Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:44:55 (824344): wrapper (7.7.26015): starting
17:44:55 (824344): wrapper: running run_atlas (--nthreads 4)
[2025-07-28 17:44:55] Arguments: --nthreads 4
[2025-07-28 17:44:55] Threads: 4
[2025-07-28 17:44:55] Checking for CVMFS
[2025-07-28 17:44:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 17:44:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 17:44:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 17:44:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 17:44:55] 2.9.2.0 3292553 5714 92960 148853 2 57 18517861 36864000 0 130560 0 4524793 99.991 203041 1761 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 17:44:55] CVMFS is ok
[2025-07-28 17:44:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 17:44:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 17:44:55] Further information can be found at the LHC@home message board.
[2025-07-28 17:44:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 17:44:55] Checking for apptainer binary...
[2025-07-28 17:44:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 17:44:55] Running /usr/bin/apptainer --version
[2025-07-28 17:44:55] apptainer version 1.4.1-1.1
[2025-07-28 17:44:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 17:44:55] magicA254
[2025-07-28 17:44:55] apptainer works
[2025-07-28 17:44:55] Set ATHENA_PROC_NUMBER=4
[2025-07-28 17:44:55] Set ATHENA_CORE_NUMBER=4
[2025-07-28 17:44:55] Starting ATLAS job with PandaID=6747877121
[2025-07-28 17:44:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 19:08:09]  *** The last 200 lines of the pilot log: ***
[2025-07-28 19:08:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 19:08:09]  replicas=None
[2025-07-28 19:08:09]  scope=mc23_13p6TeV
[2025-07-28 19:08:09]  status=None
[2025-07-28 19:08:09]  status_code=0
[2025-07-28 19:08:09]  storage_token=
[2025-07-28 19:08:09]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6747877121/log.45743349._055372.job.log.tgz.1
[2025-07-28 19:08:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/81/log.45743349._055372.job.log.tgz.1
[2025-07-28 19:08:09]  workdir=None
[2025-07-28 19:08:09] ]
[2025-07-28 19:08:09] 2025-07-28 17:07:27,719 | INFO     | transferring file log.45743349._055372.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6747877121/log.45743349._055372.job.log.tgz.1 to /local/data/boinc/
[2025-07-28 19:08:09] 2025-07-28 17:07:27,720 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6747877121/log.45743349._055372.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0553
[2025-07-28 19:08:09] 2025-07-28 17:07:27,738 | INFO     | adding to output.list: log.45743349._055372.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/81/log.45743349._055372.job.log.tg
[2025-07-28 19:08:09] 2025-07-28 17:07:27,739 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 19:08:09] 2025-07-28 17:07:27,739 | INFO     | summary of transferred files:
[2025-07-28 19:08:09] 2025-07-28 17:07:27,739 | INFO     |  -- lfn=log.45743349._055372.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 19:08:09] 2025-07-28 17:07:27,739 | INFO     | stage-out finished correctly
[2025-07-28 19:08:09] 2025-07-28 17:07:28,687 | INFO     | monitor loop #381: job 0:6747877121 is in state 'finished'
[2025-07-28 19:08:09] 2025-07-28 17:07:28,687 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 19:08:09] 2025-07-28 17:07:29,535 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 19:08:09] 2025-07-28 17:07:29,916 | INFO     | 4947s have passed since pilot start - server update state is 'RUNNING'
[2025-07-28 19:08:09] 2025-07-28 17:07:31,191 | INFO     | monitor loop #382: job 0:6747877121 is in state 'finished'
[2025-07-28 19:08:09] 2025-07-28 17:07:31,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 19:08:09] 2025-07-28 17:07:31,920 | INFO     | job 6747877121 has state=finished
[2025-07-28 19:08:09] 2025-07-28 17:07:31,920 | INFO     | preparing for final server update for job 6747877121 in state='finished'
[2025-07-28 19:08:09] 2025-07-28 17:07:32,539 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 19:08:09] 2025-07-28 17:07:32,539 | INFO     | this job has now completed (state=finished)
[2025-07-28 19:08:09] 2025-07-28 17:07:32,539 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 19:08:09] 2025-07-28 17:07:32,539 | INFO     | log transfer has been attempted: DONE
[2025-07-28 19:08:09] 2025-07-28 17:07:32,539 | INFO     | job 6747877121 has finished - writing final server update
[2025-07-28 19:08:09] 2025-07-28 17:07:32,539 | INFO     | total number of processed events: 400 (read)
[2025-07-28 19:08:09] 2025-07-28 17:07:32,540 | INFO     | executing command: lscpu
[2025-07-28 19:08:09] 2025-07-28 17:07:32,560 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 19:08:09] 2025-07-28 17:07:33,695 | INFO     | monitor loop #383: job 0:6747877121 is in state 'finished'
[2025-07-28 19:08:09] 2025-07-28 17:07:33,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 19:08:09] 2025-07-28 17:07:36,199 | INFO     | monitor loop #384: job 0:6747877121 is in state 'finished'
[2025-07-28 19:08:09] 2025-07-28 17:07:36,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 19:08:09] 2025-07-28 17:07:37,015 | INFO     | PID=828038 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 19:08:09] 2025-07-28 17:07:37,419 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 19:08:09] 2025-07-28 17:07:37,420 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3351.9535625000003
[2025-07-28 19:08:09] 2025-07-28 17:07:37,422 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6747877121/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 19:08:09] 2025-07-28 17:07:37,422 | INFO     | extracted standard info from prmon json
[2025-07-28 19:08:09] 2025-07-28 17:07:37,422 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 19:08:09] 2025-07-28 17:07:37,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 19:08:09] 2025-07-28 17:07:37,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 19:08:09] 2025-07-28 17:07:37,422 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 19:08:09] 2025-07-28 17:07:37,423 | INFO     | fitting pss+swap vs Time
[2025-07-28 19:08:09] 2025-07-28 17:07:37,423 | INFO     | sum of square deviations: 125630262.5
[2025-07-28 19:08:09] 2025-07-28 17:07:37,423 | INFO     | sum of deviations: -865559.4999998435
[2025-07-28 19:08:09] 2025-07-28 17:07:37,423 | INFO     | mean x: 1753720058.5
[2025-07-28 19:08:09] 2025-07-28 17:07:37,423 | INFO     | mean y: 2403768.878378378
[2025-07-28 19:08:09] 2025-07-28 17:07:37,423 | INFO     | -- intersect: 14486439.301636918
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | intersect: 14486439.301636918
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | chi2: 0.04662587326110669
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | -- intersect: 14486439.301636918
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | current memory leak: -0.01 B/s (using 74 data points, chi2=0.05)
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | could have reported an average CPU frequency of 3609 MHz (6 samples)
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | ..............................
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | . Timing measurements:
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | . get job = 0 s
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | . initial setup = 1 s
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | . payload setup = 5 s
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | . stage-in = 0 s
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | . payload execution = 4920 s
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | . stage-out = 0 s
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | . log creation = 0 s
[2025-07-28 19:08:09] 2025-07-28 17:07:37,424 | INFO     | ..............................
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | 
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | job summary report
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | --------------------------------------------------
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | PanDA job id: 6747877121
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | task id: 45743349
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | errors: (none)
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | pilot state: finished 
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | transexitcode: 0
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | exeerrorcode: 0
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | exeerrordiag: 
[2025-07-28 19:08:09] 2025-07-28 17:07:37,843 | INFO     | exitcode: 0
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | exitmsg: OK
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | cpuconsumptiontime: 18706 s
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | nevents: 400
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | neventsw: 0
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | pid: 834663
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | pgrp: 834663
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | corecount: 4
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | event service: False
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | sizes: {0: 2391862, 4: 2392124, 11: 2392152, 4929: 2418567, 4930: 2427571, 4932: 2427627, 4940: 2427949}
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | --------------------------------------------------
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | 
[2025-07-28 19:08:09] 2025-07-28 17:07:37,844 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 19:08:09] 2025-07-28 17:07:37,866 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,866 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,866 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,866 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | job 6747877121 has completed (purged errors)
[2025-07-28 19:08:09] 2025-07-28 17:07:37,867 | INFO     | overall cleanup function is called
[2025-07-28 19:08:09] 2025-07-28 17:07:38,874 | INFO     | --- collectZombieJob: --- 10, [834663]
[2025-07-28 19:08:09] 2025-07-28 17:07:38,874 | INFO     | zombie collector waiting for pid 834663
[2025-07-28 19:08:09] 2025-07-28 17:07:38,874 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 19:08:09] 2025-07-28 17:07:38,874 | INFO     | collected zombie processes
[2025-07-28 19:08:09] 2025-07-28 17:07:38,874 | INFO     | will attempt to kill all subprocesses of pid=834663
[2025-07-28 19:08:09] 2025-07-28 17:07:38,919 | INFO     | process IDs to be killed: [834663] (in reverse order)
[2025-07-28 19:08:09] 2025-07-28 17:07:38,952 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 19:08:09] 2025-07-28 17:07:38,952 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 19:08:09] 2025-07-28 17:07:38,954 | INFO     | did not find any defunct processes belonging to 834663
[2025-07-28 19:08:09] 2025-07-28 17:07:38,955 | INFO     | did not find any defunct processes belonging to 834663
[2025-07-28 19:08:09] 2025-07-28 17:07:38,955 | INFO     | ready for new job
[2025-07-28 19:08:09] 2025-07-28 17:07:38,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 19:08:09] 2025-07-28 17:07:38,956 | INFO     | ***************************************
[2025-07-28 19:08:09] 2025-07-28 17:07:38,956 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 19:08:09] 2025-07-28 17:07:38,956 | INFO     | ***************************************
[2025-07-28 19:08:09] 2025-07-28 17:07:38,956 | INFO     | 
[2025-07-28 19:08:09] 2025-07-28 17:07:38,957 | INFO     | architecture information:
[2025-07-28 19:08:09] 2025-07-28 17:07:38,957 | INFO     | executing command: cat /etc/os-release
[2025-07-28 19:08:09] 2025-07-28 17:07:38,971 | INFO     | cat /etc/os-release:
[2025-07-28 19:08:09] NAME="CentOS Linux"
[2025-07-28 19:08:09] VERSION="7 (Core)"
[2025-07-28 19:08:09] ID="centos"
[2025-07-28 19:08:09] ID_LIKE="rhel fedora"
[2025-07-28 19:08:09] VERSION_ID="7"
[2025-07-28 19:08:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 19:08:09] ANSI_COLOR="0;31"
[2025-07-28 19:08:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 19:08:09] HOME_URL="https://www.centos.org/"
[2025-07-28 19:08:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 19:08:09] 
[2025-07-28 19:08:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 19:08:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 19:08:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 19:08:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 19:08:09] 
[2025-07-28 19:08:09] 2025-07-28 17:07:38,971 | INFO     | ***************************************
[2025-07-28 19:08:09] 2025-07-28 17:07:39,475 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 19:08:09] 2025-07-28 17:07:39,491 | INFO     | sufficient remaining disk space (338751913984 B)
[2025-07-28 19:08:09] 2025-07-28 17:07:39,492 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 19:08:09] 2025-07-28 17:07:39,492 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 19:08:09] 2025-07-28 17:07:39,492 | INFO     | update_server=False
[2025-07-28 19:08:09] 2025-07-28 17:07:39,492 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 19:08:09] 2025-07-28 17:07:39,664 | INFO     | all payload control threads have been joined
[2025-07-28 19:08:09] 2025-07-28 17:07:39,674 | INFO     | all data control threads have been joined
[2025-07-28 19:08:09] 2025-07-28 17:07:39,707 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 19:08:09] 2025-07-28 17:07:39,707 | INFO     | aborting loop
[2025-07-28 19:08:09] 2025-07-28 17:07:40,088 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 19:08:09] 2025-07-28 17:07:40,498 | INFO     | [job] retrieve thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:40,504 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:40,526 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:40,612 | INFO     | [data] copytool_in thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:40,670 | INFO     | [payload] control thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:40,679 | INFO     | [data] control thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:40,713 | INFO     | [job] job monitor thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:40,798 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 19:08:09] 2025-07-28 17:07:41,015 | INFO     | all job control threads have been joined
[2025-07-28 19:08:09] 2025-07-28 17:07:41,053 | INFO     | [payload] failed_post thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:41,118 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:41,737 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:41,798 | INFO     | [job] validate thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:42,021 | INFO     | [job] control thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:42,063 | INFO     | [payload] validate_post thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:42,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 19:08:09] 2025-07-28 17:07:42,804 | INFO     | [data] copytool_out thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:43,482 | INFO     | [job] queue monitor thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:44,095 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 19:08:09] 2025-07-28 17:07:44,881 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718022543168)>', '<ExcThread(monitor, started 140717070472960)>']
[2025-07-28 19:08:09] 2025-07-28 17:07:49,907 | INFO     | all workflow threads have been joined
[2025-07-28 19:08:09] 2025-07-28 17:07:49,907 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 19:08:09] 2025-07-28 17:07:49,907 | INFO     | traces error code: 0
[2025-07-28 19:08:09] 2025-07-28 17:07:49,907 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 19:08:09] 2025-07-28 17:08:09,137 | INFO     | PID=828038 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 19:08:09] 2025-07-28 17:08:09,137 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 19:08:09] 2025-07-28 17:08:09,137 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 19:08:09] 2025-07-28 17:08:09,137 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 19:08:09] 2025-07-28 17:08:09,137 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 19:08:09] 2025-07-28 17:08:09,137 | INFO     | [monitor] control thread has ended
[2025-07-28 19:08:09] 2025-07-28 17:08:09,215 [wrapper] ==== pilot stdout END ====
[2025-07-28 19:08:09] 2025-07-28 17:08:09,219 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 19:08:09] 2025-07-28 17:08:09,223 [wrapper] pilotpid: 828038
[2025-07-28 19:08:09] 2025-07-28 17:08:09,227 [wrapper] Pilot exit status: 0
[2025-07-28 19:08:09] 2025-07-28 17:08:09,238 [wrapper] pandaids: 6747877121
[2025-07-28 19:08:09] 2025-07-28 17:08:09,261 [wrapper] cleanup supervisor_pilot  847076 828039
[2025-07-28 19:08:09] 2025-07-28 17:08:09,264 [wrapper] Test setup, not cleaning
[2025-07-28 19:08:09] 2025-07-28 17:08:09,268 [wrapper] apfmon messages muted
[2025-07-28 19:08:09] 2025-07-28 17:08:09,272 [wrapper] ==== wrapper stdout END ====
[2025-07-28 19:08:09] 2025-07-28 17:08:09,276 [wrapper] ==== wrapper stderr END ====
[2025-07-28 19:08:09]  *** Error codes and diagnostics ***
[2025-07-28 19:08:09]     "exeErrorCode": 0,
[2025-07-28 19:08:09]     "exeErrorDiag": "",
[2025-07-28 19:08:09]     "pilotErrorCode": 0,
[2025-07-28 19:08:09]     "pilotErrorDiag": "",
[2025-07-28 19:08:09]  *** Listing of results directory ***
[2025-07-28 19:08:09] total 435208
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc    530466 Jul 27 22:16 pilot3.tar.gz
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc      5112 Jul 27 22:27 queuedata.json
[2025-07-28 19:08:09] -rwx------ 1 boinc boinc     36292 Jul 27 22:27 runpilot2-wrapper.sh
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc       100 Jul 28 17:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 19:08:09] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 17:44 run_atlas
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc       105 Jul 28 17:44 job.xml
[2025-07-28 19:08:09] -rw-r--r-- 2 boinc boinc 228641272 Jul 28 17:44 EVNT.45743347._001472.pool.root.1
[2025-07-28 19:08:09] -rw-r--r-- 2 boinc boinc    542893 Jul 28 17:44 input.tar.gz
[2025-07-28 19:08:09] -rw-r--r-- 2 boinc boinc     15095 Jul 28 17:44 start_atlas.sh
[2025-07-28 19:08:09] drwxrwx--x 2 boinc boinc      4096 Jul 28 17:44 shared
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc         0 Jul 28 17:44 boinc_setup_complete
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc      6457 Jul 28 17:44 init_data.xml
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc         0 Jul 28 17:44 boinc_lockfile
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc      2563 Jul 28 17:44 pandaJob.out
[2025-07-28 19:08:09] -rw------- 1 boinc boinc    977006 Jul 28 17:45 agis_schedconf.cvmfs.json
[2025-07-28 19:08:09] -rw------- 1 boinc boinc   1589827 Jul 28 17:45 agis_ddmendpoints.agis.ALL.json
[2025-07-28 19:08:09] drwx------ 4 boinc boinc      4096 Jul 28 17:45 pilot3
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc       529 Jul 28 19:07 boinc_task_state.xml
[2025-07-28 19:08:09] -rw------- 1 boinc boinc 211678668 Jul 28 19:07 HITS.45743349._055372.pool.root.1
[2025-07-28 19:08:09] -rw------- 1 boinc boinc      1024 Jul 28 19:07 memory_monitor_summary.json
[2025-07-28 19:08:09] -rw------- 1 boinc boinc    248895 Jul 28 19:07 log.45743349._055372.job.log.tgz.1
[2025-07-28 19:08:09] -rw------- 1 boinc boinc        95 Jul 28 19:07 pilot_heartbeat.json
[2025-07-28 19:08:09] -rw------- 1 boinc boinc      7775 Jul 28 19:07 heartbeat.json
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc        27 Jul 28 19:08 wrapper_checkpoint.txt
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc      8192 Jul 28 19:08 boinc_mmap_file
[2025-07-28 19:08:09] -rw------- 1 boinc boinc       746 Jul 28 19:08 pilotlog.txt
[2025-07-28 19:08:09] -rw------- 1 boinc boinc    481891 Jul 28 19:08 log.45743349._055372.job.log.1
[2025-07-28 19:08:09] -rw------- 1 boinc boinc       357 Jul 28 19:08 output.list
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc       620 Jul 28 19:08 runtime_log
[2025-07-28 19:08:09] -rw------- 1 boinc boinc    747520 Jul 28 19:08 result.tar.gz
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc      8749 Jul 28 19:08 runtime_log.err
[2025-07-28 19:08:09] -rw------- 1 boinc boinc       661 Jul 28 19:08 iZiMDm18M07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1LWLDmEVtdsn.diag
[2025-07-28 19:08:09] -rw-r--r-- 1 boinc boinc     22035 Jul 28 19:08 stderr.txt
[2025-07-28 19:08:09] HITS file was successfully produced:
[2025-07-28 19:08:09] -rw------- 1 boinc boinc 211678668 Jul 28 19:07 shared/HITS.pool.root.1
[2025-07-28 19:08:09]  *** Contents of shared directory: ***
[2025-07-28 19:08:09] total 431292
[2025-07-28 19:08:09] -rw-r--r-- 2 boinc boinc 228641272 Jul 28 17:44 ATLAS.root_0
[2025-07-28 19:08:09] -rw-r--r-- 2 boinc boinc    542893 Jul 28 17:44 input.tar.gz
[2025-07-28 19:08:09] -rw-r--r-- 2 boinc boinc     15095 Jul 28 17:44 start_atlas.sh
[2025-07-28 19:08:09] -rw------- 1 boinc boinc 211678668 Jul 28 19:07 HITS.pool.root.1
[2025-07-28 19:08:09] -rw------- 1 boinc boinc    747520 Jul 28 19:08 result.tar.gz
19:08:11 (824344): run_atlas exited; CPU time 18719.966846
19:08:11 (824344): called boinc_finish(0)

</stderr_txt>
]]>

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