Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:18:01 (2999180): wrapper (7.7.26015): starting
22:18:01 (2999180): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 22:18:01] Arguments: --nthreads 8
[2025-07-27 22:18:01] Threads: 8
[2025-07-27 22:18:01] Checking for CVMFS
[2025-07-27 22:18:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:18:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:18:01] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:18:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:18:01] 2.13.1.0 704839 14952 156788 148832 3 193 32394760 40960000 9418 16776704 0 46882481 99.896 17323120 42285 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:18:01] CVMFS is ok
[2025-07-27 22:18:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:18:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:18:01] Further information can be found at the LHC@home message board.
[2025-07-27 22:18:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:18:01] Checking for apptainer binary...
[2025-07-27 22:18:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:18:01] Running /usr/bin/apptainer --version
[2025-07-27 22:18:01] apptainer version 1.4.1-1.el9
[2025-07-27 22:18:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:18:02] c-212-4.aglt2.org
[2025-07-27 22:18:02] apptainer works
[2025-07-27 22:18:02] Set ATHENA_PROC_NUMBER=8
[2025-07-27 22:18:02] Set ATHENA_CORE_NUMBER=8
[2025-07-27 22:18:02] Starting ATLAS job with PandaID=6747413004
[2025-07-27 22:18:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:41:14]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:41:14]  is_tar=False
[2025-07-27 23:41:14]  lfn=log.45743349._049887.job.log.tgz.1
[2025-07-27 23:41:14]  mtime=0
[2025-07-27 23:41:14]  protocol_id=None
[2025-07-27 23:41:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:41:14]  replicas=None
[2025-07-27 23:41:14]  scope=mc23_13p6TeV
[2025-07-27 23:41:14]  status=None
[2025-07-27 23:41:14]  status_code=0
[2025-07-27 23:41:14]  storage_token=
[2025-07-27 23:41:14]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6747413004/log.45743349._049887.job.log.tgz.1
[2025-07-27 23:41:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/d5/log.45743349._049887.job.log.tgz.1
[2025-07-27 23:41:14]  workdir=None
[2025-07-27 23:41:14] ]
[2025-07-27 23:41:14] 2025-07-28 03:40:34,540 | INFO     | transferring file log.45743349._049887.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6747413004/log.45743349._049887.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 23:41:14] 2025-07-28 03:40:34,540 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6747413004/log.45743349._049887.job.log.tgz.1 /tmp/boinchome/slots/5/log.45743349._049887.job
[2025-07-27 23:41:14] 2025-07-28 03:40:34,563 | INFO     | adding to output.list: log.45743349._049887.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/d5/log.45743349._049887.job.log.tg
[2025-07-27 23:41:14] 2025-07-28 03:40:34,564 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:41:14] 2025-07-28 03:40:34,564 | INFO     | summary of transferred files:
[2025-07-27 23:41:14] 2025-07-28 03:40:34,564 | INFO     |  -- lfn=log.45743349._049887.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:41:14] 2025-07-28 03:40:34,564 | INFO     | stage-out finished correctly
[2025-07-27 23:41:14] 2025-07-28 03:40:35,043 | INFO     | monitor loop #363: job 0:6747413004 is in state 'finished'
[2025-07-27 23:41:14] 2025-07-28 03:40:35,043 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:41:14] 2025-07-28 03:40:36,868 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:41:14] 2025-07-28 03:40:36,944 | INFO     | job 6747413004 has state=finished
[2025-07-27 23:41:14] 2025-07-28 03:40:36,944 | INFO     | preparing for final server update for job 6747413004 in state='finished'
[2025-07-27 23:41:14] 2025-07-28 03:40:36,945 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:41:14] 2025-07-28 03:40:36,945 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:41:14] 2025-07-28 03:40:36,945 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:41:14] 2025-07-28 03:40:36,945 | INFO     | job 6747413004 has finished - writing final server update
[2025-07-27 23:41:14] 2025-07-28 03:40:36,946 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:41:14] 2025-07-28 03:40:36,946 | INFO     | executing command: lscpu
[2025-07-27 23:41:14] 2025-07-28 03:40:37,015 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:41:14] 2025-07-28 03:40:37,547 | INFO     | monitor loop #364: job 0:6747413004 is in state 'finished'
[2025-07-27 23:41:14] 2025-07-28 03:40:37,547 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:41:14] 2025-07-28 03:40:40,050 | INFO     | monitor loop #365: job 0:6747413004 is in state 'finished'
[2025-07-27 23:41:14] 2025-07-28 03:40:40,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:41:14] 2025-07-28 03:40:41,762 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 23:41:14] 2025-07-28 03:40:41,768 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3276.044833333332
[2025-07-27 23:41:14] 2025-07-28 03:40:41,782 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6747413004/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:41:14] 2025-07-28 03:40:41,782 | INFO     | extracted standard info from prmon json
[2025-07-27 23:41:14] 2025-07-28 03:40:41,782 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:41:14] 2025-07-28 03:40:41,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:41:14] 2025-07-28 03:40:41,783 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:41:14] 2025-07-28 03:40:41,783 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:41:14] 2025-07-28 03:40:41,785 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:41:14] 2025-07-28 03:40:41,785 | INFO     | sum of square deviations: 125630262.5
[2025-07-27 23:41:14] 2025-07-28 03:40:41,785 | INFO     | sum of deviations: -2343055902.5
[2025-07-27 23:41:14] 2025-07-28 03:40:41,785 | INFO     | mean x: 1753671652.5
[2025-07-27 23:41:14] 2025-07-28 03:40:41,785 | INFO     | mean y: 2563863.5
[2025-07-27 23:41:14] 2025-07-28 03:40:41,785 | INFO     | -- intersect: 32709259166.608627
[2025-07-27 23:41:14] 2025-07-28 03:40:41,786 | INFO     | intersect: 32709259166.608627
[2025-07-27 23:41:14] 2025-07-28 03:40:41,786 | INFO     | chi2: 0.0023749612995482682
[2025-07-27 23:41:14] 2025-07-28 03:40:41,786 | INFO     | -- intersect: 32709259166.608627
[2025-07-27 23:41:14] 2025-07-28 03:40:41,786 | INFO     | current memory leak: -18.65 B/s (using 74 data points, chi2=0.00)
[2025-07-27 23:41:14] 2025-07-28 03:40:41,786 | INFO     | could have reported an average CPU frequency of 3274 MHz (6 samples)
[2025-07-27 23:41:14] 2025-07-28 03:40:41,786 | INFO     | ..............................
[2025-07-27 23:41:14] 2025-07-28 03:40:41,786 | INFO     | . Timing measurements:
[2025-07-27 23:41:14] 2025-07-28 03:40:41,787 | INFO     | . get job = 0 s
[2025-07-27 23:41:14] 2025-07-28 03:40:41,787 | INFO     | . initial setup = 2 s
[2025-07-27 23:41:14] 2025-07-28 03:40:41,787 | INFO     | . payload setup = 7 s
[2025-07-27 23:41:14] 2025-07-28 03:40:41,787 | INFO     | . stage-in = 0 s
[2025-07-27 23:41:14] 2025-07-28 03:40:41,787 | INFO     | . payload execution = 4914 s
[2025-07-27 23:41:14] 2025-07-28 03:40:41,787 | INFO     | . stage-out = 0 s
[2025-07-27 23:41:14] 2025-07-28 03:40:41,787 | INFO     | . log creation = 0 s
[2025-07-27 23:41:14] 2025-07-28 03:40:41,787 | INFO     | ..............................
[2025-07-27 23:41:14] 2025-07-28 03:40:42,084 | INFO     | 
[2025-07-27 23:41:14] 2025-07-28 03:40:42,084 | INFO     | job summary report
[2025-07-27 23:41:14] 2025-07-28 03:40:42,084 | INFO     | --------------------------------------------------
[2025-07-27 23:41:14] 2025-07-28 03:40:42,084 | INFO     | PanDA job id: 6747413004
[2025-07-27 23:41:14] 2025-07-28 03:40:42,084 | INFO     | task id: 45743349
[2025-07-27 23:41:14] 2025-07-28 03:40:42,084 | INFO     | errors: (none)
[2025-07-27 23:41:14] 2025-07-28 03:40:42,084 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:41:14] 2025-07-28 03:40:42,084 | INFO     | pilot state: finished 
[2025-07-27 23:41:14] 2025-07-28 03:40:42,084 | INFO     | transexitcode: 0
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | exeerrorcode: 0
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | exeerrordiag: 
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | exitcode: 0
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | exitmsg: OK
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | cpuconsumptiontime: 35738 s
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | nevents: 400
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | neventsw: 0
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | pid: 3009346
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | pgrp: 3009346
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | corecount: 8
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | event service: False
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 4925: 2423933, 4927: 2432931, 4929: 2432987, 4934: 2433309}
[2025-07-27 23:41:14] 2025-07-28 03:40:42,085 | INFO     | --------------------------------------------------
[2025-07-27 23:41:14] 2025-07-28 03:40:42,086 | INFO     | 
[2025-07-27 23:41:14] 2025-07-28 03:40:42,086 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-27 23:41:14] 2025-07-28 03:40:42,111 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,111 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,112 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,112 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,112 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,112 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,112 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,112 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,114 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:41:14] 2025-07-28 03:40:42,115 | INFO     | job 6747413004 has completed (purged errors)
[2025-07-27 23:41:14] 2025-07-28 03:40:42,115 | INFO     | overall cleanup function is called
[2025-07-27 23:41:14] 2025-07-28 03:40:43,124 | INFO     | --- collectZombieJob: --- 10, [3009346]
[2025-07-27 23:41:14] 2025-07-28 03:40:43,124 | INFO     | zombie collector waiting for pid 3009346
[2025-07-27 23:41:14] 2025-07-28 03:40:43,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:41:14] 2025-07-28 03:40:43,125 | INFO     | collected zombie processes
[2025-07-27 23:41:14] 2025-07-28 03:40:43,125 | INFO     | will attempt to kill all subprocesses of pid=3009346
[2025-07-27 23:41:14] 2025-07-28 03:40:43,507 | INFO     | process IDs to be killed: [3009346] (in reverse order)
[2025-07-27 23:41:14] 2025-07-28 03:40:43,636 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:41:14] 2025-07-28 03:40:43,636 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:41:14] 2025-07-28 03:40:43,650 | INFO     | did not find any defunct processes belonging to 3009346
[2025-07-27 23:41:14] 2025-07-28 03:40:43,660 | INFO     | did not find any defunct processes belonging to 3009346
[2025-07-27 23:41:14] 2025-07-28 03:40:43,660 | INFO     | ready for new job
[2025-07-27 23:41:14] 2025-07-28 03:40:43,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:41:14] 2025-07-28 03:40:43,662 | INFO     | ***************************************
[2025-07-27 23:41:14] 2025-07-28 03:40:43,662 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:41:14] 2025-07-28 03:40:43,662 | INFO     | ***************************************
[2025-07-27 23:41:14] 2025-07-28 03:40:43,662 | INFO     | 
[2025-07-27 23:41:14] 2025-07-28 03:40:43,667 | INFO     | architecture information:
[2025-07-27 23:41:14] 2025-07-28 03:40:43,667 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:41:14] 2025-07-28 03:40:43,688 | INFO     | cat /etc/os-release:
[2025-07-27 23:41:14] NAME="CentOS Linux"
[2025-07-27 23:41:14] VERSION="7 (Core)"
[2025-07-27 23:41:14] ID="centos"
[2025-07-27 23:41:14] ID_LIKE="rhel fedora"
[2025-07-27 23:41:14] VERSION_ID="7"
[2025-07-27 23:41:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:41:14] ANSI_COLOR="0;31"
[2025-07-27 23:41:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:41:14] HOME_URL="https://www.centos.org/"
[2025-07-27 23:41:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:41:14] 
[2025-07-27 23:41:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:41:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:41:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:41:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:41:14] 
[2025-07-27 23:41:14] 2025-07-28 03:40:43,689 | INFO     | ***************************************
[2025-07-27 23:41:14] 2025-07-28 03:40:44,192 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-27 23:41:14] 2025-07-28 03:40:44,215 | INFO     | sufficient remaining disk space (124457582592 B)
[2025-07-27 23:41:14] 2025-07-28 03:40:44,215 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:41:14] 2025-07-28 03:40:44,215 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:41:14] 2025-07-28 03:40:44,215 | INFO     | update_server=False
[2025-07-27 23:41:14] 2025-07-28 03:40:44,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:41:14] 2025-07-28 03:40:44,216 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:41:14] 2025-07-28 03:40:44,216 | INFO     | aborting loop
[2025-07-27 23:41:14] 2025-07-28 03:40:44,593 | INFO     | all data control threads have been joined
[2025-07-27 23:41:14] 2025-07-28 03:40:45,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:41:14] 2025-07-28 03:40:45,219 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:45,222 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:45,523 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:45,533 | INFO     | all payload control threads have been joined
[2025-07-27 23:41:14] 2025-07-28 03:40:45,596 | INFO     | [data] control thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:45,655 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:45,734 | INFO     | all job control threads have been joined
[2025-07-27 23:41:14] 2025-07-28 03:40:45,907 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:45,988 | INFO     | [job] validate thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:46,037 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:46,211 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:46,245 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:46,539 | INFO     | [payload] control thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:46,702 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:46,740 | INFO     | [job] control thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:46,877 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:41:14] 2025-07-28 03:40:47,172 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:47,454 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:41:14] 2025-07-28 03:40:47,882 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:51,460 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:41:14] 2025-07-28 03:40:51,955 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140286811400000)>', '<ExcThread(monitor, started 140286030239488)>']
[2025-07-27 23:41:14] 2025-07-28 03:40:56,980 | INFO     | all workflow threads have been joined
[2025-07-27 23:41:14] 2025-07-28 03:40:56,980 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:41:14] 2025-07-28 03:40:56,980 | INFO     | traces error code: 0
[2025-07-27 23:41:14] 2025-07-28 03:40:56,980 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:41:14] 2025-07-28 03:41:13,741 | INFO     | PID=3002795 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 23:41:14] 2025-07-28 03:41:13,742 | INFO     | .. there are 13 such processes running
[2025-07-27 23:41:14] 2025-07-28 03:41:13,742 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:41:14] 2025-07-28 03:41:13,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:41:14] 2025-07-28 03:41:13,743 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:41:14] 2025-07-28 03:41:13,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:41:14] 2025-07-28 03:41:13,743 | INFO     | [monitor] control thread has ended
[2025-07-27 23:41:14] 2025-07-28 03:41:13,845 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:41:14] 2025-07-28 03:41:13,853 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:41:14] 2025-07-28 03:41:13,858 [wrapper] pilotpid: 3002795
[2025-07-27 23:41:14] 2025-07-28 03:41:13,861 [wrapper] Pilot exit status: 0
[2025-07-27 23:41:14] 2025-07-28 03:41:13,875 [wrapper] pandaids: 6747413004
[2025-07-27 23:41:14] 2025-07-28 03:41:13,957 [wrapper] cleanup supervisor_pilot 3301455 3002796
[2025-07-27 23:41:14] 2025-07-28 03:41:13,962 [wrapper] Test setup, not cleaning
[2025-07-27 23:41:14] 2025-07-28 03:41:13,968 [wrapper] apfmon messages muted
[2025-07-27 23:41:14] 2025-07-28 03:41:13,971 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:41:14] 2025-07-28 03:41:13,977 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:41:14]  *** Error codes and diagnostics ***
[2025-07-27 23:41:14]     "exeErrorCode": 0,
[2025-07-27 23:41:14]     "exeErrorDiag": "",
[2025-07-27 23:41:14]     "pilotErrorCode": 0,
[2025-07-27 23:41:14]     "pilotErrorDiag": "",
[2025-07-27 23:41:14]  *** Listing of results directory ***
[2025-07-27 23:41:14] total 359016
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:18 queuedata.json
[2025-07-27 23:41:14] -rwx------. 1 boincer umatlas     36292 Jul 27 10:18 runpilot2-wrapper.sh
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:41:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:18 run_atlas
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:18 job.xml
[2025-07-27 23:41:14] -rw-r--r--. 2 boincer umatlas 147207171 Jul 27 22:18 EVNT.45743347._002772.pool.root.1
[2025-07-27 23:41:14] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:18 start_atlas.sh
[2025-07-27 23:41:14] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:18 shared
[2025-07-27 23:41:14] -rw-r--r--. 2 boincer umatlas    542902 Jul 27 22:18 input.tar.gz
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:18 boinc_lockfile
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 22:18 pandaJob.out
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas    980125 Jul 27 22:18 agis_schedconf.cvmfs.json
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:18 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:41:14] drwx------. 4 boincer umatlas      4096 Jul 27 22:18 pilot3
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas      6946 Jul 27 23:39 init_data.xml
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas 214966871 Jul 27 23:40 HITS.45743349._049887.pool.root.1
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas       529 Jul 27 23:40 boinc_task_state.xml
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas      1026 Jul 27 23:40 memory_monitor_summary.json
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas    309532 Jul 27 23:40 log.45743349._049887.job.log.tgz.1
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas      7765 Jul 27 23:40 heartbeat.json
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 23:41 boinc_mmap_file
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas        27 Jul 27 23:41 wrapper_checkpoint.txt
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas        95 Jul 27 23:41 pilot_heartbeat.json
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas       823 Jul 27 23:41 pilotlog.txt
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas    482575 Jul 27 23:41 log.45743349._049887.job.log.1
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas       357 Jul 27 23:41 output.list
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas       620 Jul 27 23:41 runtime_log
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas    808960 Jul 27 23:41 result.tar.gz
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas       650 Jul 27 23:41 tU2LDm6NH07n9Rq4apOajLDm4fhM0noT9bVof3QYDmTf2KDmHsDa5m.diag
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 23:41 runtime_log.err
[2025-07-27 23:41:14] -rw-r--r--. 1 boincer umatlas     21590 Jul 27 23:41 stderr.txt
[2025-07-27 23:41:14] HITS file was successfully produced:
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas 214966871 Jul 27 23:40 shared/HITS.pool.root.1
[2025-07-27 23:41:14]  *** Contents of shared directory: ***
[2025-07-27 23:41:14] total 355036
[2025-07-27 23:41:14] -rw-r--r--. 2 boincer umatlas 147207171 Jul 27 22:18 ATLAS.root_0
[2025-07-27 23:41:14] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:18 start_atlas.sh
[2025-07-27 23:41:14] -rw-r--r--. 2 boincer umatlas    542902 Jul 27 22:18 input.tar.gz
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas 214966871 Jul 27 23:40 HITS.pool.root.1
[2025-07-27 23:41:14] -rw-------. 1 boincer umatlas    808960 Jul 27 23:41 result.tar.gz
23:41:15 (2999180): run_atlas exited; CPU time 35865.189775
23:41:15 (2999180): called boinc_finish(0)

</stderr_txt>
]]>

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