Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:21:28 (4071000): wrapper (7.7.26015): starting
22:21:28 (4071000): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 22:21:28] Arguments: --nthreads 8
[2025-07-27 22:21:28] Threads: 8
[2025-07-27 22:21:28] Checking for CVMFS
[2025-07-27 22:21:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:21:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:21:29] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:21:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:21:29] 2.13.1.0 672044 14990 153820 148832 2 69 24595976 40960000 10242 16776704 0 49299440 99.889 26279662 43593 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:21:29] CVMFS is ok
[2025-07-27 22:21:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:21:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:21:29] Further information can be found at the LHC@home message board.
[2025-07-27 22:21:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:21:29] Checking for apptainer binary...
[2025-07-27 22:21:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:21:29] Running /usr/bin/apptainer --version
[2025-07-27 22:21:29] apptainer version 1.4.1-1.el9
[2025-07-27 22:21:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:21:29] c-212-3.aglt2.org
[2025-07-27 22:21:29] apptainer works
[2025-07-27 22:21:29] Set ATHENA_PROC_NUMBER=8
[2025-07-27 22:21:29] Set ATHENA_CORE_NUMBER=8
[2025-07-27 22:21:29] Starting ATLAS job with PandaID=6744926059
[2025-07-27 22:21:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:42:20]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:42:20]  protocol_id=None
[2025-07-27 23:42:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:42:20]  replicas=None
[2025-07-27 23:42:20]  scope=mc23_13p6TeV
[2025-07-27 23:42:20]  status=None
[2025-07-27 23:42:20]  status_code=0
[2025-07-27 23:42:20]  storage_token=
[2025-07-27 23:42:20]  surl=/tmp/boinchome/slots/9/PanDA_Pilot-6744926059/log.45743349._007786.job.log.tgz.1
[2025-07-27 23:42:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/de/log.45743349._007786.job.log.tgz.1
[2025-07-27 23:42:20]  workdir=None
[2025-07-27 23:42:20] ]
[2025-07-27 23:42:20] 2025-07-28 03:41:42,510 | INFO     | transferring file log.45743349._007786.job.log.tgz.1 from /tmp/boinchome/slots/9/PanDA_Pilot-6744926059/log.45743349._007786.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 23:42:20] 2025-07-28 03:41:42,510 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/9/PanDA_Pilot-6744926059/log.45743349._007786.job.log.tgz.1 /tmp/boinchome/slots/9/log.45743349._007786.job
[2025-07-27 23:42:20] 2025-07-28 03:41:42,538 | INFO     | adding to output.list: log.45743349._007786.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/de/log.45743349._007786.job.log.tg
[2025-07-27 23:42:20] 2025-07-28 03:41:42,539 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:42:20] 2025-07-28 03:41:42,539 | INFO     | summary of transferred files:
[2025-07-27 23:42:20] 2025-07-28 03:41:42,539 | INFO     |  -- lfn=log.45743349._007786.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:42:20] 2025-07-28 03:41:42,539 | INFO     | stage-out finished correctly
[2025-07-27 23:42:20] 2025-07-28 03:41:42,640 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:42:20] 2025-07-28 03:41:42,722 | INFO     | job 6744926059 has state=finished
[2025-07-27 23:42:20] 2025-07-28 03:41:42,722 | INFO     | preparing for final server update for job 6744926059 in state='finished'
[2025-07-27 23:42:20] 2025-07-28 03:41:42,723 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:42:20] 2025-07-28 03:41:42,723 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:42:20] 2025-07-28 03:41:42,723 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:42:20] 2025-07-28 03:41:42,723 | INFO     | job 6744926059 has finished - writing final server update
[2025-07-27 23:42:20] 2025-07-28 03:41:42,723 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:42:20] 2025-07-28 03:41:42,724 | INFO     | executing command: lscpu
[2025-07-27 23:42:20] 2025-07-28 03:41:42,784 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:42:20] 2025-07-28 03:41:43,771 | WARNING  | process 4081248 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 23:42:20] 2025-07-28 03:41:43,773 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6744926059/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:42:20] 2025-07-28 03:41:44,121 | INFO     | number of running child processes to parent process 4081248: 1
[2025-07-27 23:42:20] 2025-07-28 03:41:44,122 | INFO     | maximum number of monitored processes: 6
[2025-07-27 23:42:20] 2025-07-28 03:41:46,625 | INFO     | monitor loop #351: job 0:6744926059 is in state 'finished'
[2025-07-27 23:42:20] 2025-07-28 03:41:46,625 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:42:20] 2025-07-28 03:41:46,757 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 23:42:20] 2025-07-28 03:41:46,763 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3288.175333333334
[2025-07-27 23:42:20] 2025-07-28 03:41:46,781 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6744926059/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:42:20] 2025-07-28 03:41:46,781 | INFO     | extracted standard info from prmon json
[2025-07-27 23:42:20] 2025-07-28 03:41:46,781 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:42:20] 2025-07-28 03:41:46,781 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:42:20] 2025-07-28 03:41:46,782 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:42:20] 2025-07-28 03:41:46,782 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:42:20] 2025-07-28 03:41:46,783 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:42:20] 2025-07-28 03:41:46,783 | INFO     | sum of square deviations: 115715658.0
[2025-07-27 23:42:20] 2025-07-28 03:41:46,784 | INFO     | sum of deviations: -3120182939.9999995
[2025-07-27 23:42:20] 2025-07-28 03:41:46,784 | INFO     | mean x: 1753671800.5
[2025-07-27 23:42:20] 2025-07-28 03:41:46,784 | INFO     | mean y: 2559401.1666666665
[2025-07-27 23:42:20] 2025-07-28 03:41:46,784 | INFO     | -- intersect: 47288958915.73523
[2025-07-27 23:42:20] 2025-07-28 03:41:46,784 | INFO     | intersect: 47288958915.73523
[2025-07-27 23:42:20] 2025-07-28 03:41:46,784 | INFO     | chi2: 0.0016064361657524033
[2025-07-27 23:42:20] 2025-07-28 03:41:46,784 | INFO     | -- intersect: 47288958915.73523
[2025-07-27 23:42:20] 2025-07-28 03:41:46,784 | INFO     | current memory leak: -26.96 B/s (using 72 data points, chi2=0.00)
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | could have reported an average CPU frequency of 3291 MHz (6 samples)
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | ..............................
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | . Timing measurements:
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | . get job = 0 s
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | . initial setup = 2 s
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | . payload setup = 7 s
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | . stage-in = 0 s
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | . payload execution = 4772 s
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | . stage-out = 0 s
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | . log creation = 0 s
[2025-07-27 23:42:20] 2025-07-28 03:41:46,785 | INFO     | ..............................
[2025-07-27 23:42:20] 2025-07-28 03:41:46,953 | INFO     | 
[2025-07-27 23:42:20] 2025-07-28 03:41:46,953 | INFO     | job summary report
[2025-07-27 23:42:20] 2025-07-28 03:41:46,953 | INFO     | --------------------------------------------------
[2025-07-27 23:42:20] 2025-07-28 03:41:46,953 | INFO     | PanDA job id: 6744926059
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | task id: 45743349
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | errors: (none)
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | pilot state: finished 
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | transexitcode: 0
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | exeerrorcode: 0
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | exeerrordiag: 
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | exitcode: 0
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | exitmsg: OK
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | cpuconsumptiontime: 34882 s
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | nevents: 400
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | neventsw: 0
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | pid: 4081248
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | pgrp: 4081248
[2025-07-27 23:42:20] 2025-07-28 03:41:46,954 | INFO     | corecount: 8
[2025-07-27 23:42:20] 2025-07-28 03:41:46,955 | INFO     | event service: False
[2025-07-27 23:42:20] 2025-07-28 03:41:46,955 | INFO     | sizes: {0: 2397298, 1: 2397497, 6: 2397759, 11: 2397787, 4784: 2424068, 4786: 2433250, 4790: 2433388}
[2025-07-27 23:42:20] 2025-07-28 03:41:46,955 | INFO     | --------------------------------------------------
[2025-07-27 23:42:20] 2025-07-28 03:41:46,955 | INFO     | 
[2025-07-27 23:42:20] 2025-07-28 03:41:46,955 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-07-27 23:42:20] 2025-07-28 03:41:47,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,002 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,003 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:42:20] 2025-07-28 03:41:47,003 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,003 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:42:20] 2025-07-28 03:41:47,003 | INFO     | job 6744926059 has completed (purged errors)
[2025-07-27 23:42:20] 2025-07-28 03:41:47,003 | INFO     | overall cleanup function is called
[2025-07-27 23:42:20] 2025-07-28 03:41:48,013 | INFO     | --- collectZombieJob: --- 10, [4081248]
[2025-07-27 23:42:20] 2025-07-28 03:41:48,013 | INFO     | zombie collector waiting for pid 4081248
[2025-07-27 23:42:20] 2025-07-28 03:41:48,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:42:20] 2025-07-28 03:41:48,013 | INFO     | collected zombie processes
[2025-07-27 23:42:20] 2025-07-28 03:41:48,013 | INFO     | will attempt to kill all subprocesses of pid=4081248
[2025-07-27 23:42:20] 2025-07-28 03:41:48,386 | INFO     | process IDs to be killed: [4081248] (in reverse order)
[2025-07-27 23:42:20] 2025-07-28 03:41:48,513 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:42:20] 2025-07-28 03:41:48,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:42:20] 2025-07-28 03:41:48,530 | INFO     | did not find any defunct processes belonging to 4081248
[2025-07-27 23:42:20] 2025-07-28 03:41:48,544 | INFO     | did not find any defunct processes belonging to 4081248
[2025-07-27 23:42:20] 2025-07-28 03:41:48,544 | INFO     | ready for new job
[2025-07-27 23:42:20] 2025-07-28 03:41:48,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:42:20] 2025-07-28 03:41:48,548 | INFO     | ***************************************
[2025-07-27 23:42:20] 2025-07-28 03:41:48,548 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:42:20] 2025-07-28 03:41:48,548 | INFO     | ***************************************
[2025-07-27 23:42:20] 2025-07-28 03:41:48,548 | INFO     | 
[2025-07-27 23:42:20] 2025-07-28 03:41:48,557 | INFO     | architecture information:
[2025-07-27 23:42:20] 2025-07-28 03:41:48,558 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:42:20] 2025-07-28 03:41:48,585 | INFO     | cat /etc/os-release:
[2025-07-27 23:42:20] NAME="CentOS Linux"
[2025-07-27 23:42:20] VERSION="7 (Core)"
[2025-07-27 23:42:20] ID="centos"
[2025-07-27 23:42:20] ID_LIKE="rhel fedora"
[2025-07-27 23:42:20] VERSION_ID="7"
[2025-07-27 23:42:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:42:20] ANSI_COLOR="0;31"
[2025-07-27 23:42:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:42:20] HOME_URL="https://www.centos.org/"
[2025-07-27 23:42:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:42:20] 
[2025-07-27 23:42:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:42:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:42:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:42:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:42:20] 
[2025-07-27 23:42:20] 2025-07-28 03:41:48,586 | INFO     | ***************************************
[2025-07-27 23:42:20] 2025-07-28 03:41:49,089 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-07-27 23:42:20] 2025-07-28 03:41:49,111 | INFO     | sufficient remaining disk space (124406202368 B)
[2025-07-27 23:42:20] 2025-07-28 03:41:49,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:42:20] 2025-07-28 03:41:49,111 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:42:20] 2025-07-28 03:41:49,111 | INFO     | update_server=False
[2025-07-27 23:42:20] 2025-07-28 03:41:49,112 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:42:20] 2025-07-28 03:41:49,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:42:20] 2025-07-28 03:41:49,113 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:42:20] 2025-07-28 03:41:49,130 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 23:42:20] 2025-07-28 03:41:49,134 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 23:42:20] 2025-07-28 03:41:49,134 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:42:20] 2025-07-28 03:41:49,135 | INFO     | will abort loop
[2025-07-27 23:42:20] 2025-07-28 03:41:49,171 | INFO     | all data control threads have been joined
[2025-07-27 23:42:20] 2025-07-28 03:41:49,558 | INFO     | all job control threads have been joined
[2025-07-27 23:42:20] 2025-07-28 03:41:50,057 | INFO     | all payload control threads have been joined
[2025-07-27 23:42:20] 2025-07-28 03:41:50,117 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:50,140 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:50,178 | INFO     | [data] control thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:50,251 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:50,291 | INFO     | [job] validate thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:50,339 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:50,455 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:50,559 | INFO     | [job] control thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:51,023 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:51,061 | INFO     | [payload] control thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:51,119 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:51,166 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:51,374 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:51,507 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:51,880 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:42:20] 2025-07-28 03:41:52,885 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:53,115 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:42:20] 2025-07-28 03:41:54,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038146443072)>', '<ExcThread(monitor, started 140037517723392)>']
[2025-07-27 23:42:20] 2025-07-28 03:41:59,482 | INFO     | all workflow threads have been joined
[2025-07-27 23:42:20] 2025-07-28 03:41:59,482 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:42:20] 2025-07-28 03:41:59,482 | INFO     | traces error code: 0
[2025-07-27 23:42:20] 2025-07-28 03:41:59,482 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:42:20] 2025-07-28 03:42:18,929 | INFO     | 4810s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 23:42:20] 2025-07-28 03:42:20,408 | INFO     | PID=4074586 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 23:42:20] 2025-07-28 03:42:20,408 | INFO     | .. there are 13 such processes running
[2025-07-27 23:42:20] 2025-07-28 03:42:20,410 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:42:20] 2025-07-28 03:42:20,410 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:42:20] 2025-07-28 03:42:20,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:42:20] 2025-07-28 03:42:20,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:42:20] 2025-07-28 03:42:20,410 | INFO     | [monitor] control thread has ended
[2025-07-27 23:42:20] 2025-07-28 03:42:20,524 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:42:20] 2025-07-28 03:42:20,528 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:42:20] 2025-07-28 03:42:20,530 [wrapper] pilotpid: 4074586
[2025-07-27 23:42:20] 2025-07-28 03:42:20,533 [wrapper] Pilot exit status: 0
[2025-07-27 23:42:20] 2025-07-28 03:42:20,545 [wrapper] pandaids: 6744926059
[2025-07-27 23:42:20] 2025-07-28 03:42:20,624 [wrapper] cleanup supervisor_pilot  202818 4074587
[2025-07-27 23:42:20] 2025-07-28 03:42:20,627 [wrapper] Test setup, not cleaning
[2025-07-27 23:42:20] 2025-07-28 03:42:20,630 [wrapper] apfmon messages muted
[2025-07-27 23:42:20] 2025-07-28 03:42:20,634 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:42:20] 2025-07-28 03:42:20,636 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:42:20]  *** Error codes and diagnostics ***
[2025-07-27 23:42:20]     "exeErrorCode": 0,
[2025-07-27 23:42:20]     "exeErrorDiag": "",
[2025-07-27 23:42:20]     "pilotErrorCode": 0,
[2025-07-27 23:42:20]     "pilotErrorDiag": "",
[2025-07-27 23:42:20]  *** Listing of results directory ***
[2025-07-27 23:42:20] total 437740
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 15:13 pilot3.tar.gz
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 15:33 queuedata.json
[2025-07-27 23:42:20] -rwx------. 1 boincer umatlas     36292 Jul 24 15:34 runpilot2-wrapper.sh
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:42:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:21 run_atlas
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:21 job.xml
[2025-07-27 23:42:20] -rw-r--r--. 2 boincer umatlas 231855506 Jul 27 22:21 EVNT.45743347._000406.pool.root.1
[2025-07-27 23:42:20] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:21 start_atlas.sh
[2025-07-27 23:42:20] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:21 shared
[2025-07-27 23:42:20] -rw-r--r--. 2 boincer umatlas    542878 Jul 27 22:21 input.tar.gz
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:21 boinc_lockfile
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas      2560 Jul 27 22:21 pandaJob.out
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas    980125 Jul 27 22:21 agis_schedconf.cvmfs.json
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:21 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:42:20] drwx------. 4 boincer umatlas      4096 Jul 27 22:21 pilot3
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas      6946 Jul 27 23:40 init_data.xml
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas 210932813 Jul 27 23:41 HITS.45743349._007786.pool.root.1
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas       530 Jul 27 23:41 boinc_task_state.xml
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas      1026 Jul 27 23:41 memory_monitor_summary.json
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas    315925 Jul 27 23:41 log.45743349._007786.job.log.tgz.1
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas      7763 Jul 27 23:41 heartbeat.json
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 23:42 boinc_mmap_file
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas        27 Jul 27 23:42 wrapper_checkpoint.txt
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas        95 Jul 27 23:42 pilot_heartbeat.json
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas       938 Jul 27 23:42 pilotlog.txt
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas    469991 Jul 27 23:42 log.45743349._007786.job.log.1
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas       357 Jul 27 23:42 output.list
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas       620 Jul 27 23:42 runtime_log
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas    808960 Jul 27 23:42 result.tar.gz
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas       650 Jul 27 23:42 xqzKDmwsGz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkMNLDmONT4hm.diag
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 23:42 runtime_log.err
[2025-07-27 23:42:20] -rw-r--r--. 1 boincer umatlas     21843 Jul 27 23:42 stderr.txt
[2025-07-27 23:42:20] HITS file was successfully produced:
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas 210932813 Jul 27 23:41 shared/HITS.pool.root.1
[2025-07-27 23:42:20]  *** Contents of shared directory: ***
[2025-07-27 23:42:20] total 433764
[2025-07-27 23:42:20] -rw-r--r--. 2 boincer umatlas 231855506 Jul 27 22:21 ATLAS.root_0
[2025-07-27 23:42:20] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:21 start_atlas.sh
[2025-07-27 23:42:20] -rw-r--r--. 2 boincer umatlas    542878 Jul 27 22:21 input.tar.gz
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas 210932813 Jul 27 23:41 HITS.pool.root.1
[2025-07-27 23:42:20] -rw-------. 1 boincer umatlas    808960 Jul 27 23:42 result.tar.gz
23:42:21 (4071000): run_atlas exited; CPU time 35017.848805
23:42:21 (4071000): called boinc_finish(0)

</stderr_txt>
]]>

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