Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:13:23 (4022479): wrapper (7.7.26015): starting
22:13:23 (4022479): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 22:13:23] Arguments: --nthreads 8
[2025-07-27 22:13:23] Threads: 8
[2025-07-27 22:13:23] Checking for CVMFS
[2025-07-27 22:13:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:13:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:13:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:13:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:13:23] 2.13.1.0 285388 9200 95096 148831 2 188 11376244 40960000 11130 16776704 0 126804201 99.999 355886 33041 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:13:23] CVMFS is ok
[2025-07-27 22:13:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:13:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:13:23] Further information can be found at the LHC@home message board.
[2025-07-27 22:13:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:13:23] Checking for apptainer binary...
[2025-07-27 22:13:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:13:23] Running /usr/bin/apptainer --version
[2025-07-27 22:13:23] apptainer version 1.4.1-1.el9
[2025-07-27 22:13:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:13:23] c-208-36.aglt2.org
[2025-07-27 22:13:23] apptainer works
[2025-07-27 22:13:23] Set ATHENA_PROC_NUMBER=8
[2025-07-27 22:13:23] Set ATHENA_CORE_NUMBER=8
[2025-07-27 22:13:23] Starting ATLAS job with PandaID=6748029805
[2025-07-27 22:13:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:17:59]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:17:59]  is_tar=False
[2025-07-27 23:17:59]  lfn=log.45759816._000126.job.log.tgz.1
[2025-07-27 23:17:59]  mtime=0
[2025-07-27 23:17:59]  protocol_id=None
[2025-07-27 23:17:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:17:59]  replicas=None
[2025-07-27 23:17:59]  scope=mc23_13p6TeV
[2025-07-27 23:17:59]  status=None
[2025-07-27 23:17:59]  status_code=0
[2025-07-27 23:17:59]  storage_token=
[2025-07-27 23:17:59]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6748029805/log.45759816._000126.job.log.tgz.1
[2025-07-27 23:17:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/33/log.45759816._000126.job.log.tgz.1
[2025-07-27 23:17:59]  workdir=None
[2025-07-27 23:17:59] ]
[2025-07-27 23:17:59] 2025-07-28 03:17:35,612 | INFO     | transferring file log.45759816._000126.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6748029805/log.45759816._000126.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 23:17:59] 2025-07-28 03:17:35,612 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6748029805/log.45759816._000126.job.log.tgz.1 /tmp/boinchome/slots/3/log.45759816._000126.job
[2025-07-27 23:17:59] 2025-07-28 03:17:35,630 | INFO     | adding to output.list: log.45759816._000126.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/33/log.45759816._000126.job.log.tg
[2025-07-27 23:17:59] 2025-07-28 03:17:35,630 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:17:59] 2025-07-28 03:17:35,631 | INFO     | summary of transferred files:
[2025-07-27 23:17:59] 2025-07-28 03:17:35,631 | INFO     |  -- lfn=log.45759816._000126.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:17:59] 2025-07-28 03:17:35,631 | INFO     | stage-out finished correctly
[2025-07-27 23:17:59] 2025-07-28 03:17:35,686 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:17:59] 2025-07-28 03:17:35,739 | INFO     | job 6748029805 has state=finished
[2025-07-27 23:17:59] 2025-07-28 03:17:35,739 | INFO     | preparing for final server update for job 6748029805 in state='finished'
[2025-07-27 23:17:59] 2025-07-28 03:17:35,740 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:17:59] 2025-07-28 03:17:35,740 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:17:59] 2025-07-28 03:17:35,740 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:17:59] 2025-07-28 03:17:35,740 | INFO     | job 6748029805 has finished - writing final server update
[2025-07-27 23:17:59] 2025-07-28 03:17:35,740 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:17:59] 2025-07-28 03:17:35,741 | INFO     | executing command: lscpu
[2025-07-27 23:17:59] 2025-07-28 03:17:35,797 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:17:59] 2025-07-28 03:17:37,354 | INFO     | monitor loop #283: job 0:6748029805 is in state 'finished'
[2025-07-27 23:17:59] 2025-07-28 03:17:37,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:17:59] 2025-07-28 03:17:39,012 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 23:17:59] 2025-07-28 03:17:39,017 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3713.9645781249997
[2025-07-27 23:17:59] 2025-07-28 03:17:39,030 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6748029805/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:17:59] 2025-07-28 03:17:39,031 | INFO     | extracted standard info from prmon json
[2025-07-27 23:17:59] 2025-07-28 03:17:39,031 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:17:59] 2025-07-28 03:17:39,031 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:17:59] 2025-07-28 03:17:39,031 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:17:59] 2025-07-28 03:17:39,031 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:17:59] 2025-07-28 03:17:39,032 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:17:59] 2025-07-28 03:17:39,032 | INFO     | sum of square deviations: 54438230.0
[2025-07-27 23:17:59] 2025-07-28 03:17:39,032 | INFO     | sum of deviations: 303813245.0
[2025-07-27 23:17:59] 2025-07-28 03:17:39,032 | INFO     | mean x: 1753670815.5
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | mean y: 2517900.5
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | -- intersect: -9784508994.365086
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | intersect: -9784508994.365086
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | chi2: 0.00017163065773842683
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | -- intersect: -9784508994.365086
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | current memory leak: 5.58 B/s (using 56 data points, chi2=0.00)
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | could have reported an average CPU frequency of 3701 MHz (6 samples)
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | ..............................
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | . Timing measurements:
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | . get job = 0 s
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | . initial setup = 2 s
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | . payload setup = 4 s
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | . stage-in = 0 s
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | . payload execution = 3822 s
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | . stage-out = 0 s
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | . log creation = 0 s
[2025-07-27 23:17:59] 2025-07-28 03:17:39,033 | INFO     | ..............................
[2025-07-27 23:17:59] 2025-07-28 03:17:39,508 | INFO     | 
[2025-07-27 23:17:59] 2025-07-28 03:17:39,508 | INFO     | job summary report
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | --------------------------------------------------
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | PanDA job id: 6748029805
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | task id: 45759816
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | errors: (none)
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | pilot state: finished 
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | transexitcode: 0
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | exeerrorcode: 0
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | exeerrordiag: 
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | exitcode: 0
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | exitmsg: OK
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | cpuconsumptiontime: 28488 s
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | nevents: 400
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | neventsw: 0
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | pid: 4038250
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | pgrp: 4038250
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | corecount: 8
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | event service: False
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | sizes: {0: 2397364, 3: 2397626, 11: 2397654, 3830: 2423525, 3831: 2432579, 3834: 2432717}
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | --------------------------------------------------
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | 
[2025-07-27 23:17:59] 2025-07-28 03:17:39,509 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-27 23:17:59] 2025-07-28 03:17:39,527 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,527 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,527 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | job 6748029805 has completed (purged errors)
[2025-07-27 23:17:59] 2025-07-28 03:17:39,528 | INFO     | overall cleanup function is called
[2025-07-27 23:17:59] 2025-07-28 03:17:40,536 | INFO     | --- collectZombieJob: --- 10, [4038250]
[2025-07-27 23:17:59] 2025-07-28 03:17:40,536 | INFO     | zombie collector waiting for pid 4038250
[2025-07-27 23:17:59] 2025-07-28 03:17:40,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:17:59] 2025-07-28 03:17:40,536 | INFO     | collected zombie processes
[2025-07-27 23:17:59] 2025-07-28 03:17:40,536 | INFO     | will attempt to kill all subprocesses of pid=4038250
[2025-07-27 23:17:59] 2025-07-28 03:17:41,424 | INFO     | PID=4026091 has CPU usage=14.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 23:17:59] 2025-07-28 03:17:41,424 | INFO     | .. there are 16 such processes running
[2025-07-27 23:17:59] 2025-07-28 03:17:41,448 | INFO     | process IDs to be killed: [4038250] (in reverse order)
[2025-07-27 23:17:59] 2025-07-28 03:17:41,558 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:17:59] 2025-07-28 03:17:41,559 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:17:59] 2025-07-28 03:17:41,573 | INFO     | did not find any defunct processes belonging to 4038250
[2025-07-27 23:17:59] 2025-07-28 03:17:41,585 | INFO     | did not find any defunct processes belonging to 4038250
[2025-07-27 23:17:59] 2025-07-28 03:17:41,585 | INFO     | ready for new job
[2025-07-27 23:17:59] 2025-07-28 03:17:41,585 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:17:59] 2025-07-28 03:17:41,586 | INFO     | ***************************************
[2025-07-27 23:17:59] 2025-07-28 03:17:41,587 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:17:59] 2025-07-28 03:17:41,587 | INFO     | ***************************************
[2025-07-27 23:17:59] 2025-07-28 03:17:41,587 | INFO     | 
[2025-07-27 23:17:59] 2025-07-28 03:17:41,592 | INFO     | architecture information:
[2025-07-27 23:17:59] 2025-07-28 03:17:41,592 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:17:59] 2025-07-28 03:17:41,604 | INFO     | cat /etc/os-release:
[2025-07-27 23:17:59] NAME="CentOS Linux"
[2025-07-27 23:17:59] VERSION="7 (Core)"
[2025-07-27 23:17:59] ID="centos"
[2025-07-27 23:17:59] ID_LIKE="rhel fedora"
[2025-07-27 23:17:59] VERSION_ID="7"
[2025-07-27 23:17:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:17:59] ANSI_COLOR="0;31"
[2025-07-27 23:17:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:17:59] HOME_URL="https://www.centos.org/"
[2025-07-27 23:17:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:17:59] 
[2025-07-27 23:17:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:17:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:17:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:17:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:17:59] 
[2025-07-27 23:17:59] 2025-07-28 03:17:41,604 | INFO     | ***************************************
[2025-07-27 23:17:59] 2025-07-28 03:17:42,107 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-27 23:17:59] 2025-07-28 03:17:42,121 | INFO     | sufficient remaining disk space (164934713344 B)
[2025-07-27 23:17:59] 2025-07-28 03:17:42,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:17:59] 2025-07-28 03:17:42,121 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:17:59] 2025-07-28 03:17:42,121 | INFO     | update_server=False
[2025-07-27 23:17:59] 2025-07-28 03:17:42,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:17:59] 2025-07-28 03:17:42,121 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:17:59] 2025-07-28 03:17:42,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:17:59] 2025-07-28 03:17:42,122 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-27 23:17:59] 2025-07-28 03:17:42,122 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:17:59] 2025-07-28 03:17:42,122 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:17:59] 2025-07-28 03:17:42,122 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:17:59] 2025-07-28 03:17:42,360 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 23:17:59] 2025-07-28 03:17:42,360 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 23:17:59] 2025-07-28 03:17:42,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:17:59] 2025-07-28 03:17:42,360 | INFO     | will abort loop
[2025-07-27 23:17:59] 2025-07-28 03:17:42,499 | INFO     | all data control threads have been joined
[2025-07-27 23:17:59] 2025-07-28 03:17:42,748 | INFO     | all job control threads have been joined
[2025-07-27 23:17:59] 2025-07-28 03:17:43,122 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:43,365 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:43,494 | INFO     | all payload control threads have been joined
[2025-07-27 23:17:59] 2025-07-28 03:17:43,505 | INFO     | [data] control thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:43,533 | INFO     | [job] validate thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:43,633 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:43,754 | INFO     | [job] control thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:43,759 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:43,876 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:43,970 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:44,101 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:17:59] 2025-07-28 03:17:44,127 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:44,194 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:44,330 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:44,499 | INFO     | [payload] control thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:45,106 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:46,128 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:52,185 | INFO     | job.realtimelogging is not enabled
[2025-07-27 23:17:59] 2025-07-28 03:17:53,186 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:17:59] 2025-07-28 03:17:53,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140174611191616)>', '<ExcThread(monitor, started 140173908113152)>']
[2025-07-27 23:17:59] 2025-07-28 03:17:54,176 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:17:59] 2025-07-28 03:17:54,176 | INFO     | [monitor] control thread has ended
[2025-07-27 23:17:59] 2025-07-28 03:17:58,962 | INFO     | all workflow threads have been joined
[2025-07-27 23:17:59] 2025-07-28 03:17:58,962 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:17:59] 2025-07-28 03:17:58,962 | INFO     | traces error code: 0
[2025-07-27 23:17:59] 2025-07-28 03:17:58,963 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:17:59] 2025-07-28 03:17:59,040 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:17:59] 2025-07-28 03:17:59,042 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:17:59] 2025-07-28 03:17:59,044 [wrapper] pilotpid: 4026091
[2025-07-27 23:17:59] 2025-07-28 03:17:59,046 [wrapper] Pilot exit status: 0
[2025-07-27 23:17:59] 2025-07-28 03:17:59,055 [wrapper] pandaids: 6748029805
[2025-07-27 23:17:59] 2025-07-28 03:17:59,132 [wrapper] cleanup supervisor_pilot  186585 4026092
[2025-07-27 23:17:59] 2025-07-28 03:17:59,134 [wrapper] Test setup, not cleaning
[2025-07-27 23:17:59] 2025-07-28 03:17:59,137 [wrapper] apfmon messages muted
[2025-07-27 23:17:59] 2025-07-28 03:17:59,139 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:17:59] 2025-07-28 03:17:59,142 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:17:59]  *** Error codes and diagnostics ***
[2025-07-27 23:17:59]     "exeErrorCode": 0,
[2025-07-27 23:17:59]     "exeErrorDiag": "",
[2025-07-27 23:17:59]     "pilotErrorCode": 0,
[2025-07-27 23:17:59]     "pilotErrorDiag": "",
[2025-07-27 23:17:59]  *** Listing of results directory ***
[2025-07-27 23:17:59] total 411260
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:27 pilot3.tar.gz
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 16:34 queuedata.json
[2025-07-27 23:17:59] -rwx------. 1 boincer umatlas     36292 Jul 27 16:35 runpilot2-wrapper.sh
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:17:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:13 run_atlas
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:13 job.xml
[2025-07-27 23:17:59] -rw-r--r--. 2 boincer umatlas 237883845 Jul 27 22:13 EVNT.45759813._000005.pool.root.1
[2025-07-27 23:17:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:13 start_atlas.sh
[2025-07-27 23:17:59] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:13 shared
[2025-07-27 23:17:59] -rw-r--r--. 2 boincer umatlas    542881 Jul 27 22:13 input.tar.gz
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:13 boinc_lockfile
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas      2555 Jul 27 22:13 pandaJob.out
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas    980125 Jul 27 22:13 agis_schedconf.cvmfs.json
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:13 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:17:59] drwx------. 4 boincer umatlas      4096 Jul 27 22:13 pilot3
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas      7173 Jul 27 23:13 init_data.xml
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas        95 Jul 27 23:16 pilot_heartbeat.json
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas 177983835 Jul 27 23:17 HITS.45759816._000126.pool.root.1
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas       529 Jul 27 23:17 boinc_task_state.xml
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas      1029 Jul 27 23:17 memory_monitor_summary.json
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas    299167 Jul 27 23:17 log.45759816._000126.job.log.tgz.1
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas      7755 Jul 27 23:17 heartbeat.json
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas        27 Jul 27 23:17 wrapper_checkpoint.txt
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 23:17 boinc_mmap_file
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas      4739 Jul 27 23:17 pilotlog.txt
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas    389829 Jul 27 23:17 log.45759816._000126.job.log.1
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas       357 Jul 27 23:17 output.list
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas       620 Jul 27 23:17 runtime_log
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas    706560 Jul 27 23:17 result.tar.gz
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas       651 Jul 27 23:17 tFtLDmsGN07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCQWLDmEphy1m.diag
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 23:17 runtime_log.err
[2025-07-27 23:17:59] -rw-r--r--. 1 boincer umatlas     21526 Jul 27 23:17 stderr.txt
[2025-07-27 23:17:59] HITS file was successfully produced:
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas 177983835 Jul 27 23:17 shared/HITS.pool.root.1
[2025-07-27 23:17:59]  *** Contents of shared directory: ***
[2025-07-27 23:17:59] total 407372
[2025-07-27 23:17:59] -rw-r--r--. 2 boincer umatlas 237883845 Jul 27 22:13 ATLAS.root_0
[2025-07-27 23:17:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:13 start_atlas.sh
[2025-07-27 23:17:59] -rw-r--r--. 2 boincer umatlas    542881 Jul 27 22:13 input.tar.gz
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas 177983835 Jul 27 23:17 HITS.pool.root.1
[2025-07-27 23:17:59] -rw-------. 1 boincer umatlas    706560 Jul 27 23:17 result.tar.gz
23:18:01 (4022479): run_atlas exited; CPU time 28590.882699
23:18:01 (4022479): called boinc_finish(0)

</stderr_txt>
]]>

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