Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:35:19 (1692896): wrapper (7.7.26015): starting
23:35:19 (1692896): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 23:35:19] Arguments: --nthreads 12
[2025-07-27 23:35:19] Threads: 12
[2025-07-27 23:35:19] Checking for CVMFS
[2025-07-27 23:35:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:35:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:35:19] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:35:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:35:20] 2.13.0.0 3229734 19270 339828 148834 2 399 32638348 40960000 9242 16776704 0 60687131 99.838 48045874 27708 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 23:35:20] CVMFS is ok
[2025-07-27 23:35:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:35:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:35:20] Further information can be found at the LHC@home message board.
[2025-07-27 23:35:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:35:20] Checking for apptainer binary...
[2025-07-27 23:35:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:35:20] Running /usr/bin/apptainer --version
[2025-07-27 23:35:20] apptainer version 1.4.1-1.el9
[2025-07-27 23:35:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:35:20] c6-5-7-4.aglt2.org
[2025-07-27 23:35:20] apptainer works
[2025-07-27 23:35:20] Set ATHENA_PROC_NUMBER=12
[2025-07-27 23:35:20] Set ATHENA_CORE_NUMBER=12
[2025-07-27 23:35:20] Starting ATLAS job with PandaID=6748042529
[2025-07-27 23:35:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:02:24]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:02:24]  lfn=log.45758877._000129.job.log.tgz.1
[2025-07-28 01:02:24]  mtime=0
[2025-07-28 01:02:24]  protocol_id=None
[2025-07-28 01:02:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 01:02:24]  replicas=None
[2025-07-28 01:02:24]  scope=mc23_13p6TeV
[2025-07-28 01:02:24]  status=None
[2025-07-28 01:02:24]  status_code=0
[2025-07-28 01:02:24]  storage_token=
[2025-07-28 01:02:24]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748042529/log.45758877._000129.job.log.tgz.1
[2025-07-28 01:02:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/c1/log.45758877._000129.job.log.tgz.1
[2025-07-28 01:02:24]  workdir=None
[2025-07-28 01:02:24] ]
[2025-07-28 01:02:24] 2025-07-28 05:01:41,314 | INFO     | transferring file log.45758877._000129.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748042529/log.45758877._000129.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 01:02:24] 2025-07-28 05:01:41,314 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748042529/log.45758877._000129.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758877._000129.job
[2025-07-28 01:02:24] 2025-07-28 05:01:41,334 | INFO     | adding to output.list: log.45758877._000129.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/c1/log.45758877._000129.job.log.tg
[2025-07-28 01:02:24] 2025-07-28 05:01:41,335 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 01:02:24] 2025-07-28 05:01:41,335 | INFO     | summary of transferred files:
[2025-07-28 01:02:24] 2025-07-28 05:01:41,335 | INFO     |  -- lfn=log.45758877._000129.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 01:02:24] 2025-07-28 05:01:41,336 | INFO     | stage-out finished correctly
[2025-07-28 01:02:24] 2025-07-28 05:01:43,030 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 01:02:24] 2025-07-28 05:01:43,444 | INFO     | monitor loop #378: job 0:6748042529 is in state 'finished'
[2025-07-28 01:02:24] 2025-07-28 05:01:43,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:02:24] 2025-07-28 05:01:45,391 | INFO     | job 6748042529 has state=finished
[2025-07-28 01:02:24] 2025-07-28 05:01:45,391 | INFO     | preparing for final server update for job 6748042529 in state='finished'
[2025-07-28 01:02:24] 2025-07-28 05:01:45,448 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 01:02:24] 2025-07-28 05:01:45,448 | INFO     | this job has now completed (state=finished)
[2025-07-28 01:02:24] 2025-07-28 05:01:45,448 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 01:02:24] 2025-07-28 05:01:45,448 | INFO     | log transfer has been attempted: DONE
[2025-07-28 01:02:24] 2025-07-28 05:01:45,448 | INFO     | job 6748042529 has finished - writing final server update
[2025-07-28 01:02:24] 2025-07-28 05:01:45,449 | INFO     | total number of processed events: 400 (read)
[2025-07-28 01:02:24] 2025-07-28 05:01:45,450 | INFO     | executing command: lscpu
[2025-07-28 01:02:24] 2025-07-28 05:01:45,514 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 01:02:24] 2025-07-28 05:01:45,951 | INFO     | monitor loop #379: job 0:6748042529 is in state 'finished'
[2025-07-28 01:02:24] 2025-07-28 05:01:45,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:02:24] 2025-07-28 05:01:48,454 | INFO     | monitor loop #380: job 0:6748042529 is in state 'finished'
[2025-07-28 01:02:24] 2025-07-28 05:01:48,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:02:24] 2025-07-28 05:01:50,423 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 01:02:24] 2025-07-28 05:01:50,432 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2670.450017857143
[2025-07-28 01:02:24] 2025-07-28 05:01:50,442 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748042529/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:02:24] 2025-07-28 05:01:50,443 | INFO     | extracted standard info from prmon json
[2025-07-28 01:02:24] 2025-07-28 05:01:50,443 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:02:24] 2025-07-28 05:01:50,443 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:02:24] 2025-07-28 05:01:50,444 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:02:24] 2025-07-28 05:01:50,444 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:02:24] 2025-07-28 05:01:50,447 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:02:24] 2025-07-28 05:01:50,447 | INFO     | sum of square deviations: 147126479.5
[2025-07-28 01:02:24] 2025-07-28 05:01:50,448 | INFO     | sum of deviations: -15571372308.5
[2025-07-28 01:02:24] 2025-07-28 05:01:50,448 | INFO     | mean x: 1753676410.5
[2025-07-28 01:02:24] 2025-07-28 05:01:50,448 | INFO     | mean y: 2892646.217948718
[2025-07-28 01:02:24] 2025-07-28 05:01:50,448 | INFO     | -- intersect: 185606112334.00626
[2025-07-28 01:02:24] 2025-07-28 05:01:50,448 | INFO     | intersect: 185606112334.00626
[2025-07-28 01:02:24] 2025-07-28 05:01:50,449 | INFO     | chi2: 0.14932834128221728
[2025-07-28 01:02:24] 2025-07-28 05:01:50,449 | INFO     | -- intersect: 185606112334.00626
[2025-07-28 01:02:24] 2025-07-28 05:01:50,449 | INFO     | current memory leak: -105.84 B/s (using 78 data points, chi2=0.15)
[2025-07-28 01:02:24] 2025-07-28 05:01:50,449 | INFO     | could have reported an average CPU frequency of 2713 MHz (6 samples)
[2025-07-28 01:02:24] 2025-07-28 05:01:50,449 | INFO     | ..............................
[2025-07-28 01:02:24] 2025-07-28 05:01:50,450 | INFO     | . Timing measurements:
[2025-07-28 01:02:24] 2025-07-28 05:01:50,450 | INFO     | . get job = 0 s
[2025-07-28 01:02:24] 2025-07-28 05:01:50,450 | INFO     | . initial setup = 2 s
[2025-07-28 01:02:24] 2025-07-28 05:01:50,450 | INFO     | . payload setup = 6 s
[2025-07-28 01:02:24] 2025-07-28 05:01:50,450 | INFO     | . stage-in = 0 s
[2025-07-28 01:02:24] 2025-07-28 05:01:50,450 | INFO     | . payload execution = 5143 s
[2025-07-28 01:02:24] 2025-07-28 05:01:50,450 | INFO     | . stage-out = 0 s
[2025-07-28 01:02:24] 2025-07-28 05:01:50,450 | INFO     | . log creation = 0 s
[2025-07-28 01:02:24] 2025-07-28 05:01:50,450 | INFO     | ..............................
[2025-07-28 01:02:24] 2025-07-28 05:01:50,571 | INFO     | 
[2025-07-28 01:02:24] 2025-07-28 05:01:50,571 | INFO     | job summary report
[2025-07-28 01:02:24] 2025-07-28 05:01:50,572 | INFO     | --------------------------------------------------
[2025-07-28 01:02:24] 2025-07-28 05:01:50,572 | INFO     | PanDA job id: 6748042529
[2025-07-28 01:02:24] 2025-07-28 05:01:50,572 | INFO     | task id: 45758877
[2025-07-28 01:02:24] 2025-07-28 05:01:50,572 | INFO     | errors: (none)
[2025-07-28 01:02:24] 2025-07-28 05:01:50,572 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:02:24] 2025-07-28 05:01:50,572 | INFO     | pilot state: finished 
[2025-07-28 01:02:24] 2025-07-28 05:01:50,572 | INFO     | transexitcode: 0
[2025-07-28 01:02:24] 2025-07-28 05:01:50,572 | INFO     | exeerrorcode: 0
[2025-07-28 01:02:24] 2025-07-28 05:01:50,572 | INFO     | exeerrordiag: 
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | exitcode: 0
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | exitmsg: OK
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | cpuconsumptiontime: 53802 s
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | nevents: 400
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | neventsw: 0
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | pid: 1708428
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | pgrp: 1708428
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | corecount: 12
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | event service: False
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | sizes: {0: 2397425, 4: 2397687, 11: 2397715, 5153: 2424049, 5154: 2424048, 5155: 2433102, 5157: 2433286, 5164: 2433480}
[2025-07-28 01:02:24] 2025-07-28 05:01:50,573 | INFO     | --------------------------------------------------
[2025-07-28 01:02:24] 2025-07-28 05:01:50,574 | INFO     | 
[2025-07-28 01:02:24] 2025-07-28 05:01:50,574 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 01:02:24] 2025-07-28 05:01:50,598 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,598 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,598 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,599 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,599 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,599 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,599 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,599 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,599 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,599 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:02:24] 2025-07-28 05:01:50,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:02:24] 2025-07-28 05:01:50,601 | INFO     | job 6748042529 has completed (purged errors)
[2025-07-28 01:02:24] 2025-07-28 05:01:50,601 | INFO     | overall cleanup function is called
[2025-07-28 01:02:24] 2025-07-28 05:01:51,609 | INFO     | --- collectZombieJob: --- 10, [1708428]
[2025-07-28 01:02:24] 2025-07-28 05:01:51,609 | INFO     | zombie collector waiting for pid 1708428
[2025-07-28 01:02:24] 2025-07-28 05:01:51,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:02:24] 2025-07-28 05:01:51,610 | INFO     | collected zombie processes
[2025-07-28 01:02:24] 2025-07-28 05:01:51,610 | INFO     | will attempt to kill all subprocesses of pid=1708428
[2025-07-28 01:02:24] 2025-07-28 05:01:51,894 | INFO     | process IDs to be killed: [1708428] (in reverse order)
[2025-07-28 01:02:24] 2025-07-28 05:01:52,009 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:02:24] 2025-07-28 05:01:52,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:02:24] 2025-07-28 05:01:52,020 | INFO     | did not find any defunct processes belonging to 1708428
[2025-07-28 01:02:24] 2025-07-28 05:01:52,031 | INFO     | did not find any defunct processes belonging to 1708428
[2025-07-28 01:02:24] 2025-07-28 05:01:52,032 | INFO     | ready for new job
[2025-07-28 01:02:24] 2025-07-28 05:01:52,032 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:02:24] 2025-07-28 05:01:52,033 | INFO     | ***************************************
[2025-07-28 01:02:24] 2025-07-28 05:01:52,033 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:02:24] 2025-07-28 05:01:52,033 | INFO     | ***************************************
[2025-07-28 01:02:24] 2025-07-28 05:01:52,033 | INFO     | 
[2025-07-28 01:02:24] 2025-07-28 05:01:52,037 | INFO     | architecture information:
[2025-07-28 01:02:24] 2025-07-28 05:01:52,037 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:02:24] 2025-07-28 05:01:52,055 | INFO     | cat /etc/os-release:
[2025-07-28 01:02:24] NAME="CentOS Linux"
[2025-07-28 01:02:24] VERSION="7 (Core)"
[2025-07-28 01:02:24] ID="centos"
[2025-07-28 01:02:24] ID_LIKE="rhel fedora"
[2025-07-28 01:02:24] VERSION_ID="7"
[2025-07-28 01:02:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:02:24] ANSI_COLOR="0;31"
[2025-07-28 01:02:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:02:24] HOME_URL="https://www.centos.org/"
[2025-07-28 01:02:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:02:24] 
[2025-07-28 01:02:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:02:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:02:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:02:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:02:24] 
[2025-07-28 01:02:24] 2025-07-28 05:01:52,056 | INFO     | ***************************************
[2025-07-28 01:02:24] 2025-07-28 05:01:52,558 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 01:02:24] 2025-07-28 05:01:52,577 | INFO     | sufficient remaining disk space (75380031488 B)
[2025-07-28 01:02:24] 2025-07-28 05:01:52,577 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:02:24] 2025-07-28 05:01:52,577 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:02:24] 2025-07-28 05:01:52,577 | INFO     | update_server=False
[2025-07-28 01:02:24] 2025-07-28 05:01:52,578 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:02:24] 2025-07-28 05:01:52,578 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:02:24] 2025-07-28 05:01:52,578 | INFO     | aborting loop
[2025-07-28 01:02:24] 2025-07-28 05:01:52,578 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:02:24] 2025-07-28 05:01:53,053 | INFO     | all data control threads have been joined
[2025-07-28 01:02:24] 2025-07-28 05:01:53,060 | INFO     | all payload control threads have been joined
[2025-07-28 01:02:24] 2025-07-28 05:01:53,582 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:53,583 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:53,617 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:02:24] 2025-07-28 05:01:53,649 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:53,816 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:54,058 | INFO     | [data] control thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:54,065 | INFO     | [payload] control thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:54,158 | INFO     | all job control threads have been joined
[2025-07-28 01:02:24] 2025-07-28 05:01:54,205 | INFO     | [job] validate thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:54,537 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:54,583 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:54,751 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:54,766 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:54,789 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:54,822 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:55,163 | INFO     | [job] control thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:55,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:02:24] 2025-07-28 05:01:56,587 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:57,623 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:02:24] 2025-07-28 05:01:57,793 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497348601664)>', '<ExcThread(monitor, started 140496995329792)>']
[2025-07-28 01:02:24] 2025-07-28 05:02:02,818 | INFO     | all workflow threads have been joined
[2025-07-28 01:02:24] 2025-07-28 05:02:02,818 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:02:24] 2025-07-28 05:02:02,818 | INFO     | traces error code: 0
[2025-07-28 01:02:24] 2025-07-28 05:02:02,819 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:02:24] 2025-07-28 05:02:23,853 | INFO     | PID=1697770 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:02:24] 2025-07-28 05:02:23,854 | INFO     | .. there are 14 such processes running
[2025-07-28 01:02:24] 2025-07-28 05:02:23,854 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:02:24] 2025-07-28 05:02:23,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:02:24] 2025-07-28 05:02:23,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:02:24] 2025-07-28 05:02:23,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:02:24] 2025-07-28 05:02:23,855 | INFO     | [monitor] control thread has ended
[2025-07-28 01:02:24] 2025-07-28 05:02:24,055 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:02:24] 2025-07-28 05:02:24,060 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:02:24] 2025-07-28 05:02:24,064 [wrapper] pilotpid: 1697770
[2025-07-28 01:02:24] 2025-07-28 05:02:24,068 [wrapper] Pilot exit status: 0
[2025-07-28 01:02:24] 2025-07-28 05:02:24,084 [wrapper] pandaids: 6748042529
[2025-07-28 01:02:24] 2025-07-28 05:02:24,144 [wrapper] cleanup supervisor_pilot 1902686 1697771
[2025-07-28 01:02:24] 2025-07-28 05:02:24,150 [wrapper] Test setup, not cleaning
[2025-07-28 01:02:24] 2025-07-28 05:02:24,155 [wrapper] apfmon messages muted
[2025-07-28 01:02:24] 2025-07-28 05:02:24,159 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:02:24] 2025-07-28 05:02:24,163 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:02:24]  *** Error codes and diagnostics ***
[2025-07-28 01:02:24]     "exeErrorCode": 0,
[2025-07-28 01:02:24]     "exeErrorDiag": "",
[2025-07-28 01:02:24]     "pilotErrorCode": 0,
[2025-07-28 01:02:24]     "pilotErrorDiag": "",
[2025-07-28 01:02:24]  *** Listing of results directory ***
[2025-07-28 01:02:24] total 402424
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:27 pilot3.tar.gz
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 16:34 queuedata.json
[2025-07-28 01:02:24] -rwx------. 1 boincer umatlas     36292 Jul 27 16:35 runpilot2-wrapper.sh
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:02:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:35 run_atlas
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:35 job.xml
[2025-07-28 01:02:24] -rw-r--r--. 2 boincer umatlas 238622784 Jul 27 23:35 EVNT.45758875._000003.pool.root.1
[2025-07-28 01:02:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:35 start_atlas.sh
[2025-07-28 01:02:24] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:35 shared
[2025-07-28 01:02:24] -rw-r--r--. 2 boincer umatlas    542903 Jul 27 23:35 input.tar.gz
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:35 boinc_lockfile
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas      2568 Jul 27 23:35 pandaJob.out
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas    980117 Jul 27 23:35 agis_schedconf.cvmfs.json
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:35 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:02:24] drwx------. 4 boincer umatlas      4096 Jul 27 23:35 pilot3
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas      6840 Jul 28 00:58 init_data.xml
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas 167862723 Jul 28 01:01 HITS.45758877._000129.pool.root.1
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas       529 Jul 28 01:01 boinc_task_state.xml
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas      1040 Jul 28 01:01 memory_monitor_summary.json
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas    358986 Jul 28 01:01 log.45758877._000129.job.log.tgz.1
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas      7816 Jul 28 01:01 heartbeat.json
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 01:01 boinc_mmap_file
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas        27 Jul 28 01:01 wrapper_checkpoint.txt
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas        95 Jul 28 01:02 pilot_heartbeat.json
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas       823 Jul 28 01:02 pilotlog.txt
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas    502957 Jul 28 01:02 log.45758877._000129.job.log.1
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas       357 Jul 28 01:02 output.list
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas       620 Jul 28 01:02 runtime_log
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas    880640 Jul 28 01:02 result.tar.gz
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas      8662 Jul 28 01:02 runtime_log.err
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas       654 Jul 28 01:02 3VTLDmsGN07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3PWLDmMkCV1n.diag
[2025-07-28 01:02:24] -rw-r--r--. 1 boincer umatlas     21705 Jul 28 01:02 stderr.txt
[2025-07-28 01:02:24] HITS file was successfully produced:
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas 167862723 Jul 28 01:01 shared/HITS.pool.root.1
[2025-07-28 01:02:24]  *** Contents of shared directory: ***
[2025-07-28 01:02:24] total 398376
[2025-07-28 01:02:24] -rw-r--r--. 2 boincer umatlas 238622784 Jul 27 23:35 ATLAS.root_0
[2025-07-28 01:02:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:35 start_atlas.sh
[2025-07-28 01:02:24] -rw-r--r--. 2 boincer umatlas    542903 Jul 27 23:35 input.tar.gz
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas 167862723 Jul 28 01:01 HITS.pool.root.1
[2025-07-28 01:02:24] -rw-------. 1 boincer umatlas    880640 Jul 28 01:02 result.tar.gz
01:02:25 (1692896): run_atlas exited; CPU time 53920.157677
01:02:25 (1692896): called boinc_finish(0)

</stderr_txt>
]]>

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