Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
05:36:59 (2034653): wrapper (7.7.26015): starting
05:36:59 (2034653): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 05:36:59] Arguments: --nthreads 12
[2025-07-28 05:36:59] Threads: 12
[2025-07-28 05:36:59] Checking for CVMFS
[2025-07-28 05:36:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 05:36:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 05:36:59] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 05:36:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 05:36:59] 2.13.1.0 5295 4104 57520 148845 3 188 5393507 6144000 3616 130560 0 17371439 99.937 915247 973 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-28 05:36:59] CVMFS is ok
[2025-07-28 05:36:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 05:36:59] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-28 05:36:59] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-28 05:36:59] Further information can be found at the LHC@home message board.
[2025-07-28 05:36:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 05:36:59] Checking for apptainer binary...
[2025-07-28 05:36:59] apptainer is not installed, using version from CVMFS
[2025-07-28 05:36:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 05:37:00] XeonFire
[2025-07-28 05:37:00] apptainer works
[2025-07-28 05:37:00] Set ATHENA_PROC_NUMBER=12
[2025-07-28 05:37:00] Set ATHENA_CORE_NUMBER=12
[2025-07-28 05:37:00] Starting ATLAS job with PandaID=6747918316
[2025-07-28 05:37:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 07:03:07]  *** The last 200 lines of the pilot log: ***
[2025-07-28 07:03:07]  protocol_id=None
[2025-07-28 07:03:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 07:03:07]  replicas=None
[2025-07-28 07:03:07]  scope=mc23_13p6TeV
[2025-07-28 07:03:07]  status=None
[2025-07-28 07:03:07]  status_code=0
[2025-07-28 07:03:07]  storage_token=
[2025-07-28 07:03:07]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6747918316/log.45743349._055412.job.log.tgz.1
[2025-07-28 07:03:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/2f/log.45743349._055412.job.log.tgz.1
[2025-07-28 07:03:07]  workdir=None
[2025-07-28 07:03:07] ]
[2025-07-28 07:03:07] 2025-07-28 12:02:29,714 | INFO     | transferring file log.45743349._055412.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6747918316/log.45743349._055412.job.log.tgz.1 to /var/lib/boinc
[2025-07-28 07:03:07] 2025-07-28 12:02:29,714 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6747918316/log.45743349._055412.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.457433
[2025-07-28 07:03:07] 2025-07-28 12:02:29,731 | INFO     | adding to output.list: log.45743349._055412.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/2f/log.45743349._055412.job.log.tg
[2025-07-28 07:03:07] 2025-07-28 12:02:29,732 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 07:03:07] 2025-07-28 12:02:29,732 | INFO     | summary of transferred files:
[2025-07-28 07:03:07] 2025-07-28 12:02:29,732 | INFO     |  -- lfn=log.45743349._055412.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 07:03:07] 2025-07-28 12:02:29,732 | INFO     | stage-out finished correctly
[2025-07-28 07:03:07] 2025-07-28 12:02:30,339 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 07:03:07] 2025-07-28 12:02:30,437 | INFO     | job 6747918316 has state=finished
[2025-07-28 07:03:07] 2025-07-28 12:02:30,437 | INFO     | preparing for final server update for job 6747918316 in state='finished'
[2025-07-28 07:03:07] 2025-07-28 12:02:30,438 | INFO     | this job has now completed (state=finished)
[2025-07-28 07:03:07] 2025-07-28 12:02:30,438 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 07:03:07] 2025-07-28 12:02:30,438 | INFO     | log transfer has been attempted: DONE
[2025-07-28 07:03:07] 2025-07-28 12:02:30,438 | INFO     | job 6747918316 has finished - writing final server update
[2025-07-28 07:03:07] 2025-07-28 12:02:30,438 | INFO     | total number of processed events: 400 (read)
[2025-07-28 07:03:07] 2025-07-28 12:02:30,439 | INFO     | executing command: lscpu
[2025-07-28 07:03:07] 2025-07-28 12:02:30,492 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 07:03:07] 2025-07-28 12:02:32,887 | INFO     | PID=2038542 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 07:03:07] 2025-07-28 12:02:32,887 | INFO     | .. there are 5 such processes running
[2025-07-28 07:03:07] 2025-07-28 12:02:34,013 | WARNING  | process 2045489 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 07:03:07] 2025-07-28 12:02:34,013 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6747918316/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 07:03:07] 2025-07-28 12:02:34,244 | INFO     | number of running child processes to parent process 2045489: 1
[2025-07-28 07:03:07] 2025-07-28 12:02:34,244 | INFO     | maximum number of monitored processes: 6
[2025-07-28 07:03:07] 2025-07-28 12:02:34,246 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 07:03:07] 2025-07-28 12:02:34,257 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2318.4310468750004
[2025-07-28 07:03:07] 2025-07-28 12:02:34,270 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6747918316/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 07:03:07] 2025-07-28 12:02:34,270 | INFO     | extracted standard info from prmon json
[2025-07-28 07:03:07] 2025-07-28 12:02:34,271 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 07:03:07] 2025-07-28 12:02:34,271 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 07:03:07] 2025-07-28 12:02:34,271 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 07:03:07] 2025-07-28 12:02:34,271 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 07:03:07] 2025-07-28 12:02:34,273 | INFO     | fitting pss+swap vs Time
[2025-07-28 07:03:07] 2025-07-28 12:02:34,273 | INFO     | sum of square deviations: 141539398.0
[2025-07-28 07:03:07] 2025-07-28 12:02:34,274 | INFO     | sum of deviations: -1646231217.0000005
[2025-07-28 07:03:07] 2025-07-28 12:02:34,274 | INFO     | mean x: 1753701682.0
[2025-07-28 07:03:07] 2025-07-28 12:02:34,274 | INFO     | mean y: 2732486.2077922076
[2025-07-28 07:03:07] 2025-07-28 12:02:34,274 | INFO     | -- intersect: 20399869219.9235
[2025-07-28 07:03:07] 2025-07-28 12:02:34,274 | INFO     | intersect: 20399869219.9235
[2025-07-28 07:03:07] 2025-07-28 12:02:34,275 | INFO     | chi2: 0.00936915838819473
[2025-07-28 07:03:07] 2025-07-28 12:02:34,275 | INFO     | -- intersect: 20399869219.9235
[2025-07-28 07:03:07] 2025-07-28 12:02:34,275 | INFO     | current memory leak: -11.63 B/s (using 77 data points, chi2=0.01)
[2025-07-28 07:03:07] 2025-07-28 12:02:34,275 | INFO     | could have reported an average CPU frequency of 2310 MHz (6 samples)
[2025-07-28 07:03:07] 2025-07-28 12:02:34,275 | INFO     | ..............................
[2025-07-28 07:03:07] 2025-07-28 12:02:34,276 | INFO     | . Timing measurements:
[2025-07-28 07:03:07] 2025-07-28 12:02:34,276 | INFO     | . get job = 0 s
[2025-07-28 07:03:07] 2025-07-28 12:02:34,276 | INFO     | . initial setup = 2 s
[2025-07-28 07:03:07] 2025-07-28 12:02:34,276 | INFO     | . payload setup = 7 s
[2025-07-28 07:03:07] 2025-07-28 12:02:34,276 | INFO     | . stage-in = 0 s
[2025-07-28 07:03:07] 2025-07-28 12:02:34,276 | INFO     | . payload execution = 5091 s
[2025-07-28 07:03:07] 2025-07-28 12:02:34,276 | INFO     | . stage-out = 0 s
[2025-07-28 07:03:07] 2025-07-28 12:02:34,276 | INFO     | . log creation = 0 s
[2025-07-28 07:03:07] 2025-07-28 12:02:34,276 | INFO     | ..............................
[2025-07-28 07:03:07] 2025-07-28 12:02:34,472 | INFO     | 
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | job summary report
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | --------------------------------------------------
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | PanDA job id: 6747918316
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | task id: 45743349
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | errors: (none)
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | pilot state: finished 
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | transexitcode: 0
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | exeerrorcode: 0
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | exeerrordiag: 
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | exitcode: 0
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | exitmsg: OK
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | cpuconsumptiontime: 56430 s
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | nevents: 400
[2025-07-28 07:03:07] 2025-07-28 12:02:34,473 | INFO     | neventsw: 0
[2025-07-28 07:03:07] 2025-07-28 12:02:34,474 | INFO     | pid: 2045489
[2025-07-28 07:03:07] 2025-07-28 12:02:34,474 | INFO     | pgrp: 2045489
[2025-07-28 07:03:07] 2025-07-28 12:02:34,474 | INFO     | corecount: 12
[2025-07-28 07:03:07] 2025-07-28 12:02:34,474 | INFO     | event service: False
[2025-07-28 07:03:07] 2025-07-28 12:02:34,474 | INFO     | sizes: {0: 2397258, 1: 2397457, 5: 2397719, 12: 2397775, 5102: 2424147, 5103: 2433343, 5107: 2433481}
[2025-07-28 07:03:07] 2025-07-28 12:02:34,474 | INFO     | --------------------------------------------------
[2025-07-28 07:03:07] 2025-07-28 12:02:34,474 | INFO     | 
[2025-07-28 07:03:07] 2025-07-28 12:02:34,474 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-07-28 07:03:07] 2025-07-28 12:02:34,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,493 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,493 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,493 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,493 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,493 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,493 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,493 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,493 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | job 6747918316 has completed (purged errors)
[2025-07-28 07:03:07] 2025-07-28 12:02:34,494 | INFO     | overall cleanup function is called
[2025-07-28 07:03:07] 2025-07-28 12:02:35,502 | INFO     | --- collectZombieJob: --- 10, [2045489]
[2025-07-28 07:03:07] 2025-07-28 12:02:35,502 | INFO     | zombie collector waiting for pid 2045489
[2025-07-28 07:03:07] 2025-07-28 12:02:35,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 07:03:07] 2025-07-28 12:02:35,503 | INFO     | collected zombie processes
[2025-07-28 07:03:07] 2025-07-28 12:02:35,503 | INFO     | will attempt to kill all subprocesses of pid=2045489
[2025-07-28 07:03:07] 2025-07-28 12:02:35,739 | INFO     | process IDs to be killed: [2045489] (in reverse order)
[2025-07-28 07:03:07] 2025-07-28 12:02:35,840 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 07:03:07] 2025-07-28 12:02:35,840 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 07:03:07] 2025-07-28 12:02:35,846 | INFO     | did not find any defunct processes belonging to 2045489
[2025-07-28 07:03:07] 2025-07-28 12:02:35,850 | INFO     | did not find any defunct processes belonging to 2045489
[2025-07-28 07:03:07] 2025-07-28 12:02:35,850 | INFO     | ready for new job
[2025-07-28 07:03:07] 2025-07-28 12:02:35,850 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 07:03:07] 2025-07-28 12:02:35,851 | INFO     | ***************************************
[2025-07-28 07:03:07] 2025-07-28 12:02:35,851 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 07:03:07] 2025-07-28 12:02:35,851 | INFO     | ***************************************
[2025-07-28 07:03:07] 2025-07-28 12:02:35,852 | INFO     | 
[2025-07-28 07:03:07] 2025-07-28 12:02:35,854 | INFO     | architecture information:
[2025-07-28 07:03:07] 2025-07-28 12:02:35,854 | INFO     | executing command: cat /etc/os-release
[2025-07-28 07:03:07] 2025-07-28 12:02:35,865 | INFO     | cat /etc/os-release:
[2025-07-28 07:03:07] NAME="CentOS Linux"
[2025-07-28 07:03:07] VERSION="7 (Core)"
[2025-07-28 07:03:07] ID="centos"
[2025-07-28 07:03:07] ID_LIKE="rhel fedora"
[2025-07-28 07:03:07] VERSION_ID="7"
[2025-07-28 07:03:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 07:03:07] ANSI_COLOR="0;31"
[2025-07-28 07:03:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 07:03:07] HOME_URL="https://www.centos.org/"
[2025-07-28 07:03:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 07:03:07] 
[2025-07-28 07:03:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 07:03:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 07:03:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 07:03:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 07:03:07] 
[2025-07-28 07:03:07] 2025-07-28 12:02:35,865 | INFO     | ***************************************
[2025-07-28 07:03:07] 2025-07-28 12:02:36,368 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-07-28 07:03:07] 2025-07-28 12:02:36,383 | INFO     | sufficient remaining disk space (1823242977280 B)
[2025-07-28 07:03:07] 2025-07-28 12:02:36,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 07:03:07] 2025-07-28 12:02:36,383 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 07:03:07] 2025-07-28 12:02:36,383 | INFO     | update_server=False
[2025-07-28 07:03:07] 2025-07-28 12:02:36,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 07:03:07] 2025-07-28 12:02:36,443 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 07:03:07] 2025-07-28 12:02:36,499 | INFO     | all data control threads have been joined
[2025-07-28 07:03:07] 2025-07-28 12:02:36,747 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 07:03:07] 2025-07-28 12:02:36,747 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 07:03:07] 2025-07-28 12:02:36,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:03:07] 2025-07-28 12:02:36,748 | INFO     | will abort loop
[2025-07-28 07:03:07] 2025-07-28 12:02:37,367 | INFO     | all payload control threads have been joined
[2025-07-28 07:03:07] 2025-07-28 12:02:37,389 | INFO     | [job] retrieve thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:37,478 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:37,505 | INFO     | [data] control thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:37,573 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:37,617 | INFO     | all job control threads have been joined
[2025-07-28 07:03:07] 2025-07-28 12:02:37,753 | INFO     | [job] job monitor thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:37,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 07:03:07] 2025-07-28 12:02:38,086 | INFO     | [payload] validate_post thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:38,337 | INFO     | [job] validate thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:38,372 | INFO     | [payload] control thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:38,623 | INFO     | [job] control thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:38,631 | INFO     | [payload] failed_post thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:38,640 | INFO     | [data] copytool_in thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:38,643 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:39,377 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:03:07] 2025-07-28 12:02:39,818 | INFO     | [data] copytool_out thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:40,382 | INFO     | [job] queue monitor thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:40,449 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:47,043 | INFO     | job.realtimelogging is not enabled
[2025-07-28 07:03:07] 2025-07-28 12:02:48,049 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 07:03:07] 2025-07-28 12:02:48,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125455649232704)>', '<ExcThread(monitor, started 125454946117376)>']
[2025-07-28 07:03:07] 2025-07-28 12:02:53,992 | INFO     | all workflow threads have been joined
[2025-07-28 07:03:07] 2025-07-28 12:02:53,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 07:03:07] 2025-07-28 12:02:53,993 | INFO     | traces error code: 0
[2025-07-28 07:03:07] 2025-07-28 12:02:53,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 07:03:07] 2025-07-28 12:03:07,260 | INFO     | PID=2038542 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 07:03:07] 2025-07-28 12:03:07,261 | INFO     | .. there are 5 such processes running
[2025-07-28 07:03:07] 2025-07-28 12:03:07,261 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 07:03:07] 2025-07-28 12:03:07,261 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 07:03:07] 2025-07-28 12:03:07,262 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 07:03:07] 2025-07-28 12:03:07,262 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 07:03:07] 2025-07-28 12:03:07,262 | INFO     | [monitor] control thread has ended
[2025-07-28 07:03:07] 2025-07-28 12:03:07,345 [wrapper] ==== pilot stdout END ====
[2025-07-28 07:03:07] 2025-07-28 12:03:07,348 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 07:03:07] 2025-07-28 12:03:07,351 [wrapper] pilotpid: 2038542
[2025-07-28 07:03:07] 2025-07-28 12:03:07,354 [wrapper] Pilot exit status: 0
[2025-07-28 07:03:07] 2025-07-28 12:03:07,364 [wrapper] pandaids: 6747918316
[2025-07-28 07:03:07] 2025-07-28 12:03:07,407 [wrapper] cleanup supervisor_pilot 2122644 2038543
[2025-07-28 07:03:07] 2025-07-28 12:03:07,411 [wrapper] Test setup, not cleaning
[2025-07-28 07:03:07] 2025-07-28 12:03:07,415 [wrapper] apfmon messages muted
[2025-07-28 07:03:07] 2025-07-28 12:03:07,418 [wrapper] ==== wrapper stdout END ====
[2025-07-28 07:03:07] 2025-07-28 12:03:07,421 [wrapper] ==== wrapper stderr END ====
[2025-07-28 07:03:07]  *** Error codes and diagnostics ***
[2025-07-28 07:03:07]     "exeErrorCode": 0,
[2025-07-28 07:03:07]     "exeErrorDiag": "",
[2025-07-28 07:03:07]     "pilotErrorCode": 0,
[2025-07-28 07:03:07]     "pilotErrorDiag": "",
[2025-07-28 07:03:07]  *** Listing of results directory ***
[2025-07-28 07:03:07] total 437152
[2025-07-28 07:03:07] -rw-r--r-- 1 mark mark    530466 Jul 27 15:27 pilot3.tar.gz
[2025-07-28 07:03:07] -rw-r--r-- 1 mark mark      5112 Jul 27 15:30 queuedata.json
[2025-07-28 07:03:07] -rwx------ 1 mark mark     36292 Jul 27 15:30 runpilot2-wrapper.sh
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark       100 Jul 28 05:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 07:03:07] -rwxr-xr-x 1 mark mark      7986 Jul 28 05:36 run_atlas
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark       105 Jul 28 05:36 job.xml
[2025-07-28 07:03:07] -rw-r--r-- 2 mark mark 229323849 Jul 28 05:36 EVNT.45743347._002442.pool.root.1
[2025-07-28 07:03:07] -rw-r--r-- 2 mark mark     15095 Jul 28 05:36 start_atlas.sh
[2025-07-28 07:03:07] drwxrwx--x 2 mark mark      4096 Jul 28 05:36 shared
[2025-07-28 07:03:07] -rw-r--r-- 2 mark mark    542896 Jul 28 05:36 input.tar.gz
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark      9229 Jul 28 05:36 init_data.xml
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark         0 Jul 28 05:36 boinc_setup_complete
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark         0 Jul 28 05:36 boinc_lockfile
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark      2561 Jul 28 05:37 pandaJob.out
[2025-07-28 07:03:07] -rw------- 1 mark mark    978460 Jul 28 05:37 agis_schedconf.cvmfs.json
[2025-07-28 07:03:07] -rw------- 1 mark mark   1593052 Jul 28 05:37 agis_ddmendpoints.agis.ALL.json
[2025-07-28 07:03:07] drwx------ 4 mark mark      4096 Jul 28 05:37 pilot3
[2025-07-28 07:03:07] -rw------- 1 mark mark 212724861 Jul 28 07:01 HITS.45743349._055412.pool.root.1
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark       530 Jul 28 07:01 boinc_task_state.xml
[2025-07-28 07:03:07] -rw------- 1 mark mark      1029 Jul 28 07:02 memory_monitor_summary.json
[2025-07-28 07:03:07] -rw------- 1 mark mark    356229 Jul 28 07:02 log.45743349._055412.job.log.tgz.1
[2025-07-28 07:03:07] -rw------- 1 mark mark      7778 Jul 28 07:02 heartbeat.json
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark      8192 Jul 28 07:03 boinc_mmap_file
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark        27 Jul 28 07:03 wrapper_checkpoint.txt
[2025-07-28 07:03:07] -rw------- 1 mark mark        95 Jul 28 07:03 pilot_heartbeat.json
[2025-07-28 07:03:07] -rw------- 1 mark mark       822 Jul 28 07:03 pilotlog.txt
[2025-07-28 07:03:07] -rw------- 1 mark mark    501003 Jul 28 07:03 log.45743349._055412.job.log.1
[2025-07-28 07:03:07] -rw------- 1 mark mark       357 Jul 28 07:03 output.list
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark       620 Jul 28 07:03 runtime_log
[2025-07-28 07:03:07] -rw------- 1 mark mark    880640 Jul 28 07:03 result.tar.gz
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark      8716 Jul 28 07:03 runtime_log.err
[2025-07-28 07:03:07] -rw------- 1 mark mark       645 Jul 28 07:03 chLNDm2BN07n9Rq4apOajLDm4fhM0noT9bVof3QYDm552KDmGiOo9m.diag
[2025-07-28 07:03:07] -rw-rw-r-- 1 mark mark     21978 Jul 28 07:03 stderr.txt
[2025-07-28 07:03:07] HITS file was successfully produced:
[2025-07-28 07:03:07] -rw------- 1 mark mark 212724861 Jul 28 07:01 shared/HITS.pool.root.1
[2025-07-28 07:03:07]  *** Contents of shared directory: ***
[2025-07-28 07:03:07] total 433108
[2025-07-28 07:03:07] -rw-r--r-- 2 mark mark 229323849 Jul 28 05:36 ATLAS.root_0
[2025-07-28 07:03:07] -rw-r--r-- 2 mark mark     15095 Jul 28 05:36 start_atlas.sh
[2025-07-28 07:03:07] -rw-r--r-- 2 mark mark    542896 Jul 28 05:36 input.tar.gz
[2025-07-28 07:03:07] -rw------- 1 mark mark 212724861 Jul 28 07:01 HITS.pool.root.1
[2025-07-28 07:03:07] -rw------- 1 mark mark    880640 Jul 28 07:03 result.tar.gz
07:03:09 (2034653): run_atlas exited; CPU time 56633.199683
07:03:09 (2034653): called boinc_finish(0)

</stderr_txt>
]]>

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