO     | zombie collector waiting for pid 900879
[2025-07-27 23:20:37] 2025-07-28 03:20:06,453 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:20:37] 2025-07-28 03:20:06,453 | INFO     | collected zombie processes
[2025-07-27 23:20:37] 2025-07-28 03:20:06,453 | INFO     | will attempt to kill all subprocesses of pid=900879
[2025-07-27 23:20:37] 2025-07-28 03:20:06,790 | INFO     | process IDs to be killed: [900879] (in reverse order)
[2025-07-27 23:20:37] 2025-07-28 03:20:06,902 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:20:37] 2025-07-28 03:20:06,903 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:20:37] 2025-07-28 03:20:06,917 | INFO     | did not find any defunct processes belonging to 900879
[2025-07-27 23:20:37] 2025-07-28 03:20:06,928 | INFO     | did not find any defunct processes belonging to 900879
[2025-07-27 23:20:37] 2025-07-28 03:20:06,929 | INFO     | ready for new job
[2025-07-27 23:20:37] 2025-07-28 03:20:06,929 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:20:37] 2025-07-28 03:20:06,930 | INFO     | ***************************************
[2025-07-27 23:20:37] 2025-07-28 03:20:06,930 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:20:37] 2025-07-28 03:20:06,930 | INFO     | ***************************************
[2025-07-27 23:20:37] 2025-07-28 03:20:06,930 | INFO     | 
[2025-07-27 23:20:37] 2025-07-28 03:20:06,934 | INFO     | architecture information:
[2025-07-27 23:20:37] 2025-07-28 03:20:06,935 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:20:37] 2025-07-28 03:20:06,949 | INFO     | cat /etc/os-release:
[2025-07-27 23:20:37] NAME="CentOS Linux"
[2025-07-27 23:20:37] VERSION="7 (Core)"
[2025-07-27 23:20:37] ID="centos"
[2025-07-27 23:20:37] ID_LIKE="rhel fedora"
[2025-07-27 23:20:37] VERSION_ID="7"
[2025-07-27 23:20:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:20:37] ANSI_COLOR="0;31"
[2025-07-27 23:20:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:20:37] HOME_URL="https://www.centos.org/"
[2025-07-27 23:20:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:20:37] 
[2025-07-27 23:20:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:20:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:20:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:20:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:20:37] 
[2025-07-27 23:20:37] 2025-07-28 03:20:06,950 | INFO     | ***************************************
[2025-07-27 23:20:37] 2025-07-28 03:20:07,452 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-07-27 23:20:37] 2025-07-28 03:20:07,468 | INFO     | sufficient remaining disk space (165418106880 B)
[2025-07-27 23:20:37] 2025-07-28 03:20:07,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:20:37] 2025-07-28 03:20:07,469 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:20:37] 2025-07-28 03:20:07,469 | INFO     | update_server=False
[2025-07-27 23:20:37] 2025-07-28 03:20:07,469 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:20:37] 2025-07-28 03:20:07,469 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:20:37] 2025-07-28 03:20:07,667 | INFO     | all data control threads have been joined
[2025-07-27 23:20:37] 2025-07-28 03:20:07,929 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:20:37] 2025-07-28 03:20:07,929 | INFO     | aborting loop
[2025-07-27 23:20:37] 2025-07-28 03:20:08,277 | INFO     | all job control threads have been joined
[2025-07-27 23:20:37] 2025-07-28 03:20:08,460 | INFO     | all payload control threads have been joined
[2025-07-27 23:20:37] 2025-07-28 03:20:08,474 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:08,490 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:08,670 | INFO     | [data] control thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:08,876 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:08,935 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:08,982 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:09,055 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:09,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:20:37] 2025-07-28 03:20:09,282 | INFO     | [job] control thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:09,369 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:09,402 | INFO     | [job] validate thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:09,466 | INFO     | [payload] control thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:09,475 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:09,634 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:09,703 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:10,435 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:20:37] 2025-07-28 03:20:11,441 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:13,234 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:20:37] 2025-07-28 03:20:14,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139706695837504)>', '<ExcThread(monitor, started 139705546958592)>']
[2025-07-27 23:20:37] 2025-07-28 03:20:19,900 | INFO     | all workflow threads have been joined
[2025-07-27 23:20:37] 2025-07-28 03:20:19,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:20:37] 2025-07-28 03:20:19,900 | INFO     | traces error code: 0
[2025-07-27 23:20:37] 2025-07-28 03:20:19,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:20:37] 2025-07-28 03:20:37,666 | INFO     | PID=878560 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 23:20:37] 2025-07-28 03:20:37,666 | INFO     | .. there are 16 such processes running
[2025-07-27 23:20:37] 2025-07-28 03:20:37,667 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:20:37] 2025-07-28 03:20:37,667 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:20:37] 2025-07-28 03:20:37,667 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:20:37] 2025-07-28 03:20:37,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:20:37] 2025-07-28 03:20:37,668 | INFO     | [monitor] control thread has ended
[2025-07-27 23:20:37] 2025-07-28 03:20:37,755 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:20:37] 2025-07-28 03:20:37,757 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:20:37] 2025-07-28 03:20:37,760 [wrapper] pilotpid: 878560
[2025-07-27 23:20:37] 2025-07-28 03:20:37,763 [wrapper] Pilot exit status: 0
[2025-07-27 23:20:37] 2025-07-28 03:20:37,772 [wrapper] pandaids: 6747413244
[2025-07-27 23:20:37] 2025-07-28 03:20:37,857 [wrapper] cleanup supervisor_pilot 1086290 878561
[2025-07-27 23:20:37] 2025-07-28 03:20:37,860 [wrapper] Test setup, not cleaning
[2025-07-27 23:20:37] 2025-07-28 03:20:37,862 [wrapper] apfmon messages muted
[2025-07-27 23:20:37] 2025-07-28 03:20:37,864 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:20:37] 2025-07-28 03:20:37,867 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:20:37]  *** Error codes and diagnostics ***
[2025-07-27 23:20:37]     "exeErrorCode": 0,
[2025-07-27 23:20:37]     "exeErrorDiag": "",
[2025-07-27 23:20:37]     "pilotErrorCode": 0,
[2025-07-27 23:20:37]     "pilotErrorDiag": "",
[2025-07-27 23:20:37]  *** Listing of results directory ***
[2025-07-27 23:20:37] total 349736
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 23:20:37] -rwx------. 1 boincer umatlas     36292 Jul 27 10:28 runpilot2-wrapper.sh
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:28 queuedata.json
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:20:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:22 run_atlas
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:22 job.xml
[2025-07-27 23:20:37] -rw-r--r--. 2 boincer umatlas 145827427 Jul 27 22:22 EVNT.45743347._002781.pool.root.1
[2025-07-27 23:20:37] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:22 start_atlas.sh
[2025-07-27 23:20:37] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:22 shared
[2025-07-27 23:20:37] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 22:22 input.tar.gz
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:22 boinc_lockfile
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 22:22 pandaJob.out
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas    980125 Jul 27 22:22 agis_schedconf.cvmfs.json
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:22 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:20:37] drwx------. 4 boincer umatlas      4096 Jul 27 22:22 pilot3
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas      7175 Jul 27 23:13 init_data.xml
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas 207153711 Jul 27 23:19 HITS.45743349._050018.pool.root.1
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas       529 Jul 27 23:19 boinc_task_state.xml
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas      1027 Jul 27 23:19 memory_monitor_summary.json
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas    284390 Jul 27 23:19 log.45743349._050018.job.log.tgz.1
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas      7764 Jul 27 23:20 heartbeat.json
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 23:20 boinc_mmap_file
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas        27 Jul 27 23:20 wrapper_checkpoint.txt
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas       822 Jul 27 23:20 pilotlog.txt
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas        95 Jul 27 23:20 pilot_heartbeat.json
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas    350143 Jul 27 23:20 log.45743349._050018.job.log.1
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas       357 Jul 27 23:20 output.list
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas       620 Jul 27 23:20 runtime_log
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas    655360 Jul 27 23:20 result.tar.gz
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 23:20 runtime_log.err
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas       651 Jul 27 23:20 kZ9MDmEXH07n9Rq4apOajLDm4fhM0noT9bVof3QYDmCg2KDmmcDQNm.diag
[2025-07-27 23:20:37] -rw-r--r--. 1 boincer umatlas     21893 Jul 27 23:20 stderr.txt
[2025-07-27 23:20:37] HITS file was successfully produced:
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas 207153711 Jul 27 23:19 shared/HITS.pool.root.1
[2025-07-27 23:20:37]  *** Contents of shared directory: ***
[2025-07-27 23:20:37] total 345908
[2025-07-27 23:20:37] -rw-r--r--. 2 boincer umatlas 145827427 Jul 27 22:22 ATLAS.root_0
[2025-07-27 23:20:37] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:22 start_atlas.sh
[2025-07-27 23:20:37] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 22:22 input.tar.gz
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas 207153711 Jul 27 23:19 HITS.pool.root.1
[2025-07-27 23:20:37] -rw-------. 1 boincer umatlas    655360 Jul 27 23:20 result.tar.gz
23:20:39 (866630): run_atlas exited; CPU time 25763.170628
23:20:39 (866630): called boinc_finish(0)

</stderr_txt>
]]>

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