Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:45:01 (723232): wrapper (7.7.26015): starting
04:45:01 (723232): wrapper: running run_atlas (--nthreads 6)
[2025-07-29 04:45:01] Arguments: --nthreads 6
[2025-07-29 04:45:01] Threads: 6
[2025-07-29 04:45:01] Checking for CVMFS
[2025-07-29 04:45:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 04:45:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 04:45:01] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 04:45:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 04:45:02] 2.13.1.0 77746 9924 84244 148862 3 9 44261145 52428800 922 130560 0 12693574 99.994 353219 167 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-29 04:45:02] CVMFS is ok
[2025-07-29 04:45:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 04:45:02] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-29 04:45:02] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-29 04:45:02] Further information can be found at the LHC@home message board.
[2025-07-29 04:45:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 04:45:02] Checking for apptainer binary...
[2025-07-29 04:45:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-29 04:45:02] Running /usr/bin/apptainer --version
[2025-07-29 04:45:02] apptainer version 1.4.1-1.el9
[2025-07-29 04:45:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 04:45:02] Atto003
[2025-07-29 04:45:02] apptainer works
[2025-07-29 04:45:02] Set ATHENA_PROC_NUMBER=6
[2025-07-29 04:45:02] Set ATHENA_CORE_NUMBER=6
[2025-07-29 04:45:02] Starting ATLAS job with PandaID=6747678647
[2025-07-29 04:45:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 06:48:59]  *** The last 200 lines of the pilot log: ***
[2025-07-29 06:48:59] 2025-07-28 21:48:26,741 | INFO     | intersect: -91834544836.53024
[2025-07-29 06:48:59] 2025-07-28 21:48:26,742 | INFO     | chi2: 3.5896470215436853
[2025-07-29 06:48:59] 2025-07-28 21:48:26,742 | INFO     | sum of square deviations: 483971865.0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,742 | INFO     | sum of deviations: 27698282017.000008
[2025-07-29 06:48:59] 2025-07-28 21:48:26,742 | INFO     | mean x: 1753735444.5
[2025-07-29 06:48:59] 2025-07-28 21:48:26,743 | INFO     | mean y: 2403890.4655172415
[2025-07-29 06:48:59] 2025-07-28 21:48:26,743 | INFO     | -- intersect: -100365948978.49695
[2025-07-29 06:48:59] 2025-07-28 21:48:26,743 | INFO     | intersect: -100365948978.49695
[2025-07-29 06:48:59] 2025-07-28 21:48:26,743 | INFO     | chi2: 3.5963979389980936
[2025-07-29 06:48:59] 2025-07-28 21:48:26,743 | INFO     | current chi2=3.5963979389980936 (change=-0.188066331143197 %)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,743 | INFO     | right removable region: 115
[2025-07-29 06:48:59] 2025-07-28 21:48:26,743 | INFO     | sum of square deviations: 483971865.0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,744 | INFO     | sum of deviations: 2461183378.4999995
[2025-07-29 06:48:59] 2025-07-28 21:48:26,744 | INFO     | mean x: 1753735749.5
[2025-07-29 06:48:59] 2025-07-28 21:48:26,744 | INFO     | mean y: 2467464.5603448274
[2025-07-29 06:48:59] 2025-07-28 21:48:26,744 | INFO     | -- intersect: -8915954429.552526
[2025-07-29 06:48:59] 2025-07-28 21:48:26,744 | INFO     | intersect: -8915954429.552526
[2025-07-29 06:48:59] 2025-07-28 21:48:26,744 | INFO     | chi2: 1.3289303082142485
[2025-07-29 06:48:59] 2025-07-28 21:48:26,744 | INFO     | current chi2=1.3289303082142485 (change=62.97880264442386 %)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,745 | INFO     | sum of square deviations: 424045160.0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,745 | INFO     | sum of deviations: -16050377706.0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,745 | INFO     | mean x: 1753735902.0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,745 | INFO     | mean y: 2514585.243243243
[2025-07-29 06:48:59] 2025-07-28 21:48:26,745 | INFO     | -- intersect: 66382528505.62993
[2025-07-29 06:48:59] 2025-07-28 21:48:26,745 | INFO     | intersect: 66382528505.62993
[2025-07-29 06:48:59] 2025-07-28 21:48:26,745 | INFO     | chi2: 0.24819036476910727
[2025-07-29 06:48:59] 2025-07-28 21:48:26,746 | INFO     | current chi2=0.24819036476910727 (change=81.32404963337669 %)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,746 | INFO     | sum of square deviations: 369281342.5
[2025-07-29 06:48:59] 2025-07-28 21:48:26,746 | INFO     | sum of deviations: -16609142921.500008
[2025-07-29 06:48:59] 2025-07-28 21:48:26,746 | INFO     | mean x: 1753736054.5
[2025-07-29 06:48:59] 2025-07-28 21:48:26,746 | INFO     | mean y: 2515890.1981132077
[2025-07-29 06:48:59] 2025-07-28 21:48:26,746 | INFO     | -- intersect: 78880188340.6497
[2025-07-29 06:48:59] 2025-07-28 21:48:26,747 | INFO     | intersect: 78880188340.6497
[2025-07-29 06:48:59] 2025-07-28 21:48:26,747 | INFO     | chi2: 0.19226037628395176
[2025-07-29 06:48:59] 2025-07-28 21:48:26,747 | INFO     | current chi2=0.19226037628395176 (change=22.535116758939235 %)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,747 | INFO     | left removable region: 30
[2025-07-29 06:48:59] 2025-07-28 21:48:26,747 | INFO     | sum of square deviations: 190403570.0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,747 | INFO     | sum of deviations: -831703829.0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,747 | INFO     | mean x: 1753736329.0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,748 | INFO     | mean y: 2461928.4823529413
[2025-07-29 06:48:59] 2025-07-28 21:48:26,748 | INFO     | -- intersect: 7662975961.31117
[2025-07-29 06:48:59] 2025-07-28 21:48:26,748 | INFO     | intersect: 7662975961.31117
[2025-07-29 06:48:59] 2025-07-28 21:48:26,748 | INFO     | chi2: 0.026721636931671996
[2025-07-29 06:48:59] 2025-07-28 21:48:26,748 | INFO     | -- intersect: 7662975961.31117
[2025-07-29 06:48:59] 2025-07-28 21:48:26,748 | INFO     | current memory leak: -4.37 B/s (using 85 data points, chi2=0.03)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,748 | INFO     | could have reported an average CPU frequency of 3438 MHz (8 samples)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,749 | INFO     | ..............................
[2025-07-29 06:48:59] 2025-07-28 21:48:26,749 | INFO     | . Timing measurements:
[2025-07-29 06:48:59] 2025-07-28 21:48:26,749 | INFO     | . get job = 0 s
[2025-07-29 06:48:59] 2025-07-28 21:48:26,749 | INFO     | . initial setup = 7 s
[2025-07-29 06:48:59] 2025-07-28 21:48:26,749 | INFO     | . payload setup = 4 s
[2025-07-29 06:48:59] 2025-07-28 21:48:26,749 | INFO     | . stage-in = 0 s
[2025-07-29 06:48:59] 2025-07-28 21:48:26,749 | INFO     | . payload execution = 7361 s
[2025-07-29 06:48:59] 2025-07-28 21:48:26,749 | INFO     | . stage-out = 0 s
[2025-07-29 06:48:59] 2025-07-28 21:48:26,749 | INFO     | . log creation = 0 s
[2025-07-29 06:48:59] 2025-07-28 21:48:26,749 | INFO     | ..............................
[2025-07-29 06:48:59] 2025-07-28 21:48:26,825 | INFO     | 
[2025-07-29 06:48:59] 2025-07-28 21:48:26,825 | INFO     | job summary report
[2025-07-29 06:48:59] 2025-07-28 21:48:26,825 | INFO     | --------------------------------------------------
[2025-07-29 06:48:59] 2025-07-28 21:48:26,825 | INFO     | PanDA job id: 6747678647
[2025-07-29 06:48:59] 2025-07-28 21:48:26,825 | INFO     | task id: 45743349
[2025-07-29 06:48:59] 2025-07-28 21:48:26,826 | INFO     | errors: (none)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,826 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 06:48:59] 2025-07-28 21:48:26,826 | INFO     | pilot state: finished 
[2025-07-29 06:48:59] 2025-07-28 21:48:26,826 | INFO     | transexitcode: 0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,826 | INFO     | exeerrorcode: 0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,826 | INFO     | exeerrordiag: 
[2025-07-29 06:48:59] 2025-07-28 21:48:26,826 | INFO     | exitcode: 0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,826 | INFO     | exitmsg: OK
[2025-07-29 06:48:59] 2025-07-28 21:48:26,826 | INFO     | cpuconsumptiontime: 38964 s
[2025-07-29 06:48:59] 2025-07-28 21:48:26,827 | INFO     | nevents: 400
[2025-07-29 06:48:59] 2025-07-28 21:48:26,827 | INFO     | neventsw: 0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,827 | INFO     | pid: 733513
[2025-07-29 06:48:59] 2025-07-28 21:48:26,827 | INFO     | size of work directory /var/lib/boinc/slots/0/PanDA_Pilot-6747678647: 2724590 B (within 2537553920 B limit)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,827 | INFO     | pgrp: 733513
[2025-07-29 06:48:59] 2025-07-28 21:48:26,827 | INFO     | pfn file=/var/lib/boinc/slots/0/PanDA_Pilot-6747678647/HITS.45743349._055059.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,827 | INFO     | corecount: 6
[2025-07-29 06:48:59] 2025-07-28 21:48:26,827 | INFO     | total size of present files: 0 B (workdir size: 2724590 B)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,828 | INFO     | event service: False
[2025-07-29 06:48:59] 2025-07-28 21:48:26,828 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/0/PanDA_Pilot-6747678647/HITS.45743349._055059.pool.root.1 since it does not exist
[2025-07-29 06:48:59] 2025-07-28 21:48:26,828 | INFO     | sizes: {0: 2391676, 1: 2391931, 3: 2392193, 12: 2392221, 7369: 2419696, 7370: 2428694, 7372: 2428878, 7376: 2429072}
[2025-07-29 06:48:59] 2025-07-28 21:48:26,829 | INFO     | --------------------------------------------------
[2025-07-29 06:48:59] 2025-07-28 21:48:26,829 | INFO     | 
[2025-07-29 06:48:59] 2025-07-28 21:48:26,829 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,840 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | job 6747678647 has completed (purged errors)
[2025-07-29 06:48:59] 2025-07-28 21:48:26,841 | INFO     | overall cleanup function is called
[2025-07-29 06:48:59] 2025-07-28 21:48:26,997 | INFO     | PID=726973 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-29 06:48:59] 2025-07-28 21:48:26,998 | INFO     | .. there are 2 such processes running
[2025-07-29 06:48:59] 2025-07-28 21:48:27,000 | INFO     | number of running child processes to parent process 733513: 1
[2025-07-29 06:48:59] 2025-07-28 21:48:27,000 | INFO     | maximum number of monitored processes: 6
[2025-07-29 06:48:59] 2025-07-28 21:48:27,001 | INFO     | aborting job monitoring since job object (job id=6747678647) has expired
[2025-07-29 06:48:59] 2025-07-28 21:48:27,848 | INFO     | --- collectZombieJob: --- 10, [733513]
[2025-07-29 06:48:59] 2025-07-28 21:48:27,848 | INFO     | zombie collector waiting for pid 733513
[2025-07-29 06:48:59] 2025-07-28 21:48:27,848 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 06:48:59] 2025-07-28 21:48:27,848 | INFO     | collected zombie processes
[2025-07-29 06:48:59] 2025-07-28 21:48:27,849 | INFO     | will attempt to kill all subprocesses of pid=733513
[2025-07-29 06:48:59] 2025-07-28 21:48:27,939 | INFO     | process IDs to be killed: [733513] (in reverse order)
[2025-07-29 06:48:59] 2025-07-28 21:48:27,968 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 06:48:59] 2025-07-28 21:48:27,968 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 06:48:59] 2025-07-28 21:48:27,971 | INFO     | did not find any defunct processes belonging to 733513
[2025-07-29 06:48:59] 2025-07-28 21:48:27,974 | INFO     | did not find any defunct processes belonging to 733513
[2025-07-29 06:48:59] 2025-07-28 21:48:27,974 | INFO     | ready for new job
[2025-07-29 06:48:59] 2025-07-28 21:48:27,974 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 06:48:59] 2025-07-28 21:48:27,975 | INFO     | ***************************************
[2025-07-29 06:48:59] 2025-07-28 21:48:27,975 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 06:48:59] 2025-07-28 21:48:27,975 | INFO     | ***************************************
[2025-07-29 06:48:59] 2025-07-28 21:48:27,975 | INFO     | 
[2025-07-29 06:48:59] 2025-07-28 21:48:27,976 | INFO     | architecture information:
[2025-07-29 06:48:59] 2025-07-28 21:48:27,976 | INFO     | executing command: cat /etc/os-release
[2025-07-29 06:48:59] 2025-07-28 21:48:27,985 | INFO     | cat /etc/os-release:
[2025-07-29 06:48:59] NAME="CentOS Linux"
[2025-07-29 06:48:59] VERSION="7 (Core)"
[2025-07-29 06:48:59] ID="centos"
[2025-07-29 06:48:59] ID_LIKE="rhel fedora"
[2025-07-29 06:48:59] VERSION_ID="7"
[2025-07-29 06:48:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 06:48:59] ANSI_COLOR="0;31"
[2025-07-29 06:48:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 06:48:59] HOME_URL="https://www.centos.org/"
[2025-07-29 06:48:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 06:48:59] 
[2025-07-29 06:48:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 06:48:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 06:48:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 06:48:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 06:48:59] 
[2025-07-29 06:48:59] 2025-07-28 21:48:27,985 | INFO     | ***************************************
[2025-07-29 06:48:59] 2025-07-28 21:48:28,488 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-29 06:48:59] 2025-07-28 21:48:28,497 | INFO     | sufficient remaining disk space (100886642688 B)
[2025-07-29 06:48:59] 2025-07-28 21:48:28,497 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 06:48:59] 2025-07-28 21:48:28,497 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 06:48:59] 2025-07-28 21:48:28,497 | INFO     | update_server=False
[2025-07-29 06:48:59] 2025-07-28 21:48:28,497 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 06:48:59] 2025-07-28 21:48:28,497 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 06:48:59] 2025-07-28 21:48:28,498 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 06:48:59] 2025-07-28 21:48:28,498 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 06:48:59] 2025-07-28 21:48:28,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 06:48:59] 2025-07-28 21:48:28,498 | INFO     | aborting loop
[2025-07-29 06:48:59] 2025-07-28 21:48:29,413 | INFO     | all data control threads have been joined
[2025-07-29 06:48:59] 2025-07-28 21:48:29,470 | INFO     | all job control threads have been joined
[2025-07-29 06:48:59] 2025-07-28 21:48:29,502 | INFO     | [job] queue monitor thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:29,503 | INFO     | [job] retrieve thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:29,503 | INFO     | [job] job monitor thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:29,707 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:29,748 | INFO     | [data] copytool_in thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:29,835 | INFO     | [job] validate thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:29,836 | INFO     | all payload control threads have been joined
[2025-07-29 06:48:59] 2025-07-28 21:48:29,912 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:30,043 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:30,397 | INFO     | [payload] failed_post thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:30,399 | INFO     | [payload] validate_post thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:30,418 | INFO     | [data] control thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:30,475 | INFO     | [job] control thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:30,503 | INFO     | [data] copytool_out thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:30,841 | INFO     | [payload] control thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:32,503 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:39,403 | INFO     | job.realtimelogging is not enabled
[2025-07-29 06:48:59] 2025-07-28 21:48:40,408 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 06:48:59] 2025-07-28 21:48:42,149 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672958547776)>', '<ExcThread(monitor, started 139672319678208)>']
[2025-07-29 06:48:59] 2025-07-28 21:48:47,174 | INFO     | all workflow threads have been joined
[2025-07-29 06:48:59] 2025-07-28 21:48:47,174 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 06:48:59] 2025-07-28 21:48:47,174 | INFO     | traces error code: 0
[2025-07-29 06:48:59] 2025-07-28 21:48:47,175 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 06:48:59] 2025-07-28 21:48:59,160 | INFO     | PID=726973 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-29 06:48:59] 2025-07-28 21:48:59,166 | INFO     | .. there are 2 such processes running
[2025-07-29 06:48:59] 2025-07-28 21:48:59,166 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 06:48:59] 2025-07-28 21:48:59,166 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 06:48:59] 2025-07-28 21:48:59,166 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 06:48:59] 2025-07-28 21:48:59,166 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 06:48:59] 2025-07-28 21:48:59,166 | INFO     | [monitor] control thread has ended
[2025-07-29 06:48:59] 2025-07-28 21:48:59,234 [wrapper] ==== pilot stdout END ====
[2025-07-29 06:48:59] 2025-07-28 21:48:59,236 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 06:48:59] 2025-07-28 21:48:59,237 [wrapper] pilotpid: 726973
[2025-07-29 06:48:59] 2025-07-28 21:48:59,238 [wrapper] Pilot exit status: 0
[2025-07-29 06:48:59] 2025-07-28 21:48:59,243 [wrapper] pandaids: 6747678647
[2025-07-29 06:48:59] 2025-07-28 21:48:59,263 [wrapper] cleanup supervisor_pilot  775491 726974
[2025-07-29 06:48:59] 2025-07-28 21:48:59,264 [wrapper] Test setup, not cleaning
[2025-07-29 06:48:59] 2025-07-28 21:48:59,266 [wrapper] apfmon messages muted
[2025-07-29 06:48:59] 2025-07-28 21:48:59,267 [wrapper] ==== wrapper stdout END ====
[2025-07-29 06:48:59] 2025-07-28 21:48:59,269 [wrapper] ==== wrapper stderr END ====
[2025-07-29 06:48:59]  *** Error codes and diagnostics ***
[2025-07-29 06:48:59]     "exeErrorCode": 0,
[2025-07-29 06:48:59]     "exeErrorDiag": "",
[2025-07-29 06:48:59]     "pilotErrorCode": 0,
[2025-07-29 06:48:59]     "pilotErrorDiag": "",
[2025-07-29 06:48:59]  *** Listing of results directory ***
[2025-07-29 06:48:59] total 358408
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc    530466 Jul 28 04:51 pilot3.tar.gz
[2025-07-29 06:48:59] -rwx------. 1 boinc boinc     36292 Jul 28 04:58 runpilot2-wrapper.sh
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc      5112 Jul 28 04:58 queuedata.json
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc       100 Jul 29 04:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 06:48:59] -rwxr-xr-x. 1 boinc boinc      7986 Jul 29 04:45 run_atlas
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc       105 Jul 29 04:45 job.xml
[2025-07-29 06:48:59] -rw-r--r--. 2 boinc boinc     15095 Jul 29 04:45 start_atlas.sh
[2025-07-29 06:48:59] drwxrwx--x. 2 boinc boinc        68 Jul 29 04:45 shared
[2025-07-29 06:48:59] -rw-r--r--. 2 boinc boinc    542874 Jul 29 04:45 input.tar.gz
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc      9345 Jul 29 04:45 init_data.xml
[2025-07-29 06:48:59] -rw-r--r--. 2 boinc boinc 149215505 Jul 29 04:45 EVNT.45743347._002866.pool.root.1
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc         0 Jul 29 04:45 boinc_lockfile
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc      2560 Jul 29 04:45 pandaJob.out
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc    977348 Jul 29 04:45 agis_schedconf.cvmfs.json
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc   1589827 Jul 29 04:45 agis_ddmendpoints.agis.ALL.json
[2025-07-29 06:48:59] drwx------. 4 boinc boinc      4096 Jul 29 04:45 pilot3
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc 211925822 Jul 29 06:47 HITS.45743349._055059.pool.root.1
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc       529 Jul 29 06:48 boinc_task_state.xml
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc        95 Jul 29 06:48 pilot_heartbeat.json
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc      1018 Jul 29 06:48 memory_monitor_summary.json
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc    286412 Jul 29 06:48 log.45743349._055059.job.log.tgz.1
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc      7768 Jul 29 06:48 heartbeat.json
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc      8192 Jul 29 06:48 boinc_mmap_file
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc        27 Jul 29 06:48 wrapper_checkpoint.txt
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc       821 Jul 29 06:48 pilotlog.txt
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc    719655 Jul 29 06:48 log.45743349._055059.job.log.1
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc       357 Jul 29 06:48 output.list
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc       620 Jul 29 06:48 runtime_log
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc   1024000 Jul 29 06:48 result.tar.gz
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc      8608 Jul 29 06:48 runtime_log.err
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc       640 Jul 29 06:48 cvJMDmwgM07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyJWLDmjedqen.diag
[2025-07-29 06:48:59] -rw-r--r--. 1 boinc boinc     21464 Jul 29 06:48 stderr.txt
[2025-07-29 06:48:59] HITS file was successfully produced:
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc 211925822 Jul 29 06:47 shared/HITS.pool.root.1
[2025-07-29 06:48:59]  *** Contents of shared directory: ***
[2025-07-29 06:48:59] total 354228
[2025-07-29 06:48:59] -rw-r--r--. 2 boinc boinc     15095 Jul 29 04:45 start_atlas.sh
[2025-07-29 06:48:59] -rw-r--r--. 2 boinc boinc    542874 Jul 29 04:45 input.tar.gz
[2025-07-29 06:48:59] -rw-r--r--. 2 boinc boinc 149215505 Jul 29 04:45 ATLAS.root_0
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc 211925822 Jul 29 06:47 HITS.pool.root.1
[2025-07-29 06:48:59] -rw-------. 1 boinc boinc   1024000 Jul 29 06:48 result.tar.gz
06:49:00 (723232): run_atlas exited; CPU time 39059.480981
06:49:00 (723232): called boinc_finish(0)

</stderr_txt>
]]>

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