Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:51:43 (675762): wrapper (7.7.26015): starting
22:51:43 (675762): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 22:51:43] Arguments: --nthreads 12
[2025-07-27 22:51:43] Threads: 12
[2025-07-27 22:51:43] Checking for CVMFS
[2025-07-27 22:51:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:51:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:51:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:51:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:51:43] 2.12.6.0 2624825 19227 344852 148832 2 572 36877817 40960001 7079 16776704 0 58913494 99.779 53660455 31189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 22:51:43] CVMFS is ok
[2025-07-27 22:51:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:51:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:51:43] Further information can be found at the LHC@home message board.
[2025-07-27 22:51:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:51:43] Checking for apptainer binary...
[2025-07-27 22:51:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:51:43] Running /usr/bin/apptainer --version
[2025-07-27 22:51:43] apptainer version 1.4.1-1.el9
[2025-07-27 22:51:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:51:43] c6-8-12-1.aglt2.org
[2025-07-27 22:51:43] apptainer works
[2025-07-27 22:51:43] Set ATHENA_PROC_NUMBER=12
[2025-07-27 22:51:43] Set ATHENA_CORE_NUMBER=12
[2025-07-27 22:51:43] Starting ATLAS job with PandaID=6747699741
[2025-07-27 22:51:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:02:18]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:02:18]  is_tar=False
[2025-07-28 00:02:18]  lfn=log.45743349._055138.job.log.tgz.1
[2025-07-28 00:02:18]  mtime=0
[2025-07-28 00:02:18]  protocol_id=None
[2025-07-28 00:02:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 00:02:18]  replicas=None
[2025-07-28 00:02:18]  scope=mc23_13p6TeV
[2025-07-28 00:02:18]  status=None
[2025-07-28 00:02:18]  status_code=0
[2025-07-28 00:02:18]  storage_token=
[2025-07-28 00:02:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747699741/log.45743349._055138.job.log.tgz.1
[2025-07-28 00:02:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/71/log.45743349._055138.job.log.tgz.1
[2025-07-28 00:02:18]  workdir=None
[2025-07-28 00:02:18] ]
[2025-07-28 00:02:18] 2025-07-28 04:01:37,406 | INFO     | transferring file log.45743349._055138.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747699741/log.45743349._055138.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 00:02:18] 2025-07-28 04:01:37,406 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747699741/log.45743349._055138.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._055138.job
[2025-07-28 00:02:18] 2025-07-28 04:01:37,428 | INFO     | adding to output.list: log.45743349._055138.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/71/log.45743349._055138.job.log.tg
[2025-07-28 00:02:18] 2025-07-28 04:01:37,429 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:02:18] 2025-07-28 04:01:37,430 | INFO     | summary of transferred files:
[2025-07-28 00:02:18] 2025-07-28 04:01:37,430 | INFO     |  -- lfn=log.45743349._055138.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:02:18] 2025-07-28 04:01:37,430 | INFO     | stage-out finished correctly
[2025-07-28 00:02:18] 2025-07-28 04:01:39,032 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:02:18] 2025-07-28 04:01:39,577 | INFO     | monitor loop #313: job 0:6747699741 is in state 'finished'
[2025-07-28 00:02:18] 2025-07-28 04:01:39,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:02:18] 2025-07-28 04:01:41,807 | INFO     | job 6747699741 has state=finished
[2025-07-28 00:02:18] 2025-07-28 04:01:41,807 | INFO     | preparing for final server update for job 6747699741 in state='finished'
[2025-07-28 00:02:18] 2025-07-28 04:01:41,808 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:02:18] 2025-07-28 04:01:41,808 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:02:18] 2025-07-28 04:01:41,808 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:02:18] 2025-07-28 04:01:41,808 | INFO     | job 6747699741 has finished - writing final server update
[2025-07-28 00:02:18] 2025-07-28 04:01:41,809 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:02:18] 2025-07-28 04:01:41,809 | INFO     | executing command: lscpu
[2025-07-28 00:02:18] 2025-07-28 04:01:41,867 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:02:18] 2025-07-28 04:01:42,080 | INFO     | monitor loop #314: job 0:6747699741 is in state 'finished'
[2025-07-28 00:02:18] 2025-07-28 04:01:42,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:02:18] 2025-07-28 04:01:44,584 | INFO     | monitor loop #315: job 0:6747699741 is in state 'finished'
[2025-07-28 00:02:18] 2025-07-28 04:01:44,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:02:18] 2025-07-28 04:01:46,426 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 00:02:18] 2025-07-28 04:01:46,436 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2862.108785714286
[2025-07-28 00:02:18] 2025-07-28 04:01:46,449 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747699741/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:02:18] 2025-07-28 04:01:46,450 | INFO     | extracted standard info from prmon json
[2025-07-28 00:02:18] 2025-07-28 04:01:46,450 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:02:18] 2025-07-28 04:01:46,450 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:02:18] 2025-07-28 04:01:46,451 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:02:18] 2025-07-28 04:01:46,451 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:02:18] 2025-07-28 04:01:46,453 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:02:18] 2025-07-28 04:01:46,454 | INFO     | sum of square deviations: 73882315.5
[2025-07-28 00:02:18] 2025-07-28 04:01:46,454 | INFO     | sum of deviations: -8115626263.499999
[2025-07-28 00:02:18] 2025-07-28 04:01:46,454 | INFO     | mean x: 1753673301.5
[2025-07-28 00:02:18] 2025-07-28 04:01:46,455 | INFO     | mean y: 2487311.9516129033
[2025-07-28 00:02:18] 2025-07-28 04:01:46,455 | INFO     | -- intersect: 192635284577.9246
[2025-07-28 00:02:18] 2025-07-28 04:01:46,455 | INFO     | intersect: 192635284577.9246
[2025-07-28 00:02:18] 2025-07-28 04:01:46,455 | INFO     | chi2: 0.12188107573064677
[2025-07-28 00:02:18] 2025-07-28 04:01:46,455 | INFO     | -- intersect: 192635284577.9246
[2025-07-28 00:02:18] 2025-07-28 04:01:46,455 | INFO     | current memory leak: -109.85 B/s (using 62 data points, chi2=0.12)
[2025-07-28 00:02:18] 2025-07-28 04:01:46,456 | INFO     | could have reported an average CPU frequency of 2999 MHz (6 samples)
[2025-07-28 00:02:18] 2025-07-28 04:01:46,456 | INFO     | ..............................
[2025-07-28 00:02:18] 2025-07-28 04:01:46,456 | INFO     | . Timing measurements:
[2025-07-28 00:02:18] 2025-07-28 04:01:46,456 | INFO     | . get job = 0 s
[2025-07-28 00:02:18] 2025-07-28 04:01:46,456 | INFO     | . initial setup = 2 s
[2025-07-28 00:02:18] 2025-07-28 04:01:46,457 | INFO     | . payload setup = 5 s
[2025-07-28 00:02:18] 2025-07-28 04:01:46,457 | INFO     | . stage-in = 0 s
[2025-07-28 00:02:18] 2025-07-28 04:01:46,457 | INFO     | . payload execution = 4159 s
[2025-07-28 00:02:18] 2025-07-28 04:01:46,457 | INFO     | . stage-out = 0 s
[2025-07-28 00:02:18] 2025-07-28 04:01:46,457 | INFO     | . log creation = 0 s
[2025-07-28 00:02:18] 2025-07-28 04:01:46,457 | INFO     | ..............................
[2025-07-28 00:02:18] 2025-07-28 04:01:46,579 | INFO     | 
[2025-07-28 00:02:18] 2025-07-28 04:01:46,579 | INFO     | job summary report
[2025-07-28 00:02:18] 2025-07-28 04:01:46,580 | INFO     | --------------------------------------------------
[2025-07-28 00:02:18] 2025-07-28 04:01:46,580 | INFO     | PanDA job id: 6747699741
[2025-07-28 00:02:18] 2025-07-28 04:01:46,580 | INFO     | task id: 45743349
[2025-07-28 00:02:18] 2025-07-28 04:01:46,580 | INFO     | errors: (none)
[2025-07-28 00:02:18] 2025-07-28 04:01:46,580 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:02:18] 2025-07-28 04:01:46,580 | INFO     | pilot state: finished 
[2025-07-28 00:02:18] 2025-07-28 04:01:46,580 | INFO     | transexitcode: 0
[2025-07-28 00:02:18] 2025-07-28 04:01:46,580 | INFO     | exeerrorcode: 0
[2025-07-28 00:02:18] 2025-07-28 04:01:46,580 | INFO     | exeerrordiag: 
[2025-07-28 00:02:18] 2025-07-28 04:01:46,581 | INFO     | exitcode: 0
[2025-07-28 00:02:18] 2025-07-28 04:01:46,581 | INFO     | exitmsg: OK
[2025-07-28 00:02:18] 2025-07-28 04:01:46,581 | INFO     | cpuconsumptiontime: 44126 s
[2025-07-28 00:02:18] 2025-07-28 04:01:46,581 | INFO     | nevents: 400
[2025-07-28 00:02:18] 2025-07-28 04:01:46,581 | INFO     | neventsw: 0
[2025-07-28 00:02:18] 2025-07-28 04:01:46,581 | INFO     | pid: 687279
[2025-07-28 00:02:18] 2025-07-28 04:01:46,581 | INFO     | pgrp: 687279
[2025-07-28 00:02:18] 2025-07-28 04:01:46,581 | INFO     | corecount: 12
[2025-07-28 00:02:18] 2025-07-28 04:01:46,581 | INFO     | event service: False
[2025-07-28 00:02:18] 2025-07-28 04:01:46,581 | INFO     | sizes: {0: 2397425, 3: 2397687, 11: 2397715, 4168: 2423697, 4171: 2432695, 4172: 2432751, 4180: 2433073}
[2025-07-28 00:02:18] 2025-07-28 04:01:46,582 | INFO     | --------------------------------------------------
[2025-07-28 00:02:18] 2025-07-28 04:01:46,582 | INFO     | 
[2025-07-28 00:02:18] 2025-07-28 04:01:46,582 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 00:02:18] 2025-07-28 04:01:46,603 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,604 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,604 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,604 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,604 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,604 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,604 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,604 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,605 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,605 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,605 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,605 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,605 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,605 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,605 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,605 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,605 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,606 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:02:18] 2025-07-28 04:01:46,606 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,606 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:02:18] 2025-07-28 04:01:46,606 | INFO     | job 6747699741 has completed (purged errors)
[2025-07-28 00:02:18] 2025-07-28 04:01:46,606 | INFO     | overall cleanup function is called
[2025-07-28 00:02:18] 2025-07-28 04:01:47,614 | INFO     | --- collectZombieJob: --- 10, [687279]
[2025-07-28 00:02:18] 2025-07-28 04:01:47,615 | INFO     | zombie collector waiting for pid 687279
[2025-07-28 00:02:18] 2025-07-28 04:01:47,615 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:02:18] 2025-07-28 04:01:47,615 | INFO     | collected zombie processes
[2025-07-28 00:02:18] 2025-07-28 04:01:47,615 | INFO     | will attempt to kill all subprocesses of pid=687279
[2025-07-28 00:02:18] 2025-07-28 04:01:47,926 | INFO     | process IDs to be killed: [687279] (in reverse order)
[2025-07-28 00:02:18] 2025-07-28 04:01:48,004 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:02:18] 2025-07-28 04:01:48,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:02:18] 2025-07-28 04:01:48,016 | INFO     | did not find any defunct processes belonging to 687279
[2025-07-28 00:02:18] 2025-07-28 04:01:48,028 | INFO     | did not find any defunct processes belonging to 687279
[2025-07-28 00:02:18] 2025-07-28 04:01:48,029 | INFO     | ready for new job
[2025-07-28 00:02:18] 2025-07-28 04:01:48,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:02:18] 2025-07-28 04:01:48,034 | INFO     | ***************************************
[2025-07-28 00:02:18] 2025-07-28 04:01:48,035 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:02:18] 2025-07-28 04:01:48,035 | INFO     | ***************************************
[2025-07-28 00:02:18] 2025-07-28 04:01:48,035 | INFO     | 
[2025-07-28 00:02:18] 2025-07-28 04:01:48,052 | INFO     | architecture information:
[2025-07-28 00:02:18] 2025-07-28 04:01:48,053 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:02:18] 2025-07-28 04:01:48,069 | INFO     | cat /etc/os-release:
[2025-07-28 00:02:18] NAME="CentOS Linux"
[2025-07-28 00:02:18] VERSION="7 (Core)"
[2025-07-28 00:02:18] ID="centos"
[2025-07-28 00:02:18] ID_LIKE="rhel fedora"
[2025-07-28 00:02:18] VERSION_ID="7"
[2025-07-28 00:02:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:02:18] ANSI_COLOR="0;31"
[2025-07-28 00:02:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:02:18] HOME_URL="https://www.centos.org/"
[2025-07-28 00:02:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:02:18] 
[2025-07-28 00:02:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:02:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:02:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:02:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:02:18] 
[2025-07-28 00:02:18] 2025-07-28 04:01:48,069 | INFO     | ***************************************
[2025-07-28 00:02:18] 2025-07-28 04:01:48,572 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 00:02:18] 2025-07-28 04:01:48,591 | INFO     | sufficient remaining disk space (58728644608 B)
[2025-07-28 00:02:18] 2025-07-28 04:01:48,592 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:02:18] 2025-07-28 04:01:48,592 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:02:18] 2025-07-28 04:01:48,592 | INFO     | update_server=False
[2025-07-28 00:02:18] 2025-07-28 04:01:48,592 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:02:18] 2025-07-28 04:01:48,593 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:02:18] 2025-07-28 04:01:48,593 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:02:18] 2025-07-28 04:01:48,593 | INFO     | aborting loop
[2025-07-28 00:02:18] 2025-07-28 04:01:48,808 | INFO     | all data control threads have been joined
[2025-07-28 00:02:18] 2025-07-28 04:01:49,341 | INFO     | all job control threads have been joined
[2025-07-28 00:02:18] 2025-07-28 04:01:49,593 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:02:18] 2025-07-28 04:01:49,598 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:49,599 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:49,814 | INFO     | [data] control thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:49,901 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:49,909 | INFO     | [job] validate thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:49,931 | INFO     | all payload control threads have been joined
[2025-07-28 00:02:18] 2025-07-28 04:01:50,053 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:50,100 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:50,162 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:50,254 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:50,347 | INFO     | [job] control thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:50,599 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:50,884 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:50,885 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:50,937 | INFO     | [payload] control thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:51,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:02:18] 2025-07-28 04:01:52,593 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:53,599 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:02:18] 2025-07-28 04:01:55,662 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140689654458176)>', '<ExcThread(monitor, started 140688867964672)>']
[2025-07-28 00:02:18] 2025-07-28 04:02:00,686 | INFO     | all workflow threads have been joined
[2025-07-28 00:02:18] 2025-07-28 04:02:00,687 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:02:18] 2025-07-28 04:02:00,687 | INFO     | traces error code: 0
[2025-07-28 00:02:18] 2025-07-28 04:02:00,687 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:02:18] 2025-07-28 04:02:18,222 | INFO     | PID=679605 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 00:02:18] 2025-07-28 04:02:18,223 | INFO     | .. there are 10 such processes running
[2025-07-28 00:02:18] 2025-07-28 04:02:18,224 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:02:18] 2025-07-28 04:02:18,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:02:18] 2025-07-28 04:02:18,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:02:18] 2025-07-28 04:02:18,224 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:02:18] 2025-07-28 04:02:18,224 | INFO     | [monitor] control thread has ended
[2025-07-28 00:02:18] 2025-07-28 04:02:18,410 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:02:18] 2025-07-28 04:02:18,413 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:02:18] 2025-07-28 04:02:18,417 [wrapper] pilotpid: 679605
[2025-07-28 00:02:18] 2025-07-28 04:02:18,421 [wrapper] Pilot exit status: 0
[2025-07-28 00:02:18] 2025-07-28 04:02:18,435 [wrapper] pandaids: 6747699741
[2025-07-28 00:02:18] 2025-07-28 04:02:18,517 [wrapper] cleanup supervisor_pilot  828094 679606
[2025-07-28 00:02:18] 2025-07-28 04:02:18,520 [wrapper] Test setup, not cleaning
[2025-07-28 00:02:18] 2025-07-28 04:02:18,524 [wrapper] apfmon messages muted
[2025-07-28 00:02:18] 2025-07-28 04:02:18,528 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:02:18] 2025-07-28 04:02:18,532 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:02:18]  *** Error codes and diagnostics ***
[2025-07-28 00:02:18]     "exeErrorCode": 0,
[2025-07-28 00:02:18]     "exeErrorDiag": "",
[2025-07-28 00:02:18]     "pilotErrorCode": 0,
[2025-07-28 00:02:18]     "pilotErrorDiag": "",
[2025-07-28 00:02:18]  *** Listing of results directory ***
[2025-07-28 00:02:18] total 354584
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 15:51 pilot3.tar.gz
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 16:01 queuedata.json
[2025-07-28 00:02:18] -rwx------. 1 boincer umatlas     36292 Jul 27 16:02 runpilot2-wrapper.sh
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:02:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:51 run_atlas
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:51 job.xml
[2025-07-28 00:02:18] -rw-r--r--. 2 boincer umatlas 148582165 Jul 27 22:51 EVNT.45743347._001735.pool.root.1
[2025-07-28 00:02:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:51 start_atlas.sh
[2025-07-28 00:02:18] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:51 shared
[2025-07-28 00:02:18] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 22:51 input.tar.gz
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:51 boinc_lockfile
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 22:51 pandaJob.out
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas    980125 Jul 27 22:51 agis_schedconf.cvmfs.json
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:51 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:02:18] drwx------. 4 boincer umatlas      4096 Jul 27 22:51 pilot3
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 23:56 init_data.xml
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas       529 Jul 28 00:01 boinc_task_state.xml
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas 209061882 Jul 28 00:01 HITS.45743349._055138.pool.root.1
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas      1033 Jul 28 00:01 memory_monitor_summary.json
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas    360586 Jul 28 00:01 log.45743349._055138.job.log.tgz.1
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas      7821 Jul 28 00:01 heartbeat.json
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 00:02 boinc_mmap_file
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas        27 Jul 28 00:02 wrapper_checkpoint.txt
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas       822 Jul 28 00:02 pilotlog.txt
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas        95 Jul 28 00:02 pilot_heartbeat.json
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas    424072 Jul 28 00:02 log.45743349._055138.job.log.1
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas       357 Jul 28 00:02 output.list
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas       620 Jul 28 00:02 runtime_log
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas    808960 Jul 28 00:02 result.tar.gz
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 00:02 runtime_log.err
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas       653 Jul 28 00:02 1E6MDm1kM07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWKWLDmdmujWn.diag
[2025-07-28 00:02:18] -rw-r--r--. 1 boincer umatlas     21595 Jul 28 00:02 stderr.txt
[2025-07-28 00:02:18] HITS file was successfully produced:
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas 209061882 Jul 28 00:01 shared/HITS.pool.root.1
[2025-07-28 00:02:18]  *** Contents of shared directory: ***
[2025-07-28 00:02:18] total 350608
[2025-07-28 00:02:18] -rw-r--r--. 2 boincer umatlas 148582165 Jul 27 22:51 ATLAS.root_0
[2025-07-28 00:02:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:51 start_atlas.sh
[2025-07-28 00:02:18] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 22:51 input.tar.gz
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas 209061882 Jul 28 00:01 HITS.pool.root.1
[2025-07-28 00:02:18] -rw-------. 1 boincer umatlas    808960 Jul 28 00:02 result.tar.gz
00:02:19 (675762): run_atlas exited; CPU time 44206.126967
00:02:19 (675762): called boinc_finish(0)

</stderr_txt>
]]>

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