Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:44:14 (24620): wrapper (7.7.26015): starting
21:44:14 (24620): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 21:44:14] Arguments: --nthreads 8
[2025-07-27 21:44:14] Threads: 8
[2025-07-27 21:44:14] Checking for CVMFS
[2025-07-27 21:44:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 21:44:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 21:44:15] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 21:44:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 21:44:15] 2.11.2.0 3213 517734 243544 148830 2 61 20224293 20275201 917 130560 0 182438379 99.988 22560396 19729 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 21:44:15] CVMFS is ok
[2025-07-27 21:44:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 21:44:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 21:44:15] Further information can be found at the LHC@home message board.
[2025-07-27 21:44:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:44:15] Checking for apptainer binary...
[2025-07-27 21:44:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 21:44:15] Running /usr/bin/apptainer --version
[2025-07-27 21:44:15] apptainer version 1.3.2-1.el7
[2025-07-27 21:44:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:44:15] c-205-38.aglt2.org
[2025-07-27 21:44:15] apptainer works
[2025-07-27 21:44:15] Set ATHENA_PROC_NUMBER=8
[2025-07-27 21:44:15] Set ATHENA_CORE_NUMBER=8
[2025-07-27 21:44:15] Starting ATLAS job with PandaID=6745061835
[2025-07-27 21:44:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:48:32]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:48:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 22:48:32]  replicas=None
[2025-07-27 22:48:32]  scope=mc23_13p6TeV
[2025-07-27 22:48:32]  status=None
[2025-07-27 22:48:32]  status_code=0
[2025-07-27 22:48:32]  storage_token=
[2025-07-27 22:48:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745061835/log.45743349._026826.job.log.tgz.1
[2025-07-27 22:48:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/f8/log.45743349._026826.job.log.tgz.1
[2025-07-27 22:48:32]  workdir=None
[2025-07-27 22:48:32] ]
[2025-07-27 22:48:32] 2025-07-28 02:47:54,857 | INFO     | transferring file log.45743349._026826.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745061835/log.45743349._026826.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:48:32] 2025-07-28 02:47:54,857 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745061835/log.45743349._026826.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._026826.job
[2025-07-27 22:48:32] 2025-07-28 02:47:54,876 | INFO     | adding to output.list: log.45743349._026826.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/f8/log.45743349._026826.job.log.tg
[2025-07-27 22:48:32] 2025-07-28 02:47:54,876 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:48:32] 2025-07-28 02:47:54,876 | INFO     | summary of transferred files:
[2025-07-27 22:48:32] 2025-07-28 02:47:54,876 | INFO     |  -- lfn=log.45743349._026826.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:48:32] 2025-07-28 02:47:54,877 | INFO     | stage-out finished correctly
[2025-07-27 22:48:32] 2025-07-28 02:47:55,033 | INFO     | monitor loop #288: job 0:6745061835 is in state 'finished'
[2025-07-27 22:48:32] 2025-07-28 02:47:55,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:48:32] 2025-07-28 02:47:57,536 | INFO     | monitor loop #289: job 0:6745061835 is in state 'finished'
[2025-07-27 22:48:32] 2025-07-28 02:47:57,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:48:32] 2025-07-28 02:47:58,116 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:48:32] 2025-07-28 02:47:58,193 | INFO     | job 6745061835 has state=finished
[2025-07-27 22:48:32] 2025-07-28 02:47:58,193 | INFO     | preparing for final server update for job 6745061835 in state='finished'
[2025-07-27 22:48:32] 2025-07-28 02:47:58,194 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:48:32] 2025-07-28 02:47:58,194 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:48:32] 2025-07-28 02:47:58,194 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:48:32] 2025-07-28 02:47:58,194 | INFO     | job 6745061835 has finished - writing final server update
[2025-07-27 22:48:32] 2025-07-28 02:47:58,195 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:48:32] 2025-07-28 02:47:58,195 | INFO     | executing command: lscpu
[2025-07-27 22:48:32] 2025-07-28 02:47:58,226 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:48:32] 2025-07-28 02:47:59,621 | INFO     | PID=28210 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 22:48:32] 2025-07-28 02:47:59,621 | INFO     | .. there are 2 such processes running
[2025-07-27 22:48:32] 2025-07-28 02:48:00,039 | INFO     | monitor loop #290: job 0:6745061835 is in state 'finished'
[2025-07-27 22:48:32] 2025-07-28 02:48:00,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:48:32] 2025-07-28 02:48:00,501 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 22:48:32] 2025-07-28 02:48:00,504 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2778.0391874999996
[2025-07-27 22:48:32] 2025-07-28 02:48:00,506 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745061835/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:48:32] 2025-07-28 02:48:00,507 | INFO     | extracted standard info from prmon json
[2025-07-27 22:48:32] 2025-07-28 02:48:00,507 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:48:32] 2025-07-28 02:48:00,507 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:48:32] 2025-07-28 02:48:00,507 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:48:32] 2025-07-28 02:48:00,507 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:48:32] 2025-07-28 02:48:00,508 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:48:32] 2025-07-28 02:48:00,508 | INFO     | sum of square deviations: 54438230.0
[2025-07-27 22:48:32] 2025-07-28 02:48:00,509 | INFO     | sum of deviations: -4829849368.5
[2025-07-27 22:48:32] 2025-07-28 02:48:00,509 | INFO     | mean x: 1753669066.5
[2025-07-27 22:48:32] 2025-07-28 02:48:00,509 | INFO     | mean y: 2597624.660714286
[2025-07-27 22:48:32] 2025-07-28 02:48:00,509 | INFO     | -- intersect: 155591003665.6545
[2025-07-27 22:48:32] 2025-07-28 02:48:00,509 | INFO     | intersect: 155591003665.6545
[2025-07-27 22:48:32] 2025-07-28 02:48:00,509 | INFO     | chi2: 0.04343834245266774
[2025-07-27 22:48:32] 2025-07-28 02:48:00,509 | INFO     | -- intersect: 155591003665.6545
[2025-07-27 22:48:32] 2025-07-28 02:48:00,509 | INFO     | current memory leak: -88.72 B/s (using 56 data points, chi2=0.04)
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | could have reported an average CPU frequency of 3027 MHz (6 samples)
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | ..............................
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | . Timing measurements:
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | . get job = 0 s
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | . initial setup = 2 s
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | . payload setup = 4 s
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | . stage-in = 0 s
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | . payload execution = 3788 s
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | . stage-out = 0 s
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | . log creation = 0 s
[2025-07-27 22:48:32] 2025-07-28 02:48:00,510 | INFO     | ..............................
[2025-07-27 22:48:32] 2025-07-28 02:48:00,566 | INFO     | 
[2025-07-27 22:48:32] 2025-07-28 02:48:00,567 | INFO     | job summary report
[2025-07-27 22:48:32] 2025-07-28 02:48:00,567 | INFO     | --------------------------------------------------
[2025-07-27 22:48:32] 2025-07-28 02:48:00,567 | INFO     | PanDA job id: 6745061835
[2025-07-27 22:48:32] 2025-07-28 02:48:00,567 | INFO     | task id: 45743349
[2025-07-27 22:48:32] 2025-07-28 02:48:00,567 | INFO     | errors: (none)
[2025-07-27 22:48:32] 2025-07-28 02:48:00,567 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:48:32] 2025-07-28 02:48:00,567 | INFO     | pilot state: finished 
[2025-07-27 22:48:32] 2025-07-28 02:48:00,568 | INFO     | transexitcode: 0
[2025-07-27 22:48:32] 2025-07-28 02:48:00,568 | INFO     | exeerrorcode: 0
[2025-07-27 22:48:32] 2025-07-28 02:48:00,568 | INFO     | exeerrordiag: 
[2025-07-27 22:48:32] 2025-07-28 02:48:00,568 | INFO     | exitcode: 0
[2025-07-27 22:48:32] 2025-07-28 02:48:00,568 | INFO     | exitmsg: OK
[2025-07-27 22:48:32] 2025-07-28 02:48:00,568 | INFO     | cpuconsumptiontime: 27888 s
[2025-07-27 22:48:32] 2025-07-28 02:48:00,568 | INFO     | nevents: 400
[2025-07-27 22:48:32] 2025-07-28 02:48:00,568 | INFO     | neventsw: 0
[2025-07-27 22:48:32] 2025-07-28 02:48:00,568 | INFO     | pid: 2245
[2025-07-27 22:48:32] 2025-07-28 02:48:00,568 | INFO     | pgrp: 2245
[2025-07-27 22:48:32] 2025-07-28 02:48:00,569 | INFO     | corecount: 8
[2025-07-27 22:48:32] 2025-07-28 02:48:00,569 | INFO     | event service: False
[2025-07-27 22:48:32] 2025-07-28 02:48:00,569 | INFO     | sizes: {0: 2397469, 3: 2397731, 11: 2397759, 3796: 2423650, 3798: 2432648, 3802: 2432704, 3804: 2433026}
[2025-07-27 22:48:32] 2025-07-28 02:48:00,569 | INFO     | --------------------------------------------------
[2025-07-27 22:48:32] 2025-07-28 02:48:00,569 | INFO     | 
[2025-07-27 22:48:32] 2025-07-28 02:48:00,569 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:48:32] 2025-07-28 02:48:00,589 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,590 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,590 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,590 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,590 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,590 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,590 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,591 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,591 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,591 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,591 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,591 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,591 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,591 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,591 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,591 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,592 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:48:32] 2025-07-28 02:48:00,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,592 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:48:32] 2025-07-28 02:48:00,592 | INFO     | job 6745061835 has completed (purged errors)
[2025-07-27 22:48:32] 2025-07-28 02:48:00,592 | INFO     | overall cleanup function is called
[2025-07-27 22:48:32] 2025-07-28 02:48:01,600 | INFO     | --- collectZombieJob: --- 10, [2245]
[2025-07-27 22:48:32] 2025-07-28 02:48:01,600 | INFO     | zombie collector waiting for pid 2245
[2025-07-27 22:48:32] 2025-07-28 02:48:01,601 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:48:32] 2025-07-28 02:48:01,601 | INFO     | collected zombie processes
[2025-07-27 22:48:32] 2025-07-28 02:48:01,601 | INFO     | will attempt to kill all subprocesses of pid=2245
[2025-07-27 22:48:32] 2025-07-28 02:48:01,708 | INFO     | process IDs to be killed: [2245] (in reverse order)
[2025-07-27 22:48:32] 2025-07-28 02:48:01,754 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:48:32] 2025-07-28 02:48:01,755 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:48:32] 2025-07-28 02:48:01,757 | INFO     | did not find any defunct processes belonging to 2245
[2025-07-27 22:48:32] 2025-07-28 02:48:01,758 | INFO     | did not find any defunct processes belonging to 2245
[2025-07-27 22:48:32] 2025-07-28 02:48:01,759 | INFO     | ready for new job
[2025-07-27 22:48:32] 2025-07-28 02:48:01,759 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:48:32] 2025-07-28 02:48:01,760 | INFO     | ***************************************
[2025-07-27 22:48:32] 2025-07-28 02:48:01,760 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:48:32] 2025-07-28 02:48:01,760 | INFO     | ***************************************
[2025-07-27 22:48:32] 2025-07-28 02:48:01,760 | INFO     | 
[2025-07-27 22:48:32] 2025-07-28 02:48:01,761 | INFO     | architecture information:
[2025-07-27 22:48:32] 2025-07-28 02:48:01,761 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:48:32] 2025-07-28 02:48:01,772 | INFO     | cat /etc/os-release:
[2025-07-27 22:48:32] NAME="CentOS Linux"
[2025-07-27 22:48:32] VERSION="7 (Core)"
[2025-07-27 22:48:32] ID="centos"
[2025-07-27 22:48:32] ID_LIKE="rhel fedora"
[2025-07-27 22:48:32] VERSION_ID="7"
[2025-07-27 22:48:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:48:32] ANSI_COLOR="0;31"
[2025-07-27 22:48:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:48:32] HOME_URL="https://www.centos.org/"
[2025-07-27 22:48:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:48:32] 
[2025-07-27 22:48:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:48:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:48:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:48:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:48:32] 
[2025-07-27 22:48:32] 2025-07-28 02:48:01,773 | INFO     | ***************************************
[2025-07-27 22:48:32] 2025-07-28 02:48:02,276 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:48:32] 2025-07-28 02:48:02,293 | INFO     | sufficient remaining disk space (32713474048 B)
[2025-07-27 22:48:32] 2025-07-28 02:48:02,293 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:48:32] 2025-07-28 02:48:02,294 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:48:32] 2025-07-28 02:48:02,294 | INFO     | update_server=False
[2025-07-27 22:48:32] 2025-07-28 02:48:02,294 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:48:32] 2025-07-28 02:48:02,294 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:48:32] 2025-07-28 02:48:02,506 | INFO     | all payload control threads have been joined
[2025-07-27 22:48:32] 2025-07-28 02:48:02,542 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 22:48:32] 2025-07-28 02:48:02,543 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 22:48:32] 2025-07-28 02:48:02,543 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:48:32] 2025-07-28 02:48:02,543 | INFO     | will abort loop
[2025-07-27 22:48:32] 2025-07-28 02:48:02,644 | INFO     | all data control threads have been joined
[2025-07-27 22:48:32] 2025-07-28 02:48:02,929 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:48:32] 2025-07-28 02:48:03,297 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:03,300 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:03,315 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:03,398 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:03,511 | INFO     | [payload] control thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:03,548 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:03,575 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:03,639 | INFO     | all job control threads have been joined
[2025-07-27 22:48:32] 2025-07-28 02:48:03,649 | INFO     | [data] control thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:03,940 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:04,198 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:48:32] 2025-07-28 02:48:04,347 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:04,392 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:04,509 | INFO     | [job] validate thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:04,645 | INFO     | [job] control thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:04,735 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:04,935 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:08,204 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:48:32] 2025-07-28 02:48:09,366 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139804648843072)>', '<ExcThread(monitor, started 139804430141184)>']
[2025-07-27 22:48:32] 2025-07-28 02:48:14,391 | INFO     | all workflow threads have been joined
[2025-07-27 22:48:32] 2025-07-28 02:48:14,391 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:48:32] 2025-07-28 02:48:14,392 | INFO     | traces error code: 0
[2025-07-27 22:48:32] 2025-07-28 02:48:14,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:48:32] 2025-07-28 02:48:31,819 | INFO     | PID=28210 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 22:48:32] 2025-07-28 02:48:31,819 | INFO     | .. there are 2 such processes running
[2025-07-27 22:48:32] 2025-07-28 02:48:31,819 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:48:32] 2025-07-28 02:48:31,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:48:32] 2025-07-28 02:48:31,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:48:32] 2025-07-28 02:48:31,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:48:32] 2025-07-28 02:48:31,820 | INFO     | [monitor] control thread has ended
[2025-07-27 22:48:32] 2025-07-28 02:48:31,887 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:48:32] 2025-07-28 02:48:31,890 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:48:32] 2025-07-28 02:48:31,892 [wrapper] pilotpid: 28210
[2025-07-27 22:48:32] 2025-07-28 02:48:31,894 [wrapper] Pilot exit status: 0
[2025-07-27 22:48:32] 2025-07-28 02:48:31,905 [wrapper] pandaids: 6745061835
[2025-07-27 22:48:32] 2025-07-28 02:48:31,938 [wrapper] cleanup supervisor_pilot 13350 28211
[2025-07-27 22:48:32] 2025-07-28 02:48:31,941 [wrapper] Test setup, not cleaning
[2025-07-27 22:48:32] 2025-07-28 02:48:31,945 [wrapper] apfmon messages muted
[2025-07-27 22:48:32] 2025-07-28 02:48:31,948 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:48:32] 2025-07-28 02:48:31,951 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:48:32]  *** Error codes and diagnostics ***
[2025-07-27 22:48:32]     "exeErrorCode": 0,
[2025-07-27 22:48:32]     "exeErrorDiag": "",
[2025-07-27 22:48:32]     "pilotErrorCode": 0,
[2025-07-27 22:48:32]     "pilotErrorDiag": "",
[2025-07-27 22:48:32]  *** Listing of results directory ***
[2025-07-27 22:48:32] total 436296
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas    530466 Jul 25 16:16 pilot3.tar.gz
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas      5112 Jul 25 16:38 queuedata.json
[2025-07-27 22:48:32] -rwx------ 1 boincer umatlas     36292 Jul 25 16:38 runpilot2-wrapper.sh
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas       100 Jul 27 21:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:48:32] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 21:44 run_atlas
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas       105 Jul 27 21:44 job.xml
[2025-07-27 22:48:32] -rw-r--r-- 2 boincer umatlas 228886895 Jul 27 21:44 EVNT.45743347._001488.pool.root.1
[2025-07-27 22:48:32] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 21:44 start_atlas.sh
[2025-07-27 22:48:32] drwxrwx--x 2 boincer umatlas      4096 Jul 27 21:44 shared
[2025-07-27 22:48:32] -rw-r--r-- 2 boincer umatlas    542881 Jul 27 21:44 input.tar.gz
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas         0 Jul 27 21:44 boinc_lockfile
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas      2560 Jul 27 21:44 pandaJob.out
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas    980125 Jul 27 21:44 agis_schedconf.cvmfs.json
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas   1593052 Jul 27 21:44 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:48:32] drwx------ 4 boincer umatlas      4096 Jul 27 21:44 pilot3
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas      6050 Jul 27 22:45 init_data.xml
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas       529 Jul 27 22:47 boinc_task_state.xml
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas 212651991 Jul 27 22:47 HITS.45743349._026826.pool.root.1
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas      1046 Jul 27 22:47 memory_monitor_summary.json
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas    282837 Jul 27 22:47 log.45743349._026826.job.log.tgz.1
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas        95 Jul 27 22:47 pilot_heartbeat.json
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 22:47 boinc_mmap_file
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas        27 Jul 27 22:47 wrapper_checkpoint.txt
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas      7835 Jul 27 22:48 heartbeat.json
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas       820 Jul 27 22:48 pilotlog.txt
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas    391044 Jul 27 22:48 log.45743349._026826.job.log.1
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas       357 Jul 27 22:48 output.list
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas       620 Jul 27 22:48 runtime_log
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas    696320 Jul 27 22:48 result.tar.gz
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas       657 Jul 27 22:48 ZbKKDmkMez7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4OQLDmjpvrtn.diag
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas      8660 Jul 27 22:48 runtime_log.err
[2025-07-27 22:48:32] -rw-r--r-- 1 boincer umatlas     21932 Jul 27 22:48 stderr.txt
[2025-07-27 22:48:32] HITS file was successfully produced:
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas 212651991 Jul 27 22:47 shared/HITS.pool.root.1
[2025-07-27 22:48:32]  *** Contents of shared directory: ***
[2025-07-27 22:48:32] total 432428
[2025-07-27 22:48:32] -rw-r--r-- 2 boincer umatlas 228886895 Jul 27 21:44 ATLAS.root_0
[2025-07-27 22:48:32] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 21:44 start_atlas.sh
[2025-07-27 22:48:32] -rw-r--r-- 2 boincer umatlas    542881 Jul 27 21:44 input.tar.gz
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas 212651991 Jul 27 22:47 HITS.pool.root.1
[2025-07-27 22:48:32] -rw------- 1 boincer umatlas    696320 Jul 27 22:48 result.tar.gz
22:48:33 (24620): run_atlas exited; CPU time 27860.186701
22:48:33 (24620): called boinc_finish(0)

</stderr_txt>
]]>

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