Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:28:51 (3918627): wrapper (7.7.26015): starting
23:28:51 (3918627): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 23:28:51] Arguments: --nthreads 12
[2025-07-27 23:28:51] Threads: 12
[2025-07-27 23:28:51] Checking for CVMFS
[2025-07-27 23:28:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:28:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:28:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:28:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:28:52] 2.12.6.0 978114 19264 334936 148834 1 376 32630312 40960001 10269 16776704 0 39241600 99.747 51074270 30349 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 23:28:52] CVMFS is ok
[2025-07-27 23:28:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:28:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:28:52] Further information can be found at the LHC@home message board.
[2025-07-27 23:28:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:28:52] Checking for apptainer binary...
[2025-07-27 23:28:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:28:52] Running /usr/bin/apptainer --version
[2025-07-27 23:28:52] apptainer version 1.4.1-1.el9
[2025-07-27 23:28:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:28:52] c6-8-12-2.aglt2.org
[2025-07-27 23:28:52] apptainer works
[2025-07-27 23:28:52] Set ATHENA_PROC_NUMBER=12
[2025-07-27 23:28:52] Set ATHENA_CORE_NUMBER=12
[2025-07-27 23:28:52] Starting ATLAS job with PandaID=6745060622
[2025-07-27 23:28:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:00:01]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:00:01]  mtime=0
[2025-07-28 01:00:01]  protocol_id=None
[2025-07-28 01:00:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 01:00:01]  replicas=None
[2025-07-28 01:00:01]  scope=mc23_13p6TeV
[2025-07-28 01:00:01]  status=None
[2025-07-28 01:00:01]  status_code=0
[2025-07-28 01:00:01]  storage_token=
[2025-07-28 01:00:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745060622/log.45743349._025804.job.log.tgz.1
[2025-07-28 01:00:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a2/12/log.45743349._025804.job.log.tgz.1
[2025-07-28 01:00:01]  workdir=None
[2025-07-28 01:00:01] ]
[2025-07-28 01:00:01] 2025-07-28 04:59:19,525 | INFO     | transferring file log.45743349._025804.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745060622/log.45743349._025804.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 01:00:01] 2025-07-28 04:59:19,526 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745060622/log.45743349._025804.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._025804.job
[2025-07-28 01:00:01] 2025-07-28 04:59:19,546 | INFO     | adding to output.list: log.45743349._025804.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a2/12/log.45743349._025804.job.log.tg
[2025-07-28 01:00:01] 2025-07-28 04:59:19,548 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 01:00:01] 2025-07-28 04:59:19,548 | INFO     | summary of transferred files:
[2025-07-28 01:00:01] 2025-07-28 04:59:19,548 | INFO     |  -- lfn=log.45743349._025804.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 01:00:01] 2025-07-28 04:59:19,548 | INFO     | stage-out finished correctly
[2025-07-28 01:00:01] 2025-07-28 04:59:21,721 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 01:00:01] 2025-07-28 04:59:21,802 | INFO     | job 6745060622 has state=finished
[2025-07-28 01:00:01] 2025-07-28 04:59:21,802 | INFO     | preparing for final server update for job 6745060622 in state='finished'
[2025-07-28 01:00:01] 2025-07-28 04:59:21,802 | INFO     | this job has now completed (state=finished)
[2025-07-28 01:00:01] 2025-07-28 04:59:21,803 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 01:00:01] 2025-07-28 04:59:21,803 | INFO     | log transfer has been attempted: DONE
[2025-07-28 01:00:01] 2025-07-28 04:59:21,803 | INFO     | job 6745060622 has finished - writing final server update
[2025-07-28 01:00:01] 2025-07-28 04:59:21,803 | INFO     | total number of processed events: 400 (read)
[2025-07-28 01:00:01] 2025-07-28 04:59:21,804 | INFO     | executing command: lscpu
[2025-07-28 01:00:01] 2025-07-28 04:59:21,876 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 01:00:01] 2025-07-28 04:59:22,099 | WARNING  | process 3929971 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 01:00:01] 2025-07-28 04:59:22,099 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745060622/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:00:01] 2025-07-28 04:59:22,332 | INFO     | number of running child processes to parent process 3929971: 1
[2025-07-28 01:00:01] 2025-07-28 04:59:22,332 | INFO     | maximum number of monitored processes: 6
[2025-07-28 01:00:01] 2025-07-28 04:59:24,836 | INFO     | monitor loop #385: job 0:6745060622 is in state 'finished'
[2025-07-28 01:00:01] 2025-07-28 04:59:24,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:00:01] 2025-07-28 04:59:27,340 | INFO     | monitor loop #386: job 0:6745060622 is in state 'finished'
[2025-07-28 01:00:01] 2025-07-28 04:59:27,341 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:00:01] 2025-07-28 04:59:27,825 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 01:00:01] 2025-07-28 04:59:27,847 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2672.629392857143
[2025-07-28 01:00:01] 2025-07-28 04:59:27,857 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745060622/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:00:01] 2025-07-28 04:59:27,858 | INFO     | extracted standard info from prmon json
[2025-07-28 01:00:01] 2025-07-28 04:59:27,859 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:00:01] 2025-07-28 04:59:27,859 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:00:01] 2025-07-28 04:59:27,861 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:00:01] 2025-07-28 04:59:27,861 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:00:01] 2025-07-28 04:59:27,864 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:00:01] 2025-07-28 04:59:27,864 | INFO     | sum of square deviations: 170954180.39024365
[2025-07-28 01:00:01] 2025-07-28 04:59:27,865 | INFO     | sum of deviations: -19136689283.4878
[2025-07-28 01:00:01] 2025-07-28 04:59:27,865 | INFO     | mean x: 1753676152.5365853
[2025-07-28 01:00:01] 2025-07-28 04:59:27,865 | INFO     | mean y: 2548140.3292682925
[2025-07-28 01:00:01] 2025-07-28 04:59:27,865 | INFO     | -- intersect: 196309860183.51712
[2025-07-28 01:00:01] 2025-07-28 04:59:27,865 | INFO     | intersect: 196309860183.51712
[2025-07-28 01:00:01] 2025-07-28 04:59:27,865 | INFO     | chi2: 0.17684264512779627
[2025-07-28 01:00:01] 2025-07-28 04:59:27,866 | INFO     | -- intersect: 196309860183.51712
[2025-07-28 01:00:01] 2025-07-28 04:59:27,866 | INFO     | current memory leak: -111.94 B/s (using 82 data points, chi2=0.18)
[2025-07-28 01:00:01] 2025-07-28 04:59:27,866 | INFO     | could have reported an average CPU frequency of 2783 MHz (6 samples)
[2025-07-28 01:00:01] 2025-07-28 04:59:27,867 | INFO     | ..............................
[2025-07-28 01:00:01] 2025-07-28 04:59:27,867 | INFO     | . Timing measurements:
[2025-07-28 01:00:01] 2025-07-28 04:59:27,867 | INFO     | . get job = 0 s
[2025-07-28 01:00:01] 2025-07-28 04:59:27,867 | INFO     | . initial setup = 2 s
[2025-07-28 01:00:01] 2025-07-28 04:59:27,867 | INFO     | . payload setup = 8 s
[2025-07-28 01:00:01] 2025-07-28 04:59:27,867 | INFO     | . stage-in = 0 s
[2025-07-28 01:00:01] 2025-07-28 04:59:27,867 | INFO     | . payload execution = 5383 s
[2025-07-28 01:00:01] 2025-07-28 04:59:27,867 | INFO     | . stage-out = 1 s
[2025-07-28 01:00:01] 2025-07-28 04:59:27,867 | INFO     | . log creation = 0 s
[2025-07-28 01:00:01] 2025-07-28 04:59:27,867 | INFO     | ..............................
[2025-07-28 01:00:01] 2025-07-28 04:59:28,455 | INFO     | 
[2025-07-28 01:00:01] 2025-07-28 04:59:28,456 | INFO     | job summary report
[2025-07-28 01:00:01] 2025-07-28 04:59:28,456 | INFO     | --------------------------------------------------
[2025-07-28 01:00:01] 2025-07-28 04:59:28,456 | INFO     | PanDA job id: 6745060622
[2025-07-28 01:00:01] 2025-07-28 04:59:28,456 | INFO     | task id: 45743349
[2025-07-28 01:00:01] 2025-07-28 04:59:28,456 | INFO     | errors: (none)
[2025-07-28 01:00:01] 2025-07-28 04:59:28,456 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:00:01] 2025-07-28 04:59:28,456 | INFO     | pilot state: finished 
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | transexitcode: 0
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | exeerrorcode: 0
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | exeerrordiag: 
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | exitcode: 0
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | exitmsg: OK
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | cpuconsumptiontime: 49226 s
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | nevents: 400
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | neventsw: 0
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | pid: 3929971
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | pgrp: 3929971
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | corecount: 12
[2025-07-28 01:00:01] 2025-07-28 04:59:28,457 | INFO     | event service: False
[2025-07-28 01:00:01] 2025-07-28 04:59:28,458 | INFO     | sizes: {0: 2397304, 1: 2397503, 6: 2397765, 11: 2397793, 5395: 2424275, 5397: 2433273, 5399: 2433457, 5405: 2433651}
[2025-07-28 01:00:01] 2025-07-28 04:59:28,458 | INFO     | --------------------------------------------------
[2025-07-28 01:00:01] 2025-07-28 04:59:28,458 | INFO     | 
[2025-07-28 01:00:01] 2025-07-28 04:59:28,458 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 01:00:01] 2025-07-28 04:59:28,486 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,487 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,487 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,487 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,487 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,487 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,487 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,488 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,488 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,488 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,488 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,488 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,488 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,488 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,488 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,488 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:00:01] 2025-07-28 04:59:28,489 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,489 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:00:01] 2025-07-28 04:59:28,489 | INFO     | job 6745060622 has completed (purged errors)
[2025-07-28 01:00:01] 2025-07-28 04:59:28,489 | INFO     | overall cleanup function is called
[2025-07-28 01:00:01] 2025-07-28 04:59:29,498 | INFO     | --- collectZombieJob: --- 10, [3929971]
[2025-07-28 01:00:01] 2025-07-28 04:59:29,500 | INFO     | zombie collector waiting for pid 3929971
[2025-07-28 01:00:01] 2025-07-28 04:59:29,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:00:01] 2025-07-28 04:59:29,500 | INFO     | collected zombie processes
[2025-07-28 01:00:01] 2025-07-28 04:59:29,500 | INFO     | will attempt to kill all subprocesses of pid=3929971
[2025-07-28 01:00:01] 2025-07-28 04:59:29,879 | INFO     | process IDs to be killed: [3929971] (in reverse order)
[2025-07-28 01:00:01] 2025-07-28 04:59:30,007 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:00:01] 2025-07-28 04:59:30,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:00:01] 2025-07-28 04:59:30,020 | INFO     | did not find any defunct processes belonging to 3929971
[2025-07-28 01:00:01] 2025-07-28 04:59:30,031 | INFO     | did not find any defunct processes belonging to 3929971
[2025-07-28 01:00:01] 2025-07-28 04:59:30,032 | INFO     | ready for new job
[2025-07-28 01:00:01] 2025-07-28 04:59:30,032 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:00:01] 2025-07-28 04:59:30,034 | INFO     | ***************************************
[2025-07-28 01:00:01] 2025-07-28 04:59:30,035 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:00:01] 2025-07-28 04:59:30,035 | INFO     | ***************************************
[2025-07-28 01:00:01] 2025-07-28 04:59:30,035 | INFO     | 
[2025-07-28 01:00:01] 2025-07-28 04:59:30,038 | INFO     | architecture information:
[2025-07-28 01:00:01] 2025-07-28 04:59:30,040 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:00:01] 2025-07-28 04:59:30,061 | INFO     | cat /etc/os-release:
[2025-07-28 01:00:01] NAME="CentOS Linux"
[2025-07-28 01:00:01] VERSION="7 (Core)"
[2025-07-28 01:00:01] ID="centos"
[2025-07-28 01:00:01] ID_LIKE="rhel fedora"
[2025-07-28 01:00:01] VERSION_ID="7"
[2025-07-28 01:00:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:00:01] ANSI_COLOR="0;31"
[2025-07-28 01:00:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:00:01] HOME_URL="https://www.centos.org/"
[2025-07-28 01:00:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:00:01] 
[2025-07-28 01:00:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:00:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:00:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:00:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:00:01] 
[2025-07-28 01:00:01] 2025-07-28 04:59:30,061 | INFO     | ***************************************
[2025-07-28 01:00:01] 2025-07-28 04:59:30,566 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 01:00:01] 2025-07-28 04:59:30,587 | INFO     | sufficient remaining disk space (56305385472 B)
[2025-07-28 01:00:01] 2025-07-28 04:59:30,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:00:01] 2025-07-28 04:59:30,588 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:00:01] 2025-07-28 04:59:30,588 | INFO     | update_server=False
[2025-07-28 01:00:01] 2025-07-28 04:59:30,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:00:01] 2025-07-28 04:59:30,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:00:01] 2025-07-28 04:59:30,696 | INFO     | all data control threads have been joined
[2025-07-28 01:00:01] 2025-07-28 04:59:30,851 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:00:01] 2025-07-28 04:59:30,852 | INFO     | aborting loop
[2025-07-28 01:00:01] 2025-07-28 04:59:31,183 | INFO     | all payload control threads have been joined
[2025-07-28 01:00:01] 2025-07-28 04:59:31,508 | INFO     | all job control threads have been joined
[2025-07-28 01:00:01] 2025-07-28 04:59:31,593 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:31,702 | INFO     | [data] control thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:31,728 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:31,857 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,188 | INFO     | [payload] control thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,203 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,230 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:00:01] 2025-07-28 04:59:32,395 | INFO     | [job] validate thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,400 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,514 | INFO     | [job] control thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,570 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,595 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,607 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,704 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:32,994 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:00:01] 2025-07-28 04:59:34,000 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:36,321 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:00:01] 2025-07-28 04:59:37,002 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140060954236736)>', '<ExcThread(monitor, started 140059957262080)>']
[2025-07-28 01:00:01] 2025-07-28 04:59:42,026 | INFO     | all workflow threads have been joined
[2025-07-28 01:00:01] 2025-07-28 04:59:42,027 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:00:01] 2025-07-28 04:59:42,027 | INFO     | traces error code: 0
[2025-07-28 01:00:01] 2025-07-28 04:59:42,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:00:01] 2025-07-28 05:00:01,082 | INFO     | PID=3923023 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:00:01] 2025-07-28 05:00:01,082 | INFO     | .. there are 12 such processes running
[2025-07-28 01:00:01] 2025-07-28 05:00:01,083 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:00:01] 2025-07-28 05:00:01,083 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:00:01] 2025-07-28 05:00:01,083 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:00:01] 2025-07-28 05:00:01,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:00:01] 2025-07-28 05:00:01,084 | INFO     | [monitor] control thread has ended
[2025-07-28 01:00:01] 2025-07-28 05:00:01,270 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:00:01] 2025-07-28 05:00:01,275 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:00:01] 2025-07-28 05:00:01,279 [wrapper] pilotpid: 3923023
[2025-07-28 01:00:01] 2025-07-28 05:00:01,283 [wrapper] Pilot exit status: 0
[2025-07-28 01:00:01] 2025-07-28 05:00:01,299 [wrapper] pandaids: 6745060622
[2025-07-28 01:00:01] 2025-07-28 05:00:01,378 [wrapper] cleanup supervisor_pilot 4175858 3923024
[2025-07-28 01:00:01] 2025-07-28 05:00:01,386 [wrapper] Test setup, not cleaning
[2025-07-28 01:00:01] 2025-07-28 05:00:01,390 [wrapper] apfmon messages muted
[2025-07-28 01:00:01] 2025-07-28 05:00:01,395 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:00:01] 2025-07-28 05:00:01,398 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:00:01]  *** Error codes and diagnostics ***
[2025-07-28 01:00:01]     "exeErrorCode": 0,
[2025-07-28 01:00:01]     "exeErrorDiag": "",
[2025-07-28 01:00:01]     "pilotErrorCode": 0,
[2025-07-28 01:00:01]     "pilotErrorDiag": "",
[2025-07-28 01:00:01]  *** Listing of results directory ***
[2025-07-28 01:00:01] total 435008
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 15:14 queuedata.json
[2025-07-28 01:00:01] -rwx------. 1 boincer umatlas     36292 Jul 25 15:15 runpilot2-wrapper.sh
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:00:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:28 run_atlas
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:28 job.xml
[2025-07-28 01:00:01] -rw-r--r--. 2 boincer umatlas 227926994 Jul 27 23:28 EVNT.45743347._001447.pool.root.1
[2025-07-28 01:00:01] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:28 start_atlas.sh
[2025-07-28 01:00:01] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:28 shared
[2025-07-28 01:00:01] -rw-r--r--. 2 boincer umatlas    564558 Jul 27 23:28 input.tar.gz
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:28 boinc_lockfile
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 23:28 pandaJob.out
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas    980117 Jul 27 23:29 agis_schedconf.cvmfs.json
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:29 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:00:01] drwx------. 6 boincer umatlas      4096 Jul 27 23:29 pilot3
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas      6842 Jul 28 00:57 init_data.xml
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas 211842463 Jul 28 00:58 HITS.45743349._025804.pool.root.1
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas       530 Jul 28 00:58 boinc_task_state.xml
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas      1037 Jul 28 00:59 memory_monitor_summary.json
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas    361497 Jul 28 00:59 log.45743349._025804.job.log.tgz.1
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas      7826 Jul 28 00:59 heartbeat.json
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 00:59 boinc_mmap_file
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas        27 Jul 28 00:59 wrapper_checkpoint.txt
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas        95 Jul 28 01:00 pilot_heartbeat.json
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas       823 Jul 28 01:00 pilotlog.txt
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas    521782 Jul 28 01:00 log.45743349._025804.job.log.1
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas       357 Jul 28 01:00 output.list
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas       620 Jul 28 01:00 runtime_log
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas    901120 Jul 28 01:00 result.tar.gz
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 01:00 runtime_log.err
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas       654 Jul 28 01:00 8inNDmh4cz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmbSzKDmCBST0m.diag
[2025-07-28 01:00:01] -rw-r--r--. 1 boincer umatlas     21800 Jul 28 01:00 stderr.txt
[2025-07-28 01:00:01] HITS file was successfully produced:
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas 211842463 Jul 28 00:58 shared/HITS.pool.root.1
[2025-07-28 01:00:01]  *** Contents of shared directory: ***
[2025-07-28 01:00:01] total 430916
[2025-07-28 01:00:01] -rw-r--r--. 2 boincer umatlas 227926994 Jul 27 23:28 ATLAS.root_0
[2025-07-28 01:00:01] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:28 start_atlas.sh
[2025-07-28 01:00:01] -rw-r--r--. 2 boincer umatlas    564558 Jul 27 23:28 input.tar.gz
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas 211842463 Jul 28 00:58 HITS.pool.root.1
[2025-07-28 01:00:01] -rw-------. 1 boincer umatlas    901120 Jul 28 01:00 result.tar.gz
01:00:02 (3918627): run_atlas exited; CPU time 49285.132231
01:00:02 (3918627): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN