Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:31:49 (1214646): wrapper (7.7.26015): starting
23:31:49 (1214646): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 23:31:49] Arguments: --nthreads 12
[2025-07-27 23:31:49] Threads: 12
[2025-07-27 23:31:49] Checking for CVMFS
[2025-07-27 23:31:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:31:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:31:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:31:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:31:50] 2.12.6.0 418423 19269 321952 148834 0 65 29197176 32935936 9204 16776704 0 34564739 99.647 55511501 32976 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 23:31:50] CVMFS is ok
[2025-07-27 23:31:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:31:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:31:50] Further information can be found at the LHC@home message board.
[2025-07-27 23:31:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:31:50] Checking for apptainer binary...
[2025-07-27 23:31:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:31:50] Running /usr/bin/apptainer --version
[2025-07-27 23:31:50] apptainer version 1.4.1-1.el9
[2025-07-27 23:31:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:31:50] c6-1-26-2.aglt2.org
[2025-07-27 23:31:50] apptainer works
[2025-07-27 23:31:50] Set ATHENA_PROC_NUMBER=12
[2025-07-27 23:31:50] Set ATHENA_CORE_NUMBER=12
[2025-07-27 23:31:50] Starting ATLAS job with PandaID=6747973791
[2025-07-27 23:31:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:47:59]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:47:59]  lfn=log.45743349._055472.job.log.tgz.1
[2025-07-28 00:47:59]  mtime=0
[2025-07-28 00:47:59]  protocol_id=None
[2025-07-28 00:47:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 00:47:59]  replicas=None
[2025-07-28 00:47:59]  scope=mc23_13p6TeV
[2025-07-28 00:47:59]  status=None
[2025-07-28 00:47:59]  status_code=0
[2025-07-28 00:47:59]  storage_token=
[2025-07-28 00:47:59]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747973791/log.45743349._055472.job.log.tgz.1
[2025-07-28 00:47:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/c8/log.45743349._055472.job.log.tgz.1
[2025-07-28 00:47:59]  workdir=None
[2025-07-28 00:47:59] ]
[2025-07-28 00:47:59] 2025-07-28 04:47:19,055 | INFO     | transferring file log.45743349._055472.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747973791/log.45743349._055472.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 00:47:59] 2025-07-28 04:47:19,055 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747973791/log.45743349._055472.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._055472.job
[2025-07-28 00:47:59] 2025-07-28 04:47:19,073 | INFO     | adding to output.list: log.45743349._055472.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/c8/log.45743349._055472.job.log.tg
[2025-07-28 00:47:59] 2025-07-28 04:47:19,074 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:47:59] 2025-07-28 04:47:19,074 | INFO     | summary of transferred files:
[2025-07-28 00:47:59] 2025-07-28 04:47:19,074 | INFO     |  -- lfn=log.45743349._055472.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:47:59] 2025-07-28 04:47:19,075 | INFO     | stage-out finished correctly
[2025-07-28 00:47:59] 2025-07-28 04:47:19,167 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:47:59] 2025-07-28 04:47:21,108 | INFO     | monitor loop #331: job 0:6747973791 is in state 'finished'
[2025-07-28 00:47:59] 2025-07-28 04:47:21,109 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:47:59] 2025-07-28 04:47:21,999 | INFO     | job 6747973791 has state=finished
[2025-07-28 00:47:59] 2025-07-28 04:47:22,000 | INFO     | preparing for final server update for job 6747973791 in state='finished'
[2025-07-28 00:47:59] 2025-07-28 04:47:22,000 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:47:59] 2025-07-28 04:47:22,000 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:47:59] 2025-07-28 04:47:22,000 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:47:59] 2025-07-28 04:47:22,000 | INFO     | job 6747973791 has finished - writing final server update
[2025-07-28 00:47:59] 2025-07-28 04:47:22,001 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:47:59] 2025-07-28 04:47:22,001 | INFO     | executing command: lscpu
[2025-07-28 00:47:59] 2025-07-28 04:47:22,063 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:47:59] 2025-07-28 04:47:23,612 | INFO     | monitor loop #332: job 0:6747973791 is in state 'finished'
[2025-07-28 00:47:59] 2025-07-28 04:47:23,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:47:59] 2025-07-28 04:47:26,115 | INFO     | monitor loop #333: job 0:6747973791 is in state 'finished'
[2025-07-28 00:47:59] 2025-07-28 04:47:26,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:47:59] 2025-07-28 04:47:27,374 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 00:47:59] 2025-07-28 04:47:27,378 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2566.9740000000006
[2025-07-28 00:47:59] 2025-07-28 04:47:27,387 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747973791/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:47:59] 2025-07-28 04:47:27,389 | INFO     | extracted standard info from prmon json
[2025-07-28 00:47:59] 2025-07-28 04:47:27,389 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:47:59] 2025-07-28 04:47:27,389 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:47:59] 2025-07-28 04:47:27,389 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:47:59] 2025-07-28 04:47:27,389 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:47:59] 2025-07-28 04:47:27,391 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:47:59] 2025-07-28 04:47:27,392 | INFO     | sum of square deviations: 93240818.0
[2025-07-28 00:47:59] 2025-07-28 04:47:27,392 | INFO     | sum of deviations: -13412929612.000002
[2025-07-28 00:47:59] 2025-07-28 04:47:27,392 | INFO     | mean x: 1753675871.0
[2025-07-28 00:47:59] 2025-07-28 04:47:27,392 | INFO     | mean y: 2545711.8656716417
[2025-07-28 00:47:59] 2025-07-28 04:47:27,392 | INFO     | -- intersect: 252273294988.06564
[2025-07-28 00:47:59] 2025-07-28 04:47:27,392 | INFO     | intersect: 252273294988.06564
[2025-07-28 00:47:59] 2025-07-28 04:47:27,393 | INFO     | chi2: 0.1596322594417249
[2025-07-28 00:47:59] 2025-07-28 04:47:27,393 | INFO     | -- intersect: 252273294988.06564
[2025-07-28 00:47:59] 2025-07-28 04:47:27,393 | INFO     | current memory leak: -143.85 B/s (using 67 data points, chi2=0.16)
[2025-07-28 00:47:59] 2025-07-28 04:47:27,393 | INFO     | could have reported an average CPU frequency of 2610 MHz (6 samples)
[2025-07-28 00:47:59] 2025-07-28 04:47:27,393 | INFO     | ..............................
[2025-07-28 00:47:59] 2025-07-28 04:47:27,393 | INFO     | . Timing measurements:
[2025-07-28 00:47:59] 2025-07-28 04:47:27,394 | INFO     | . get job = 0 s
[2025-07-28 00:47:59] 2025-07-28 04:47:27,394 | INFO     | . initial setup = 2 s
[2025-07-28 00:47:59] 2025-07-28 04:47:27,394 | INFO     | . payload setup = 8 s
[2025-07-28 00:47:59] 2025-07-28 04:47:27,394 | INFO     | . stage-in = 0 s
[2025-07-28 00:47:59] 2025-07-28 04:47:27,394 | INFO     | . payload execution = 4487 s
[2025-07-28 00:47:59] 2025-07-28 04:47:27,394 | INFO     | . stage-out = 0 s
[2025-07-28 00:47:59] 2025-07-28 04:47:27,394 | INFO     | . log creation = 0 s
[2025-07-28 00:47:59] 2025-07-28 04:47:27,394 | INFO     | ..............................
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | 
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | job summary report
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | --------------------------------------------------
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | PanDA job id: 6747973791
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | task id: 45743349
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | errors: (none)
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | pilot state: finished 
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | transexitcode: 0
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | exeerrorcode: 0
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | exeerrordiag: 
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | exitcode: 0
[2025-07-28 00:47:59] 2025-07-28 04:47:27,482 | INFO     | exitmsg: OK
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | cpuconsumptiontime: 47626 s
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | nevents: 400
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | neventsw: 0
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | pid: 1226746
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | pgrp: 1226746
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | corecount: 12
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | event service: False
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | sizes: {0: 2397254, 1: 2397453, 6: 2397715, 12: 2397743, 4499: 2423762, 4500: 2432944, 4509: 2433082}
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | --------------------------------------------------
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | 
[2025-07-28 00:47:59] 2025-07-28 04:47:27,483 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 00:47:59] 2025-07-28 04:47:27,502 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,503 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,503 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,503 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,503 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,503 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,503 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,503 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:47:59] 2025-07-28 04:47:27,504 | INFO     | job 6747973791 has completed (purged errors)
[2025-07-28 00:47:59] 2025-07-28 04:47:27,505 | INFO     | overall cleanup function is called
[2025-07-28 00:47:59] 2025-07-28 04:47:28,512 | INFO     | --- collectZombieJob: --- 10, [1226746]
[2025-07-28 00:47:59] 2025-07-28 04:47:28,512 | INFO     | zombie collector waiting for pid 1226746
[2025-07-28 00:47:59] 2025-07-28 04:47:28,512 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:47:59] 2025-07-28 04:47:28,513 | INFO     | collected zombie processes
[2025-07-28 00:47:59] 2025-07-28 04:47:28,513 | INFO     | will attempt to kill all subprocesses of pid=1226746
[2025-07-28 00:47:59] 2025-07-28 04:47:28,822 | INFO     | process IDs to be killed: [1226746] (in reverse order)
[2025-07-28 00:47:59] 2025-07-28 04:47:28,922 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:47:59] 2025-07-28 04:47:28,923 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:47:59] 2025-07-28 04:47:28,934 | INFO     | did not find any defunct processes belonging to 1226746
[2025-07-28 00:47:59] 2025-07-28 04:47:28,945 | INFO     | did not find any defunct processes belonging to 1226746
[2025-07-28 00:47:59] 2025-07-28 04:47:28,945 | INFO     | ready for new job
[2025-07-28 00:47:59] 2025-07-28 04:47:28,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:47:59] 2025-07-28 04:47:28,947 | INFO     | ***************************************
[2025-07-28 00:47:59] 2025-07-28 04:47:28,947 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:47:59] 2025-07-28 04:47:28,947 | INFO     | ***************************************
[2025-07-28 00:47:59] 2025-07-28 04:47:28,947 | INFO     | 
[2025-07-28 00:47:59] 2025-07-28 04:47:28,963 | INFO     | architecture information:
[2025-07-28 00:47:59] 2025-07-28 04:47:28,963 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:47:59] 2025-07-28 04:47:28,980 | INFO     | cat /etc/os-release:
[2025-07-28 00:47:59] NAME="CentOS Linux"
[2025-07-28 00:47:59] VERSION="7 (Core)"
[2025-07-28 00:47:59] ID="centos"
[2025-07-28 00:47:59] ID_LIKE="rhel fedora"
[2025-07-28 00:47:59] VERSION_ID="7"
[2025-07-28 00:47:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:47:59] ANSI_COLOR="0;31"
[2025-07-28 00:47:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:47:59] HOME_URL="https://www.centos.org/"
[2025-07-28 00:47:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:47:59] 
[2025-07-28 00:47:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:47:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:47:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:47:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:47:59] 
[2025-07-28 00:47:59] 2025-07-28 04:47:28,980 | INFO     | ***************************************
[2025-07-28 00:47:59] 2025-07-28 04:47:29,483 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 00:47:59] 2025-07-28 04:47:29,501 | INFO     | sufficient remaining disk space (76524027904 B)
[2025-07-28 00:47:59] 2025-07-28 04:47:29,501 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:47:59] 2025-07-28 04:47:29,501 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:47:59] 2025-07-28 04:47:29,501 | INFO     | update_server=False
[2025-07-28 00:47:59] 2025-07-28 04:47:29,502 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:47:59] 2025-07-28 04:47:29,625 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:47:59] 2025-07-28 04:47:29,625 | INFO     | aborting loop
[2025-07-28 00:47:59] 2025-07-28 04:47:29,681 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:47:59] 2025-07-28 04:47:29,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:47:59] 2025-07-28 04:47:30,114 | INFO     | all data control threads have been joined
[2025-07-28 00:47:59] 2025-07-28 04:47:30,262 | INFO     | all payload control threads have been joined
[2025-07-28 00:47:59] 2025-07-28 04:47:30,507 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:30,559 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:30,629 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:30,715 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:30,969 | INFO     | all job control threads have been joined
[2025-07-28 00:47:59] 2025-07-28 04:47:31,042 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:31,119 | INFO     | [data] control thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:31,214 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:31,236 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:31,267 | INFO     | [payload] control thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:31,379 | INFO     | [job] validate thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:31,688 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:31,975 | INFO     | [job] control thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:32,051 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:32,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:47:59] 2025-07-28 04:47:33,500 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:33,767 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:39,898 | INFO     | job.realtimelogging is not enabled
[2025-07-28 00:47:59] 2025-07-28 04:47:40,903 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:47:59] 2025-07-28 04:47:41,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140682935363392)>', '<ExcThread(monitor, started 140682433906432)>']
[2025-07-28 00:47:59] 2025-07-28 04:47:46,207 | INFO     | all workflow threads have been joined
[2025-07-28 00:47:59] 2025-07-28 04:47:46,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:47:59] 2025-07-28 04:47:46,208 | INFO     | traces error code: 0
[2025-07-28 00:47:59] 2025-07-28 04:47:46,208 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:47:59] 2025-07-28 04:47:58,993 | INFO     | PID=1219331 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:47:59] 2025-07-28 04:47:58,993 | INFO     | .. there are 11 such processes running
[2025-07-28 00:47:59] 2025-07-28 04:47:58,993 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:47:59] 2025-07-28 04:47:58,993 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:47:59] 2025-07-28 04:47:58,993 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:47:59] 2025-07-28 04:47:58,994 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:47:59] 2025-07-28 04:47:58,994 | INFO     | [monitor] control thread has ended
[2025-07-28 00:47:59] 2025-07-28 04:47:59,153 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:47:59] 2025-07-28 04:47:59,157 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:47:59] 2025-07-28 04:47:59,161 [wrapper] pilotpid: 1219331
[2025-07-28 00:47:59] 2025-07-28 04:47:59,165 [wrapper] Pilot exit status: 0
[2025-07-28 00:47:59] 2025-07-28 04:47:59,179 [wrapper] pandaids: 6747973791
[2025-07-28 00:47:59] 2025-07-28 04:47:59,251 [wrapper] cleanup supervisor_pilot 1500616 1219332
[2025-07-28 00:47:59] 2025-07-28 04:47:59,256 [wrapper] Test setup, not cleaning
[2025-07-28 00:47:59] 2025-07-28 04:47:59,261 [wrapper] apfmon messages muted
[2025-07-28 00:47:59] 2025-07-28 04:47:59,264 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:47:59] 2025-07-28 04:47:59,268 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:47:59]  *** Error codes and diagnostics ***
[2025-07-28 00:47:59]     "exeErrorCode": 0,
[2025-07-28 00:47:59]     "exeErrorDiag": "",
[2025-07-28 00:47:59]     "pilotErrorCode": 0,
[2025-07-28 00:47:59]     "pilotErrorDiag": "",
[2025-07-28 00:47:59]  *** Listing of results directory ***
[2025-07-28 00:47:59] total 358252
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:27 pilot3.tar.gz
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 16:32 queuedata.json
[2025-07-28 00:47:59] -rwx------. 1 boincer umatlas     36292 Jul 27 16:33 runpilot2-wrapper.sh
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:47:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:31 run_atlas
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:31 job.xml
[2025-07-28 00:47:59] -rw-r--r--. 2 boincer umatlas 146823401 Jul 27 23:31 EVNT.45743347._002530.pool.root.1
[2025-07-28 00:47:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:31 start_atlas.sh
[2025-07-28 00:47:59] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:31 shared
[2025-07-28 00:47:59] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 23:31 input.tar.gz
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:31 boinc_lockfile
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 23:31 pandaJob.out
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas    980117 Jul 27 23:32 agis_schedconf.cvmfs.json
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:32 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:47:59] drwx------. 4 boincer umatlas      4096 Jul 27 23:32 pilot3
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas      6843 Jul 28 00:46 init_data.xml
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas 214530024 Jul 28 00:46 HITS.45743349._055472.pool.root.1
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas       530 Jul 28 00:46 boinc_task_state.xml
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas      1036 Jul 28 00:47 memory_monitor_summary.json
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas        95 Jul 28 00:47 pilot_heartbeat.json
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas    367713 Jul 28 00:47 log.45743349._055472.job.log.tgz.1
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas      7826 Jul 28 00:47 heartbeat.json
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 00:47 boinc_mmap_file
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas        27 Jul 28 00:47 wrapper_checkpoint.txt
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas       823 Jul 28 00:47 pilotlog.txt
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas    446343 Jul 28 00:47 log.45743349._055472.job.log.1
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas       357 Jul 28 00:47 output.list
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas       620 Jul 28 00:47 runtime_log
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas    829440 Jul 28 00:47 result.tar.gz
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 00:47 runtime_log.err
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas       655 Jul 28 00:47 ra0KDm4EN07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5NWLDmAssTOn.diag
[2025-07-28 00:47:59] -rw-r--r--. 1 boincer umatlas     21664 Jul 28 00:47 stderr.txt
[2025-07-28 00:47:59] HITS file was successfully produced:
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas 214530024 Jul 28 00:46 shared/HITS.pool.root.1
[2025-07-28 00:47:59]  *** Contents of shared directory: ***
[2025-07-28 00:47:59] total 354252
[2025-07-28 00:47:59] -rw-r--r--. 2 boincer umatlas 146823401 Jul 27 23:31 ATLAS.root_0
[2025-07-28 00:47:59] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:31 start_atlas.sh
[2025-07-28 00:47:59] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 23:31 input.tar.gz
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas 214530024 Jul 28 00:46 HITS.pool.root.1
[2025-07-28 00:47:59] -rw-------. 1 boincer umatlas    829440 Jul 28 00:47 result.tar.gz
00:48:00 (1214646): run_atlas exited; CPU time 47664.278145
00:48:00 (1214646): called boinc_finish(0)

</stderr_txt>
]]>

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