Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:00:52 (2933612): wrapper (7.7.26015): starting
22:00:52 (2933612): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 22:00:52] Arguments: --nthreads 8
[2025-07-27 22:00:52] Threads: 8
[2025-07-27 22:00:52] Checking for CVMFS
[2025-07-27 22:00:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:00:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:00:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:00:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:00:52] 2.13.1.0 5036 14796 260012 148830 1 196 35868860 40960000 10243 16776704 0 80034047 99.780 68359719 33635 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 22:00:52] CVMFS is ok
[2025-07-27 22:00:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:00:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:00:52] Further information can be found at the LHC@home message board.
[2025-07-27 22:00:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:00:52] Checking for apptainer binary...
[2025-07-27 22:00:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:00:52] Running /usr/bin/apptainer --version
[2025-07-27 22:00:52] apptainer version 1.4.1-1.el9
[2025-07-27 22:00:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:00:53] c-212-2.aglt2.org
[2025-07-27 22:00:53] apptainer works
[2025-07-27 22:00:53] Set ATHENA_PROC_NUMBER=8
[2025-07-27 22:00:53] Set ATHENA_CORE_NUMBER=8
[2025-07-27 22:00:53] Starting ATLAS job with PandaID=6748081156
[2025-07-27 22:00:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:25:27]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:25:27]  lfn=log.45743349._055577.job.log.tgz.1
[2025-07-27 23:25:27]  mtime=0
[2025-07-27 23:25:27]  protocol_id=None
[2025-07-27 23:25:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:25:27]  replicas=None
[2025-07-27 23:25:27]  scope=mc23_13p6TeV
[2025-07-27 23:25:27]  status=None
[2025-07-27 23:25:27]  status_code=0
[2025-07-27 23:25:27]  storage_token=
[2025-07-27 23:25:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748081156/log.45743349._055577.job.log.tgz.1
[2025-07-27 23:25:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/0a/log.45743349._055577.job.log.tgz.1
[2025-07-27 23:25:27]  workdir=None
[2025-07-27 23:25:27] ]
[2025-07-27 23:25:27] 2025-07-28 03:24:49,920 | INFO     | transferring file log.45743349._055577.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748081156/log.45743349._055577.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 23:25:27] 2025-07-28 03:24:49,921 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748081156/log.45743349._055577.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._055577.job
[2025-07-27 23:25:27] 2025-07-28 03:24:49,947 | INFO     | adding to output.list: log.45743349._055577.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/0a/log.45743349._055577.job.log.tg
[2025-07-27 23:25:27] 2025-07-28 03:24:49,948 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:25:27] 2025-07-28 03:24:49,948 | INFO     | summary of transferred files:
[2025-07-27 23:25:27] 2025-07-28 03:24:49,948 | INFO     |  -- lfn=log.45743349._055577.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:25:27] 2025-07-28 03:24:49,949 | INFO     | stage-out finished correctly
[2025-07-27 23:25:27] 2025-07-28 03:24:50,036 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:25:27] 2025-07-28 03:24:50,121 | INFO     | job 6748081156 has state=finished
[2025-07-27 23:25:27] 2025-07-28 03:24:50,122 | INFO     | preparing for final server update for job 6748081156 in state='finished'
[2025-07-27 23:25:27] 2025-07-28 03:24:50,123 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:25:27] 2025-07-28 03:24:50,123 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:25:27] 2025-07-28 03:24:50,123 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:25:27] 2025-07-28 03:24:50,123 | INFO     | job 6748081156 has finished - writing final server update
[2025-07-27 23:25:27] 2025-07-28 03:24:50,123 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:25:27] 2025-07-28 03:24:50,127 | INFO     | executing command: lscpu
[2025-07-27 23:25:27] 2025-07-28 03:24:50,196 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:25:27] 2025-07-28 03:24:50,506 | WARNING  | process 2943878 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 23:25:27] 2025-07-28 03:24:50,506 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748081156/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:25:27] 2025-07-28 03:24:50,884 | INFO     | number of running child processes to parent process 2943878: 1
[2025-07-27 23:25:27] 2025-07-28 03:24:50,884 | INFO     | maximum number of monitored processes: 6
[2025-07-27 23:25:27] 2025-07-28 03:24:53,388 | INFO     | monitor loop #369: job 0:6748081156 is in state 'finished'
[2025-07-27 23:25:27] 2025-07-28 03:24:53,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:25:27] 2025-07-28 03:24:54,517 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 23:25:27] 2025-07-28 03:24:54,522 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3242.019104166667
[2025-07-27 23:25:27] 2025-07-28 03:24:54,536 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748081156/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:25:27] 2025-07-28 03:24:54,537 | INFO     | extracted standard info from prmon json
[2025-07-27 23:25:27] 2025-07-28 03:24:54,537 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:25:27] 2025-07-28 03:24:54,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:25:27] 2025-07-28 03:24:54,537 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:25:27] 2025-07-28 03:24:54,537 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:25:27] 2025-07-28 03:24:54,539 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:25:27] 2025-07-28 03:24:54,539 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 23:25:27] 2025-07-28 03:24:54,539 | INFO     | sum of deviations: 1051657873.0
[2025-07-27 23:25:27] 2025-07-28 03:24:54,539 | INFO     | mean x: 1753670656.0
[2025-07-27 23:25:27] 2025-07-28 03:24:54,539 | INFO     | mean y: 2507093.466666667
[2025-07-27 23:25:27] 2025-07-28 03:24:54,539 | INFO     | -- intersect: -14098090315.736145
[2025-07-27 23:25:27] 2025-07-28 03:24:54,540 | INFO     | intersect: -14098090315.736145
[2025-07-27 23:25:27] 2025-07-28 03:24:54,540 | INFO     | chi2: 0.0013107673177101074
[2025-07-27 23:25:27] 2025-07-28 03:24:54,540 | INFO     | -- intersect: -14098090315.736145
[2025-07-27 23:25:27] 2025-07-28 03:24:54,540 | INFO     | current memory leak: 8.04 B/s (using 75 data points, chi2=0.00)
[2025-07-27 23:25:27] 2025-07-28 03:24:54,540 | INFO     | could have reported an average CPU frequency of 3276 MHz (6 samples)
[2025-07-27 23:25:27] 2025-07-28 03:24:54,540 | INFO     | ..............................
[2025-07-27 23:25:27] 2025-07-28 03:24:54,541 | INFO     | . Timing measurements:
[2025-07-27 23:25:27] 2025-07-28 03:24:54,541 | INFO     | . get job = 0 s
[2025-07-27 23:25:27] 2025-07-28 03:24:54,541 | INFO     | . initial setup = 2 s
[2025-07-27 23:25:27] 2025-07-28 03:24:54,541 | INFO     | . payload setup = 7 s
[2025-07-27 23:25:27] 2025-07-28 03:24:54,541 | INFO     | . stage-in = 0 s
[2025-07-27 23:25:27] 2025-07-28 03:24:54,541 | INFO     | . payload execution = 4995 s
[2025-07-27 23:25:27] 2025-07-28 03:24:54,541 | INFO     | . stage-out = 0 s
[2025-07-27 23:25:27] 2025-07-28 03:24:54,541 | INFO     | . log creation = 0 s
[2025-07-27 23:25:27] 2025-07-28 03:24:54,541 | INFO     | ..............................
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | 
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | job summary report
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | --------------------------------------------------
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | PanDA job id: 6748081156
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | task id: 45743349
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | errors: (none)
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | pilot state: finished 
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | transexitcode: 0
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | exeerrorcode: 0
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | exeerrordiag: 
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | exitcode: 0
[2025-07-27 23:25:27] 2025-07-28 03:24:54,617 | INFO     | exitmsg: OK
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | cpuconsumptiontime: 34662 s
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | nevents: 400
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | neventsw: 0
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | pid: 2943878
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | pgrp: 2943878
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | corecount: 8
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | event service: False
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | sizes: {0: 2397423, 5: 2397685, 11: 2397741, 5007: 2424102, 5009: 2433156, 5014: 2433294}
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | --------------------------------------------------
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | 
[2025-07-27 23:25:27] 2025-07-28 03:24:54,618 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 23:25:27] 2025-07-28 03:24:54,645 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,645 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,645 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,645 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,645 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,645 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,645 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,645 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,646 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:25:27] 2025-07-28 03:24:54,647 | INFO     | job 6748081156 has completed (purged errors)
[2025-07-27 23:25:27] 2025-07-28 03:24:54,647 | INFO     | overall cleanup function is called
[2025-07-27 23:25:27] 2025-07-28 03:24:55,655 | INFO     | --- collectZombieJob: --- 10, [2943878]
[2025-07-27 23:25:27] 2025-07-28 03:24:55,655 | INFO     | zombie collector waiting for pid 2943878
[2025-07-27 23:25:27] 2025-07-28 03:24:55,656 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:25:27] 2025-07-28 03:24:55,656 | INFO     | collected zombie processes
[2025-07-27 23:25:27] 2025-07-28 03:24:55,656 | INFO     | will attempt to kill all subprocesses of pid=2943878
[2025-07-27 23:25:27] 2025-07-28 03:24:56,015 | INFO     | process IDs to be killed: [2943878] (in reverse order)
[2025-07-27 23:25:27] 2025-07-28 03:24:56,132 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:25:27] 2025-07-28 03:24:56,133 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:25:27] 2025-07-28 03:24:56,150 | INFO     | did not find any defunct processes belonging to 2943878
[2025-07-27 23:25:27] 2025-07-28 03:24:56,165 | INFO     | did not find any defunct processes belonging to 2943878
[2025-07-27 23:25:27] 2025-07-28 03:24:56,166 | INFO     | ready for new job
[2025-07-27 23:25:27] 2025-07-28 03:24:56,166 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:25:27] 2025-07-28 03:24:56,168 | INFO     | ***************************************
[2025-07-27 23:25:27] 2025-07-28 03:24:56,168 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:25:27] 2025-07-28 03:24:56,168 | INFO     | ***************************************
[2025-07-27 23:25:27] 2025-07-28 03:24:56,168 | INFO     | 
[2025-07-27 23:25:27] 2025-07-28 03:24:56,173 | INFO     | architecture information:
[2025-07-27 23:25:27] 2025-07-28 03:24:56,173 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:25:27] 2025-07-28 03:24:56,190 | INFO     | cat /etc/os-release:
[2025-07-27 23:25:27] NAME="CentOS Linux"
[2025-07-27 23:25:27] VERSION="7 (Core)"
[2025-07-27 23:25:27] ID="centos"
[2025-07-27 23:25:27] ID_LIKE="rhel fedora"
[2025-07-27 23:25:27] VERSION_ID="7"
[2025-07-27 23:25:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:25:27] ANSI_COLOR="0;31"
[2025-07-27 23:25:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:25:27] HOME_URL="https://www.centos.org/"
[2025-07-27 23:25:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:25:27] 
[2025-07-27 23:25:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:25:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:25:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:25:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:25:27] 
[2025-07-27 23:25:27] 2025-07-28 03:24:56,190 | INFO     | ***************************************
[2025-07-27 23:25:27] 2025-07-28 03:24:56,692 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 23:25:27] 2025-07-28 03:24:56,713 | INFO     | sufficient remaining disk space (123977334784 B)
[2025-07-27 23:25:27] 2025-07-28 03:24:56,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:25:27] 2025-07-28 03:24:56,714 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:25:27] 2025-07-28 03:24:56,714 | INFO     | update_server=False
[2025-07-27 23:25:27] 2025-07-28 03:24:56,714 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:25:27] 2025-07-28 03:24:56,714 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:25:27] 2025-07-28 03:24:56,841 | INFO     | all data control threads have been joined
[2025-07-27 23:25:27] 2025-07-28 03:24:56,898 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:25:27] 2025-07-28 03:24:56,898 | INFO     | aborting loop
[2025-07-27 23:25:27] 2025-07-28 03:24:56,952 | INFO     | all payload control threads have been joined
[2025-07-27 23:25:27] 2025-07-28 03:24:57,720 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:57,840 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:57,847 | INFO     | [data] control thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:57,904 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:57,958 | INFO     | [payload] control thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:57,979 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:57,985 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:58,049 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:25:27] 2025-07-28 03:24:58,267 | INFO     | all job control threads have been joined
[2025-07-27 23:25:27] 2025-07-28 03:24:58,318 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:58,411 | INFO     | [job] validate thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:58,584 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:58,663 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:59,272 | INFO     | [job] control thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:24:59,630 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:25:27] 2025-07-28 03:25:00,057 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:25:00,636 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:25:00,718 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:25:07,213 | INFO     | job.realtimelogging is not enabled
[2025-07-27 23:25:27] 2025-07-28 03:25:08,218 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:25:27] 2025-07-28 03:25:09,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140476436834112)>', '<ExcThread(monitor, started 140475939931904)>']
[2025-07-27 23:25:27] 2025-07-28 03:25:14,473 | INFO     | all workflow threads have been joined
[2025-07-27 23:25:27] 2025-07-28 03:25:14,473 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:25:27] 2025-07-28 03:25:14,474 | INFO     | traces error code: 0
[2025-07-27 23:25:27] 2025-07-28 03:25:14,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:25:27] 2025-07-28 03:25:27,458 | INFO     | PID=2937219 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 23:25:27] 2025-07-28 03:25:27,459 | INFO     | .. there are 13 such processes running
[2025-07-27 23:25:27] 2025-07-28 03:25:27,460 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:25:27] 2025-07-28 03:25:27,460 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:25:27] 2025-07-28 03:25:27,460 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:25:27] 2025-07-28 03:25:27,460 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:25:27] 2025-07-28 03:25:27,460 | INFO     | [monitor] control thread has ended
[2025-07-27 23:25:27] 2025-07-28 03:25:27,587 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:25:27] 2025-07-28 03:25:27,591 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:25:27] 2025-07-28 03:25:27,594 [wrapper] pilotpid: 2937219
[2025-07-27 23:25:27] 2025-07-28 03:25:27,598 [wrapper] Pilot exit status: 0
[2025-07-27 23:25:27] 2025-07-28 03:25:27,615 [wrapper] pandaids: 6748081156
[2025-07-27 23:25:27] 2025-07-28 03:25:27,698 [wrapper] cleanup supervisor_pilot 3223657 2937220
[2025-07-27 23:25:27] 2025-07-28 03:25:27,702 [wrapper] Test setup, not cleaning
[2025-07-27 23:25:27] 2025-07-28 03:25:27,706 [wrapper] apfmon messages muted
[2025-07-27 23:25:27] 2025-07-28 03:25:27,709 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:25:27] 2025-07-28 03:25:27,712 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:25:27]  *** Error codes and diagnostics ***
[2025-07-27 23:25:27]     "exeErrorCode": 0,
[2025-07-27 23:25:27]     "exeErrorDiag": "",
[2025-07-27 23:25:27]     "pilotErrorCode": 0,
[2025-07-27 23:25:27]     "pilotErrorDiag": "",
[2025-07-27 23:25:27]  *** Listing of results directory ***
[2025-07-27 23:25:27] total 350272
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 16:42 queuedata.json
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:42 pilot3.tar.gz
[2025-07-27 23:25:27] -rwx------. 1 boincer umatlas     36292 Jul 27 16:43 runpilot2-wrapper.sh
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:25:27] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:00 run_atlas
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:00 job.xml
[2025-07-27 23:25:27] -rw-r--r--. 2 boincer umatlas 148365099 Jul 27 22:00 EVNT.45743347._002528.pool.root.1
[2025-07-27 23:25:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:00 start_atlas.sh
[2025-07-27 23:25:27] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:00 shared
[2025-07-27 23:25:27] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 22:00 input.tar.gz
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:00 boinc_lockfile
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 22:00 pandaJob.out
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas    980125 Jul 27 22:01 agis_schedconf.cvmfs.json
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:01 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:25:27] drwx------. 4 boincer umatlas      4096 Jul 27 22:01 pilot3
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas      6947 Jul 27 23:19 init_data.xml
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas 204857407 Jul 27 23:24 HITS.45743349._055577.pool.root.1
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas       529 Jul 27 23:24 boinc_task_state.xml
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas      1027 Jul 27 23:24 memory_monitor_summary.json
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas    297725 Jul 27 23:24 log.45743349._055577.job.log.tgz.1
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas      7758 Jul 27 23:24 heartbeat.json
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 23:25 boinc_mmap_file
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas        27 Jul 27 23:25 wrapper_checkpoint.txt
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas        95 Jul 27 23:25 pilot_heartbeat.json
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas       823 Jul 27 23:25 pilotlog.txt
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas    489501 Jul 27 23:25 log.45743349._055577.job.log.1
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas       357 Jul 27 23:25 output.list
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas       620 Jul 27 23:25 runtime_log
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas    808960 Jul 27 23:25 result.tar.gz
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 23:25 runtime_log.err
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas       651 Jul 27 23:25 ecmMDmqON07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjQWLDmENRnEo.diag
[2025-07-27 23:25:27] -rw-r--r--. 1 boincer umatlas     21646 Jul 27 23:25 stderr.txt
[2025-07-27 23:25:27] HITS file was successfully produced:
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas 204857407 Jul 27 23:24 shared/HITS.pool.root.1
[2025-07-27 23:25:27]  *** Contents of shared directory: ***
[2025-07-27 23:25:27] total 346296
[2025-07-27 23:25:27] -rw-r--r--. 2 boincer umatlas 148365099 Jul 27 22:00 ATLAS.root_0
[2025-07-27 23:25:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:00 start_atlas.sh
[2025-07-27 23:25:27] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 22:00 input.tar.gz
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas 204857407 Jul 27 23:24 HITS.pool.root.1
[2025-07-27 23:25:27] -rw-------. 1 boincer umatlas    808960 Jul 27 23:25 result.tar.gz
23:25:29 (2933612): run_atlas exited; CPU time 34800.356056
23:25:29 (2933612): called boinc_finish(0)

</stderr_txt>
]]>

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