Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:24:41 (2325089): wrapper (7.7.26015): starting
22:24:41 (2325089): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 22:24:41] Arguments: --nthreads 8
[2025-07-27 22:24:41] Threads: 8
[2025-07-27 22:24:41] Checking for CVMFS
[2025-07-27 22:24:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:24:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:24:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:24:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:24:42] 2.13.1.0 5097 14814 196784 148832 1 196 24526136 40960000 10196 16776704 0 47123255 99.935 17674285 43560 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:24:42] CVMFS is ok
[2025-07-27 22:24:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:24:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:24:42] Further information can be found at the LHC@home message board.
[2025-07-27 22:24:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:24:42] Checking for apptainer binary...
[2025-07-27 22:24:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:24:42] Running /usr/bin/apptainer --version
[2025-07-27 22:24:42] apptainer version 1.4.1-1.el9
[2025-07-27 22:24:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:24:42] c-212-6.aglt2.org
[2025-07-27 22:24:42] apptainer works
[2025-07-27 22:24:42] Set ATHENA_PROC_NUMBER=8
[2025-07-27 22:24:42] Set ATHENA_CORE_NUMBER=8
[2025-07-27 22:24:42] Starting ATLAS job with PandaID=6747578820
[2025-07-27 22:24:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:52:32]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:52:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:52:32]  replicas=None
[2025-07-27 23:52:32]  scope=mc23_13p6TeV
[2025-07-27 23:52:32]  status=None
[2025-07-27 23:52:32]  status_code=0
[2025-07-27 23:52:32]  storage_token=
[2025-07-27 23:52:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747578820/log.45743349._053413.job.log.tgz.1
[2025-07-27 23:52:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5d/c2/log.45743349._053413.job.log.tgz.1
[2025-07-27 23:52:32]  workdir=None
[2025-07-27 23:52:32] ]
[2025-07-27 23:52:32] 2025-07-28 03:51:52,061 | INFO     | transferring file log.45743349._053413.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747578820/log.45743349._053413.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 23:52:32] 2025-07-28 03:51:52,062 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747578820/log.45743349._053413.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053413.job
[2025-07-27 23:52:32] 2025-07-28 03:51:52,083 | INFO     | adding to output.list: log.45743349._053413.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5d/c2/log.45743349._053413.job.log.tg
[2025-07-27 23:52:32] 2025-07-28 03:51:52,084 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:52:32] 2025-07-28 03:51:52,084 | INFO     | summary of transferred files:
[2025-07-27 23:52:32] 2025-07-28 03:51:52,084 | INFO     |  -- lfn=log.45743349._053413.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:52:32] 2025-07-28 03:51:52,085 | INFO     | stage-out finished correctly
[2025-07-27 23:52:32] 2025-07-28 03:51:53,357 | WARNING  | process 2336274 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 23:52:32] 2025-07-28 03:51:53,357 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747578820/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:52:32] 2025-07-28 03:51:53,723 | INFO     | number of running child processes to parent process 2336274: 1
[2025-07-27 23:52:32] 2025-07-28 03:51:53,723 | INFO     | maximum number of monitored processes: 6
[2025-07-27 23:52:32] 2025-07-28 03:51:53,749 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:52:32] 2025-07-28 03:51:54,767 | INFO     | job 6747578820 has state=finished
[2025-07-27 23:52:32] 2025-07-28 03:51:54,768 | INFO     | preparing for final server update for job 6747578820 in state='finished'
[2025-07-27 23:52:32] 2025-07-28 03:51:54,824 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 23:52:32] 2025-07-28 03:51:54,824 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:52:32] 2025-07-28 03:51:54,824 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:52:32] 2025-07-28 03:51:54,824 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:52:32] 2025-07-28 03:51:54,824 | INFO     | job 6747578820 has finished - writing final server update
[2025-07-27 23:52:32] 2025-07-28 03:51:54,825 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:52:32] 2025-07-28 03:51:54,825 | INFO     | executing command: lscpu
[2025-07-27 23:52:32] 2025-07-28 03:51:54,901 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:52:32] 2025-07-28 03:51:56,227 | INFO     | monitor loop #381: job 0:6747578820 is in state 'finished'
[2025-07-27 23:52:32] 2025-07-28 03:51:56,227 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:52:32] 2025-07-28 03:51:58,731 | INFO     | monitor loop #382: job 0:6747578820 is in state 'finished'
[2025-07-27 23:52:32] 2025-07-28 03:51:58,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:52:32] 2025-07-28 03:52:00,491 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 23:52:32] 2025-07-28 03:52:00,497 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3263.8189583333333
[2025-07-27 23:52:32] 2025-07-28 03:52:00,506 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747578820/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:52:32] 2025-07-28 03:52:00,508 | INFO     | extracted standard info from prmon json
[2025-07-27 23:52:32] 2025-07-28 03:52:00,508 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:52:32] 2025-07-28 03:52:00,508 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:52:32] 2025-07-28 03:52:00,508 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:52:32] 2025-07-28 03:52:00,508 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:52:32] 2025-07-28 03:52:00,510 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:52:32] 2025-07-28 03:52:00,510 | INFO     | sum of square deviations: 147126479.5
[2025-07-27 23:52:32] 2025-07-28 03:52:00,511 | INFO     | sum of deviations: -3224925582.499999
[2025-07-27 23:52:32] 2025-07-28 03:52:00,511 | INFO     | mean x: 1753672176.5
[2025-07-27 23:52:32] 2025-07-28 03:52:00,511 | INFO     | mean y: 2557930.4487179485
[2025-07-27 23:52:32] 2025-07-28 03:52:00,511 | INFO     | -- intersect: 38442016854.04311
[2025-07-27 23:52:32] 2025-07-28 03:52:00,511 | INFO     | intersect: 38442016854.04311
[2025-07-27 23:52:32] 2025-07-28 03:52:00,511 | INFO     | chi2: 0.0029915141273347714
[2025-07-27 23:52:32] 2025-07-28 03:52:00,511 | INFO     | -- intersect: 38442016854.04311
[2025-07-27 23:52:32] 2025-07-28 03:52:00,511 | INFO     | current memory leak: -21.92 B/s (using 78 data points, chi2=0.00)
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | could have reported an average CPU frequency of 3273 MHz (6 samples)
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | ..............................
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | . Timing measurements:
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | . get job = 0 s
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | . initial setup = 2 s
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | . payload setup = 7 s
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | . stage-in = 0 s
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | . payload execution = 5190 s
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | . stage-out = 0 s
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | . log creation = 0 s
[2025-07-27 23:52:32] 2025-07-28 03:52:00,512 | INFO     | ..............................
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | 
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | job summary report
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | --------------------------------------------------
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | PanDA job id: 6747578820
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | task id: 45743349
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | errors: (none)
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | pilot state: finished 
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | transexitcode: 0
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | exeerrorcode: 0
[2025-07-27 23:52:32] 2025-07-28 03:52:00,598 | INFO     | exeerrordiag: 
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | exitcode: 0
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | exitmsg: OK
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | cpuconsumptiontime: 35123 s
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | nevents: 400
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | neventsw: 0
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | pid: 2336274
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | pgrp: 2336274
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | corecount: 8
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | event service: False
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | sizes: {0: 2397304, 1: 2397503, 5: 2397765, 11: 2397821, 5201: 2424045, 5202: 2433043, 5204: 2433227, 5211: 2433421}
[2025-07-27 23:52:32] 2025-07-28 03:52:00,599 | INFO     | --------------------------------------------------
[2025-07-27 23:52:32] 2025-07-28 03:52:00,600 | INFO     | 
[2025-07-27 23:52:32] 2025-07-28 03:52:00,600 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 23:52:32] 2025-07-28 03:52:00,623 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,623 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,624 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,625 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,625 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,625 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,625 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:52:32] 2025-07-28 03:52:00,625 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,625 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:52:32] 2025-07-28 03:52:00,625 | INFO     | job 6747578820 has completed (purged errors)
[2025-07-27 23:52:32] 2025-07-28 03:52:00,625 | INFO     | overall cleanup function is called
[2025-07-27 23:52:32] 2025-07-28 03:52:01,633 | INFO     | --- collectZombieJob: --- 10, [2336274]
[2025-07-27 23:52:32] 2025-07-28 03:52:01,633 | INFO     | zombie collector waiting for pid 2336274
[2025-07-27 23:52:32] 2025-07-28 03:52:01,633 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:52:32] 2025-07-28 03:52:01,633 | INFO     | collected zombie processes
[2025-07-27 23:52:32] 2025-07-28 03:52:01,633 | INFO     | will attempt to kill all subprocesses of pid=2336274
[2025-07-27 23:52:32] 2025-07-28 03:52:02,012 | INFO     | process IDs to be killed: [2336274] (in reverse order)
[2025-07-27 23:52:32] 2025-07-28 03:52:02,134 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:52:32] 2025-07-28 03:52:02,135 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:52:32] 2025-07-28 03:52:02,149 | INFO     | did not find any defunct processes belonging to 2336274
[2025-07-27 23:52:32] 2025-07-28 03:52:02,159 | INFO     | did not find any defunct processes belonging to 2336274
[2025-07-27 23:52:32] 2025-07-28 03:52:02,160 | INFO     | ready for new job
[2025-07-27 23:52:32] 2025-07-28 03:52:02,160 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:52:32] 2025-07-28 03:52:02,161 | INFO     | ***************************************
[2025-07-27 23:52:32] 2025-07-28 03:52:02,161 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:52:32] 2025-07-28 03:52:02,161 | INFO     | ***************************************
[2025-07-27 23:52:32] 2025-07-28 03:52:02,161 | INFO     | 
[2025-07-27 23:52:32] 2025-07-28 03:52:02,166 | INFO     | architecture information:
[2025-07-27 23:52:32] 2025-07-28 03:52:02,166 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:52:32] 2025-07-28 03:52:02,183 | INFO     | cat /etc/os-release:
[2025-07-27 23:52:32] NAME="CentOS Linux"
[2025-07-27 23:52:32] VERSION="7 (Core)"
[2025-07-27 23:52:32] ID="centos"
[2025-07-27 23:52:32] ID_LIKE="rhel fedora"
[2025-07-27 23:52:32] VERSION_ID="7"
[2025-07-27 23:52:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:52:32] ANSI_COLOR="0;31"
[2025-07-27 23:52:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:52:32] HOME_URL="https://www.centos.org/"
[2025-07-27 23:52:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:52:32] 
[2025-07-27 23:52:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:52:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:52:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:52:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:52:32] 
[2025-07-27 23:52:32] 2025-07-28 03:52:02,183 | INFO     | ***************************************
[2025-07-27 23:52:32] 2025-07-28 03:52:02,686 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 23:52:32] 2025-07-28 03:52:02,703 | INFO     | sufficient remaining disk space (123947974656 B)
[2025-07-27 23:52:32] 2025-07-28 03:52:02,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:52:32] 2025-07-28 03:52:02,704 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:52:32] 2025-07-28 03:52:02,704 | INFO     | update_server=False
[2025-07-27 23:52:32] 2025-07-28 03:52:02,704 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:52:32] 2025-07-28 03:52:02,704 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:52:32] 2025-07-28 03:52:02,704 | INFO     | aborting loop
[2025-07-27 23:52:32] 2025-07-28 03:52:02,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:52:32] 2025-07-28 03:52:03,304 | INFO     | all data control threads have been joined
[2025-07-27 23:52:32] 2025-07-28 03:52:03,621 | INFO     | all job control threads have been joined
[2025-07-27 23:52:32] 2025-07-28 03:52:03,709 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:03,710 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:03,724 | INFO     | all payload control threads have been joined
[2025-07-27 23:52:32] 2025-07-28 03:52:03,925 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:04,258 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:04,310 | INFO     | [data] control thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:04,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:52:32] 2025-07-28 03:52:04,533 | INFO     | [job] validate thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:04,626 | INFO     | [job] control thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:04,710 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:04,729 | INFO     | [payload] control thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:05,028 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:05,029 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:05,123 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:05,182 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:05,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:52:32] 2025-07-28 03:52:06,609 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:08,323 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:13,515 | INFO     | job.realtimelogging is not enabled
[2025-07-27 23:52:32] 2025-07-28 03:52:14,521 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:52:32] 2025-07-28 03:52:14,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139782974650176)>', '<ExcThread(monitor, started 139782126565120)>']
[2025-07-27 23:52:32] 2025-07-28 03:52:19,576 | INFO     | all workflow threads have been joined
[2025-07-27 23:52:32] 2025-07-28 03:52:19,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:52:32] 2025-07-28 03:52:19,576 | INFO     | traces error code: 0
[2025-07-27 23:52:32] 2025-07-28 03:52:19,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:52:32] 2025-07-28 03:52:32,369 | INFO     | PID=2328672 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 23:52:32] 2025-07-28 03:52:32,369 | INFO     | .. there are 17 such processes running
[2025-07-27 23:52:32] 2025-07-28 03:52:32,369 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:52:32] 2025-07-28 03:52:32,370 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:52:32] 2025-07-28 03:52:32,370 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:52:32] 2025-07-28 03:52:32,370 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:52:32] 2025-07-28 03:52:32,370 | INFO     | [monitor] control thread has ended
[2025-07-27 23:52:32] 2025-07-28 03:52:32,461 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:52:32] 2025-07-28 03:52:32,464 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:52:32] 2025-07-28 03:52:32,469 [wrapper] pilotpid: 2328672
[2025-07-27 23:52:32] 2025-07-28 03:52:32,474 [wrapper] Pilot exit status: 0
[2025-07-27 23:52:32] 2025-07-28 03:52:32,487 [wrapper] pandaids: 6747578820
[2025-07-27 23:52:32] 2025-07-28 03:52:32,577 [wrapper] cleanup supervisor_pilot 2577706 2328673
[2025-07-27 23:52:32] 2025-07-28 03:52:32,583 [wrapper] Test setup, not cleaning
[2025-07-27 23:52:32] 2025-07-28 03:52:32,589 [wrapper] apfmon messages muted
[2025-07-27 23:52:32] 2025-07-28 03:52:32,592 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:52:32] 2025-07-28 03:52:32,596 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:52:32]  *** Error codes and diagnostics ***
[2025-07-27 23:52:32]     "exeErrorCode": 0,
[2025-07-27 23:52:32]     "exeErrorDiag": "",
[2025-07-27 23:52:32]     "pilotErrorCode": 0,
[2025-07-27 23:52:32]     "pilotErrorDiag": "",
[2025-07-27 23:52:32]  *** Listing of results directory ***
[2025-07-27 23:52:32] total 351984
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:39 pilot3.tar.gz
[2025-07-27 23:52:32] -rwx------. 1 boincer umatlas     36292 Jul 27 14:04 runpilot2-wrapper.sh
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:04 queuedata.json
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:52:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:24 run_atlas
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:24 job.xml
[2025-07-27 23:52:32] -rw-r--r--. 2 boincer umatlas 143556420 Jul 27 22:24 EVNT.45743347._002923.pool.root.1
[2025-07-27 23:52:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:24 start_atlas.sh
[2025-07-27 23:52:32] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:24 shared
[2025-07-27 23:52:32] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 22:24 input.tar.gz
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:24 boinc_lockfile
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 22:24 pandaJob.out
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas    980125 Jul 27 22:24 agis_schedconf.cvmfs.json
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:24 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:52:32] drwx------. 4 boincer umatlas      4096 Jul 27 22:24 pilot3
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas      6946 Jul 27 23:49 init_data.xml
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas 211380062 Jul 27 23:51 HITS.45743349._053413.pool.root.1
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas       529 Jul 27 23:51 boinc_task_state.xml
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas      1027 Jul 27 23:51 memory_monitor_summary.json
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas    306048 Jul 27 23:51 log.45743349._053413.job.log.tgz.1
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas        95 Jul 27 23:51 pilot_heartbeat.json
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas      7764 Jul 27 23:52 heartbeat.json
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas        27 Jul 27 23:52 wrapper_checkpoint.txt
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 23:52 boinc_mmap_file
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas       823 Jul 27 23:52 pilotlog.txt
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas    504864 Jul 27 23:52 log.45743349._053413.job.log.1
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas       357 Jul 27 23:52 output.list
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas       620 Jul 27 23:52 runtime_log
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas    829440 Jul 27 23:52 result.tar.gz
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 23:52 runtime_log.err
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas       651 Jul 27 23:52 BM1LDm0uK07n9Rq4apOajLDm4fhM0noT9bVof3QYDmKt2KDmNKCeMo.diag
[2025-07-27 23:52:32] -rw-r--r--. 1 boincer umatlas     21922 Jul 27 23:52 stderr.txt
[2025-07-27 23:52:32] HITS file was successfully produced:
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas 211380062 Jul 27 23:51 shared/HITS.pool.root.1
[2025-07-27 23:52:32]  *** Contents of shared directory: ***
[2025-07-27 23:52:32] total 347984
[2025-07-27 23:52:32] -rw-r--r--. 2 boincer umatlas 143556420 Jul 27 22:24 ATLAS.root_0
[2025-07-27 23:52:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:24 start_atlas.sh
[2025-07-27 23:52:32] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 22:24 input.tar.gz
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas 211380062 Jul 27 23:51 HITS.pool.root.1
[2025-07-27 23:52:32] -rw-------. 1 boincer umatlas    829440 Jul 27 23:52 result.tar.gz
23:52:34 (2325089): run_atlas exited; CPU time 35267.708137
23:52:34 (2325089): called boinc_finish(0)

</stderr_txt>
]]>

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