Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-28 14:56:44 (8008): Detected: vboxwrapper 26206
2025-07-28 14:56:44 (8008): Detected: BOINC client v7.16.20
2025-07-28 14:56:45 (8008): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-07-28 14:56:45 (8008): Successfully copied 'init_data.xml' to the shared directory.
2025-07-28 14:56:46 (8008): Create VM. (boinc_104be4e5ccabac9b, slot#0)
2025-07-28 14:56:46 (8008): Setting Memory Size for VM. (4800MB)
2025-07-28 14:56:46 (8008): Setting CPU Count for VM. (8)
2025-07-28 14:56:47 (8008): Setting Chipset Options for VM.
2025-07-28 14:56:47 (8008): Setting Graphics Controller Options for VM.
2025-07-28 14:56:47 (8008): Setting Boot Options for VM.
2025-07-28 14:56:47 (8008): Setting Network Configuration for NAT.
2025-07-28 14:56:48 (8008): Enabling VM Network Access.
2025-07-28 14:56:48 (8008): Disabling USB Support for VM.
2025-07-28 14:56:48 (8008): Disabling COM Port Support for VM.
2025-07-28 14:56:48 (8008): Disabling LPT Port Support for VM.
2025-07-28 14:56:49 (8008): Disabling Audio Support for VM.
2025-07-28 14:56:49 (8008): Disabling Clipboard Support for VM.
2025-07-28 14:56:49 (8008): Disabling Drag and Drop Support for VM.
2025-07-28 14:56:49 (8008): Adding storage controller(s) to VM.
2025-07-28 14:56:50 (8008): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-28 14:56:51 (8008): Adding VirtualBox Guest Additions to VM.
2025-07-28 14:56:51 (8008): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-28 14:56:51 (8008): forwarding host port 57498 to guest port 80
2025-07-28 14:56:51 (8008): Enabling remote desktop for VM.
2025-07-28 14:56:52 (8008): Required extension pack not installed, remote desktop not enabled.
2025-07-28 14:56:52 (8008): Enabling shared directory for VM.
2025-07-28 14:56:52 (8008): Starting VM using VBoxManage interface. (boinc_104be4e5ccabac9b, slot#0)
2025-07-28 14:56:58 (8008): Successfully started VM. (PID = '8312')
2025-07-28 14:56:58 (8008): Reporting VM Process ID to BOINC.
2025-07-28 14:56:58 (8008): Guest Log: BIOS: VirtualBox 6.0.14
2025-07-28 14:56:58 (8008): Guest Log: CPUID EDX: 0x178bfbff
2025-07-28 14:56:58 (8008): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-28 14:56:58 (8008): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-28 14:56:58 (8008): Detected: Web Application Enabled (http://localhost:57498)
2025-07-28 14:56:58 (8008): Preference change detected
2025-07-28 14:56:58 (8008): Setting CPU throttle for VM. (100%)
2025-07-28 14:56:58 (8008): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-28 14:57:00 (8008): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-28 14:57:00 (8008): Guest Log: BIOS: Booting from Hard Disk...
2025-07-28 14:57:03 (8008): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-28 14:57:03 (8008): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-28 14:57:03 (8008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-28 14:57:16 (8008): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-28 14:57:16 (8008): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-28 14:57:38 (8008): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-28 14:57:38 (8008): Guest Log: 00:00:00.000342 main     Log opened 2025-07-28T14:57:36.820129000Z
2025-07-28 14:57:38 (8008): Guest Log: 00:00:00.000629 main     OS Product: Linux
2025-07-28 14:57:38 (8008): Guest Log: 00:00:00.000772 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-28 14:57:38 (8008): Guest Log: 00:00:00.000842 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-28 14:57:38 (8008): Guest Log: 00:00:00.000900 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-28 14:57:38 (8008): Guest Log: 00:00:00.000902 main     Process ID: 1373
2025-07-28 14:57:38 (8008): Guest Log: 00:00:00.000903 main     Package type: LINUX_64BITS_GENERIC
2025-07-28 14:57:38 (8008): Guest Log: 00:00:00.002754 main     5.2.32 r132073 started. Verbose level = 0
2025-07-28 14:57:39 (8008): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-28 14:57:39 (8008): Guest Log: [INFO] Mounting shared directory
2025-07-28 14:57:39 (8008): Guest Log: [INFO] Checking for init_data.xml
2025-07-28 14:57:48 (8008): Guest Log: 00:00:10.009429 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 788 838 119 000ns (GuestNow=1 753 685 867 989 010 000 ns GuestLast=1 753 714 656 827 129 000 ns fSetTimeLastLoop=true )
2025-07-28 14:58:04 (8008): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-28 14:58:04 (8008): Guest Log: [INFO] Detected branch: prod
2025-07-28 14:58:04 (8008): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-28 14:58:04 (8008): Guest Log: Copying input files
2025-07-28 14:58:06 (8008): Guest Log: Copied input files into RunAtlas.
2025-07-28 14:58:07 (8008): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-28 14:58:07 (8008): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-28 14:58:07 (8008): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-28 14:58:07 (8008): Guest Log: Further information can be found at the LHC@home message board.
2025-07-28 14:58:45 (8008): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-28 14:58:51 (8008): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-28 14:58:51 (8008): Guest Log: 2.6.3.0 1665 0 30192 148839 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-28 14:58:55 (8008): Guest Log: copied the webapp to /var/www
2025-07-28 14:58:55 (8008): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-28 14:58:55 (8008): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-28 14:58:56 (8008): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-28 14:58:56 (8008): Guest Log:  *** Starting ATLAS job. (PandaID=6748122069 taskID=45758961) ***
2025-07-28 15:15:08 (8008): Guest Log:  *** Job finished ***
2025-07-28 15:15:08 (8008): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:14:46,808 | INFO     | all workflow threads have been joined
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:14:46,808 | INFO     | end of generic workflow (traces error code: 0)
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:14:46,808 | INFO     | traces error code: 0
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:14:46,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:05,977 | INFO     | PID=6032 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:05,979 | INFO     | found 0 job(s) in 20 queues
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:05,980 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:05,980 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:05,980 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:05,980 | INFO     | [monitor] control thread has ended
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:06,149 [wrapper] ==== pilot stdout END ====
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:06,168 [wrapper] ==== wrapper stdout RESUME ====
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:06,185 [wrapper] pilotpid: 6032
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:06,205 [wrapper] Pilot exit status: 0
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:06,345 [wrapper] pandaids: 6748122069
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:06,446 [wrapper] cleanup supervisor_pilot  6038 6033
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:06,478 [wrapper] Test setup, not cleaning
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:06,492 [wrapper] apfmon messages muted
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:06,508 [wrapper] ==== wrapper stdout END ====
2025-07-28 15:15:08 (8008): Guest Log: 2025-07-28 07:15:06,523 [wrapper] ==== wrapper stderr END ====
2025-07-28 15:15:08 (8008): Guest Log:  *** Error codes and diagnostics ***
2025-07-28 15:15:08 (8008): Guest Log:     "exeErrorCode": 65,
2025-07-28 15:15:08 (8008): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL Unable to connect to the Geometry DB\"",
2025-07-28 15:15:08 (8008): Guest Log:     "pilotErrorCode": 1305,
2025-07-28 15:15:08 (8008): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL Unable to co",
2025-07-28 15:15:08 (8008): Guest Log:  *** Listing of results directory ***
2025-07-28 15:15:08 (8008): Guest Log: total 4052
2025-07-28 15:15:08 (8008): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 27 20:42 pilot3.tar.gz
2025-07-28 15:15:08 (8008): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 27 20:54 runpilot2-wrapper.sh
2025-07-28 15:15:08 (8008): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 27 20:54 queuedata.json
2025-07-28 15:15:08 (8008): Guest Log: -rwxr-xr-x. 1 atlas atlas    6001 Jul 28 06:58 init_data.xml
2025-07-28 15:15:08 (8008): Guest Log: -rwxr-xr-x. 1 atlas atlas  542903 Jul 28 06:58 input.tar.gz
2025-07-28 15:15:08 (8008): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 28 06:58 start_atlas.sh
2025-07-28 15:15:08 (8008): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 28 06:58 EVNT.45758956._000002.pool.root.1 -> /data/./ATLAS.root_0
2025-07-28 15:15:08 (8008): Guest Log: -rw-r--r--. 1 atlas atlas    2638 Jul 28 06:58 pandaJob.out
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas  978460 Jul 28 07:00 agis_schedconf.cvmfs.json
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas 1593052 Jul 28 07:00 agis_ddmendpoints.agis.ALL.json
2025-07-28 15:15:08 (8008): Guest Log: drwx------. 4 atlas atlas    4096 Jul 28 07:01 pilot3
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas    1019 Jul 28 07:12 memory_monitor_summary.json
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas   49131 Jul 28 07:12 log.45758961._000047.job.log.tgz.1
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas   10652 Jul 28 07:14 heartbeat.json
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas      95 Jul 28 07:15 pilot_heartbeat.json
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas     744 Jul 28 07:15 pilotlog.txt
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas  125120 Jul 28 07:15 log.45758961._000047.job.log.1
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas     188 Jul 28 07:15 output.list
2025-07-28 15:15:08 (8008): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 28 07:15 runtime_log
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas  194560 Jul 28 07:15 result.tar.gz
2025-07-28 15:15:08 (8008): Guest Log: -rw-------. 1 atlas atlas     645 Jul 28 07:15 YqPMDm7YN07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuRWLDmCafgUm.diag
2025-07-28 15:15:08 (8008): Guest Log: -rw-r--r--. 1 atlas atlas    8452 Jul 28 07:15 runtime_log.err
2025-07-28 15:15:08 (8008): Guest Log: Looking for outputfile HITS.45758961._000047.pool.root.1
2025-07-28 15:15:08 (8008): Guest Log: No HITS file was produced
2025-07-28 15:15:08 (8008): Guest Log: Successfully finished the ATLAS job!
2025-07-28 15:15:08 (8008): Guest Log: Copying the results back to the shared directory!
2025-07-28 15:15:08 (8008): Guest Log:  *** Contents of shared directory: ***
2025-07-28 15:15:09 (8008): Guest Log: total 234316
2025-07-28 15:15:09 (8008): Guest Log: -rwxrwxrwx. 1 root root 239172616 Jul 28 06:56 ATLAS.root_0
2025-07-28 15:15:09 (8008): Guest Log: -rwxrwxrwx. 1 root root      6001 Jul 28 06:56 init_data.xml
2025-07-28 15:15:09 (8008): Guest Log: -rwxrwxrwx. 1 root root    542903 Jul 28 02:35 input.tar.gz
2025-07-28 15:15:09 (8008): Guest Log: -rwxrwxrwx. 1 root root    194560 Jul 28 07:15 result.tar.gz
2025-07-28 15:15:09 (8008): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 28 02:35 start_atlas.sh
2025-07-28 15:15:09 (8008): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-28 15:15:09 (8008): VM Completion File Detected.
2025-07-28 15:15:09 (8008): Powering off VM.
2025-07-28 15:15:10 (8008): Successfully stopped VM.
2025-07-28 15:15:10 (8008): Deregistering VM. (boinc_104be4e5ccabac9b, slot#0)
2025-07-28 15:15:10 (8008): Removing network bandwidth throttle group from VM.
2025-07-28 15:15:10 (8008): Removing VM from VirtualBox.
15:15:15 (8008): called boinc_finish(0)

</stderr_txt>
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