Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:19:24 (16243): wrapper (7.7.26015): starting
21:19:24 (16243): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 21:19:24] Arguments: --nthreads 12
[2025-07-27 21:19:24] Threads: 12
[2025-07-27 21:19:24] Checking for CVMFS
[2025-07-27 21:19:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 21:19:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 21:19:24] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 21:19:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 21:19:24] 2.11.2.0 2914 112773 94948 148829 1 59 15603443 20275200 1 130560 0 38442530 99.970 9750674 10664 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 21:19:24] CVMFS is ok
[2025-07-27 21:19:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 21:19:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 21:19:24] Further information can be found at the LHC@home message board.
[2025-07-27 21:19:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:19:24] Checking for apptainer binary...
[2025-07-27 21:19:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 21:19:24] Running /usr/bin/apptainer --version
[2025-07-27 21:19:25] apptainer version 1.3.2-1.el7
[2025-07-27 21:19:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:19:26] c-205-5.aglt2.org
[2025-07-27 21:19:26] apptainer works
[2025-07-27 21:19:26] Set ATHENA_PROC_NUMBER=12
[2025-07-27 21:19:26] Set ATHENA_CORE_NUMBER=12
[2025-07-27 21:19:26] Starting ATLAS job with PandaID=6747674932
[2025-07-27 21:19:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:48:42]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:48:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747674932/log.45743349._055024.job.log.tgz.1
[2025-07-27 22:48:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/41/b6/log.45743349._055024.job.log.tgz.1
[2025-07-27 22:48:42]  workdir=None
[2025-07-27 22:48:42] ]
[2025-07-27 22:48:42] 2025-07-28 02:48:03,546 | INFO     | transferring file log.45743349._055024.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747674932/log.45743349._055024.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:48:42] 2025-07-28 02:48:03,546 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747674932/log.45743349._055024.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._055024.job
[2025-07-27 22:48:42] 2025-07-28 02:48:03,568 | INFO     | adding to output.list: log.45743349._055024.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/41/b6/log.45743349._055024.job.log.tg
[2025-07-27 22:48:42] 2025-07-28 02:48:03,569 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:48:42] 2025-07-28 02:48:03,569 | INFO     | summary of transferred files:
[2025-07-27 22:48:42] 2025-07-28 02:48:03,570 | INFO     |  -- lfn=log.45743349._055024.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:48:42] 2025-07-28 02:48:03,570 | INFO     | stage-out finished correctly
[2025-07-27 22:48:42] 2025-07-28 02:48:03,818 | INFO     | PID=19837 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 22:48:42] 2025-07-28 02:48:05,383 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:48:42] 2025-07-28 02:48:05,467 | INFO     | job 6747674932 has state=finished
[2025-07-27 22:48:42] 2025-07-28 02:48:05,490 | INFO     | preparing for final server update for job 6747674932 in state='finished'
[2025-07-27 22:48:42] 2025-07-28 02:48:05,491 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:48:42] 2025-07-28 02:48:05,491 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:48:42] 2025-07-28 02:48:05,491 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:48:42] 2025-07-28 02:48:05,491 | INFO     | job 6747674932 has finished - writing final server update
[2025-07-27 22:48:42] 2025-07-28 02:48:05,492 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:48:42] 2025-07-28 02:48:05,493 | INFO     | executing command: lscpu
[2025-07-27 22:48:42] 2025-07-28 02:48:05,519 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:48:42] 2025-07-28 02:48:07,825 | WARNING  | process 26909 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 22:48:42] 2025-07-28 02:48:07,826 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747674932/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:48:42] 2025-07-28 02:48:07,827 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747674932/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:48:42] 2025-07-28 02:48:07,828 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4438294 B
[2025-07-27 22:48:42] 2025-07-28 02:48:07,828 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15789 B
[2025-07-27 22:48:42] 2025-07-28 02:48:07,828 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:48:42] 2025-07-28 02:48:10,556 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 22:48:42] 2025-07-28 02:48:10,563 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1717.9166666666667
[2025-07-27 22:48:42] 2025-07-28 02:48:10,567 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747674932/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,567 | INFO     | extracted standard info from prmon json
[2025-07-27 22:48:42] 2025-07-28 02:48:10,567 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:48:42] 2025-07-28 02:48:10,568 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:48:42] 2025-07-28 02:48:10,568 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:48:42] 2025-07-28 02:48:10,568 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:48:42] 2025-07-28 02:48:10,570 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:48:42] 2025-07-28 02:48:10,570 | INFO     | sum of square deviations: 158737860.0
[2025-07-27 22:48:42] 2025-07-28 02:48:10,571 | INFO     | sum of deviations: 1695222818.0
[2025-07-27 22:48:42] 2025-07-28 02:48:10,571 | INFO     | mean x: 1753668325.5
[2025-07-27 22:48:42] 2025-07-28 02:48:10,571 | INFO     | mean y: 2700056.15
[2025-07-27 22:48:42] 2025-07-28 02:48:10,571 | INFO     | -- intersect: -18725400225.60667
[2025-07-27 22:48:42] 2025-07-28 02:48:10,571 | INFO     | intersect: -18725400225.60667
[2025-07-27 22:48:42] 2025-07-28 02:48:10,571 | INFO     | chi2: 0.11989577709074023
[2025-07-27 22:48:42] 2025-07-28 02:48:10,571 | INFO     | -- intersect: -18725400225.60667
[2025-07-27 22:48:42] 2025-07-28 02:48:10,572 | INFO     | current memory leak: 10.68 B/s (using 80 data points, chi2=0.12)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,572 | INFO     | could have reported an average CPU frequency of 2052 MHz (6 samples)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,572 | INFO     | ..............................
[2025-07-27 22:48:42] 2025-07-28 02:48:10,572 | INFO     | . Timing measurements:
[2025-07-27 22:48:42] 2025-07-28 02:48:10,572 | INFO     | . get job = 0 s
[2025-07-27 22:48:42] 2025-07-28 02:48:10,572 | INFO     | . initial setup = 2 s
[2025-07-27 22:48:42] 2025-07-28 02:48:10,572 | INFO     | . payload setup = 9 s
[2025-07-27 22:48:42] 2025-07-28 02:48:10,573 | INFO     | . stage-in = 0 s
[2025-07-27 22:48:42] 2025-07-28 02:48:10,573 | INFO     | . payload execution = 5273 s
[2025-07-27 22:48:42] 2025-07-28 02:48:10,573 | INFO     | . stage-out = 0 s
[2025-07-27 22:48:42] 2025-07-28 02:48:10,573 | INFO     | . log creation = 0 s
[2025-07-27 22:48:42] 2025-07-28 02:48:10,573 | INFO     | ..............................
[2025-07-27 22:48:42] 2025-07-28 02:48:10,574 | INFO     | sufficient remaining disk space (29336010752 B)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,574 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,658 | INFO     | 
[2025-07-27 22:48:42] 2025-07-28 02:48:10,658 | INFO     | job summary report
[2025-07-27 22:48:42] 2025-07-28 02:48:10,659 | INFO     | --------------------------------------------------
[2025-07-27 22:48:42] 2025-07-28 02:48:10,659 | INFO     | PanDA job id: 6747674932
[2025-07-27 22:48:42] 2025-07-28 02:48:10,659 | INFO     | task id: 45743349
[2025-07-27 22:48:42] 2025-07-28 02:48:10,659 | INFO     | errors: (none)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,660 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:48:42] 2025-07-28 02:48:10,660 | INFO     | pilot state: finished 
[2025-07-27 22:48:42] 2025-07-28 02:48:10,660 | INFO     | transexitcode: 0
[2025-07-27 22:48:42] 2025-07-28 02:48:10,660 | INFO     | exeerrorcode: 0
[2025-07-27 22:48:42] 2025-07-28 02:48:10,661 | INFO     | exeerrordiag: 
[2025-07-27 22:48:42] 2025-07-28 02:48:10,661 | INFO     | exitcode: 0
[2025-07-27 22:48:42] 2025-07-28 02:48:10,661 | INFO     | exitmsg: OK
[2025-07-27 22:48:42] 2025-07-28 02:48:10,661 | INFO     | cpuconsumptiontime: 56661 s
[2025-07-27 22:48:42] 2025-07-28 02:48:10,661 | INFO     | nevents: 400
[2025-07-27 22:48:42] 2025-07-28 02:48:10,661 | INFO     | neventsw: 0
[2025-07-27 22:48:42] 2025-07-28 02:48:10,661 | INFO     | pid: 26909
[2025-07-27 22:48:42] 2025-07-28 02:48:10,662 | INFO     | pgrp: 26909
[2025-07-27 22:48:42] 2025-07-28 02:48:10,662 | INFO     | corecount: 12
[2025-07-27 22:48:42] 2025-07-28 02:48:10,662 | INFO     | event service: False
[2025-07-27 22:48:42] 2025-07-28 02:48:10,662 | INFO     | sizes: {0: 2397254, 1: 2397453, 6: 2397715, 11: 2397743, 5287: 2424236, 5288: 2433234, 5290: 2433418, 5295: 2433612}
[2025-07-27 22:48:42] 2025-07-28 02:48:10,662 | INFO     | --------------------------------------------------
[2025-07-27 22:48:42] 2025-07-28 02:48:10,662 | INFO     | 
[2025-07-27 22:48:42] 2025-07-28 02:48:10,663 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:48:42] 2025-07-28 02:48:10,666 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6747674932: 4742213 B (within 2537553920 B limit)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,667 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6747674932/HITS.45743349._055024.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,667 | INFO     | total size of present files: 0 B (workdir size: 4742213 B)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,667 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6747674932/HITS.45743349._055024.pool.root.1 since it does not exist
[2025-07-27 22:48:42] 2025-07-28 02:48:10,685 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,685 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,688 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,688 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,688 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,688 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,689 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,689 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,689 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,689 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,690 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:48:42] 2025-07-28 02:48:10,690 | INFO     | job 6747674932 has completed (purged errors)
[2025-07-27 22:48:42] 2025-07-28 02:48:10,690 | INFO     | overall cleanup function is called
[2025-07-27 22:48:42] 2025-07-28 02:48:10,766 | INFO     | number of running child processes to parent process 26909: 1
[2025-07-27 22:48:42] 2025-07-28 02:48:10,767 | INFO     | maximum number of monitored processes: 6
[2025-07-27 22:48:42] 2025-07-28 02:48:10,767 | INFO     | aborting job monitoring since job object (job id=6747674932) has expired
[2025-07-27 22:48:42] 2025-07-28 02:48:11,699 | INFO     | --- collectZombieJob: --- 10, [26909]
[2025-07-27 22:48:42] 2025-07-28 02:48:11,699 | INFO     | zombie collector waiting for pid 26909
[2025-07-27 22:48:42] 2025-07-28 02:48:11,699 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:48:42] 2025-07-28 02:48:11,700 | INFO     | collected zombie processes
[2025-07-27 22:48:42] 2025-07-28 02:48:11,700 | INFO     | will attempt to kill all subprocesses of pid=26909
[2025-07-27 22:48:42] 2025-07-28 02:48:11,791 | INFO     | process IDs to be killed: [26909] (in reverse order)
[2025-07-27 22:48:42] 2025-07-28 02:48:11,842 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:48:42] 2025-07-28 02:48:11,842 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:48:42] 2025-07-28 02:48:11,846 | INFO     | did not find any defunct processes belonging to 26909
[2025-07-27 22:48:42] 2025-07-28 02:48:11,849 | INFO     | did not find any defunct processes belonging to 26909
[2025-07-27 22:48:42] 2025-07-28 02:48:11,849 | INFO     | ready for new job
[2025-07-27 22:48:42] 2025-07-28 02:48:11,849 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:48:42] 2025-07-28 02:48:11,851 | INFO     | ***************************************
[2025-07-27 22:48:42] 2025-07-28 02:48:11,851 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:48:42] 2025-07-28 02:48:11,851 | INFO     | ***************************************
[2025-07-27 22:48:42] 2025-07-28 02:48:11,852 | INFO     | 
[2025-07-27 22:48:42] 2025-07-28 02:48:11,852 | INFO     | architecture information:
[2025-07-27 22:48:42] 2025-07-28 02:48:11,853 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:48:42] 2025-07-28 02:48:11,869 | INFO     | cat /etc/os-release:
[2025-07-27 22:48:42] NAME="CentOS Linux"
[2025-07-27 22:48:42] VERSION="7 (Core)"
[2025-07-27 22:48:42] ID="centos"
[2025-07-27 22:48:42] ID_LIKE="rhel fedora"
[2025-07-27 22:48:42] VERSION_ID="7"
[2025-07-27 22:48:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:48:42] ANSI_COLOR="0;31"
[2025-07-27 22:48:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:48:42] HOME_URL="https://www.centos.org/"
[2025-07-27 22:48:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:48:42] 
[2025-07-27 22:48:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:48:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:48:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:48:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:48:42] 
[2025-07-27 22:48:42] 2025-07-28 02:48:11,870 | INFO     | ***************************************
[2025-07-27 22:48:42] 2025-07-28 02:48:12,372 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:48:42] 2025-07-28 02:48:12,390 | INFO     | sufficient remaining disk space (29341253632 B)
[2025-07-27 22:48:42] 2025-07-28 02:48:12,390 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:48:42] 2025-07-28 02:48:12,390 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:48:42] 2025-07-28 02:48:12,391 | INFO     | update_server=False
[2025-07-27 22:48:42] 2025-07-28 02:48:12,391 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:48:42] 2025-07-28 02:48:12,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:48:42] 2025-07-28 02:48:12,392 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:48:42] 2025-07-28 02:48:12,392 | INFO     | aborting loop
[2025-07-27 22:48:42] 2025-07-28 02:48:12,392 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:48:42] 2025-07-28 02:48:12,392 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:48:42] 2025-07-28 02:48:12,672 | INFO     | all data control threads have been joined
[2025-07-27 22:48:42] 2025-07-28 02:48:13,052 | INFO     | all payload control threads have been joined
[2025-07-27 22:48:42] 2025-07-28 02:48:13,392 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:13,397 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:13,397 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:13,402 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:13,512 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:13,677 | INFO     | [data] control thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:13,809 | INFO     | all job control threads have been joined
[2025-07-27 22:48:42] 2025-07-28 02:48:14,055 | INFO     | [payload] control thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:14,061 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:14,226 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:14,333 | INFO     | [job] validate thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:14,398 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:14,474 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:14,621 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:14,815 | INFO     | [job] control thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:16,398 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:22,788 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:48:42] 2025-07-28 02:48:23,793 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:48:42] 2025-07-28 02:48:25,825 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474275432256)>', '<ExcThread(monitor, started 140473465296640)>']
[2025-07-27 22:48:42] 2025-07-28 02:48:30,845 | INFO     | all workflow threads have been joined
[2025-07-27 22:48:42] 2025-07-28 02:48:30,845 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:48:42] 2025-07-28 02:48:30,846 | INFO     | traces error code: 0
[2025-07-27 22:48:42] 2025-07-28 02:48:30,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:48:42] 2025-07-28 02:48:42,023 | INFO     | PID=19837 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 22:48:42] 2025-07-28 02:48:42,023 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:48:42] 2025-07-28 02:48:42,023 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:48:42] 2025-07-28 02:48:42,023 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:48:42] 2025-07-28 02:48:42,023 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:48:42] 2025-07-28 02:48:42,024 | INFO     | [monitor] control thread has ended
[2025-07-27 22:48:42] 2025-07-28 02:48:42,107 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:48:42] 2025-07-28 02:48:42,112 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:48:42] 2025-07-28 02:48:42,115 [wrapper] pilotpid: 19837
[2025-07-27 22:48:42] 2025-07-28 02:48:42,120 [wrapper] Pilot exit status: 0
[2025-07-27 22:48:42] 2025-07-28 02:48:42,136 [wrapper] pandaids: 6747674932
[2025-07-27 22:48:42] 2025-07-28 02:48:42,178 [wrapper] cleanup supervisor_pilot 12738 19838
[2025-07-27 22:48:42] 2025-07-28 02:48:42,182 [wrapper] Test setup, not cleaning
[2025-07-27 22:48:42] 2025-07-28 02:48:42,187 [wrapper] apfmon messages muted
[2025-07-27 22:48:42] 2025-07-28 02:48:42,190 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:48:42] 2025-07-28 02:48:42,194 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:48:42]  *** Error codes and diagnostics ***
[2025-07-27 22:48:42]     "exeErrorCode": 0,
[2025-07-27 22:48:42]     "exeErrorDiag": "",
[2025-07-27 22:48:42]     "pilotErrorCode": 0,
[2025-07-27 22:48:42]     "pilotErrorDiag": "",
[2025-07-27 22:48:42]  *** Listing of results directory ***
[2025-07-27 22:48:42] total 439872
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 15:51 pilot3.tar.gz
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 15:56 queuedata.json
[2025-07-27 22:48:42] -rwx------ 1 boincer umatlas     36292 Jul 27 15:57 runpilot2-wrapper.sh
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas       100 Jul 27 21:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:48:42] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 21:19 run_atlas
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas       105 Jul 27 21:19 job.xml
[2025-07-27 22:48:42] -rw-r--r-- 2 boincer umatlas 228374335 Jul 27 21:19 EVNT.45743347._001435.pool.root.1
[2025-07-27 22:48:42] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 21:19 start_atlas.sh
[2025-07-27 22:48:42] drwxrwx--x 2 boincer umatlas      4096 Jul 27 21:19 shared
[2025-07-27 22:48:42] -rw-r--r-- 2 boincer umatlas    542898 Jul 27 21:19 input.tar.gz
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas         0 Jul 27 21:19 boinc_lockfile
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 21:19 pandaJob.out
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas    980125 Jul 27 21:19 agis_schedconf.cvmfs.json
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas   1593052 Jul 27 21:19 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:48:42] drwx------ 4 boincer umatlas      4096 Jul 27 21:19 pilot3
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas      5866 Jul 27 22:38 init_data.xml
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas 216422851 Jul 27 22:47 HITS.45743349._055024.pool.root.1
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas       529 Jul 27 22:47 boinc_task_state.xml
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas        95 Jul 27 22:47 pilot_heartbeat.json
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas      1049 Jul 27 22:47 memory_monitor_summary.json
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas    377688 Jul 27 22:48 log.45743349._055024.job.log.tgz.1
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas      7855 Jul 27 22:48 heartbeat.json
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 22:48 boinc_mmap_file
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas        27 Jul 27 22:48 wrapper_checkpoint.txt
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas       745 Jul 27 22:48 pilotlog.txt
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas    502498 Jul 27 22:48 log.45743349._055024.job.log.1
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas       357 Jul 27 22:48 output.list
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas       620 Jul 27 22:48 runtime_log
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas    901120 Jul 27 22:48 result.tar.gz
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 22:48 runtime_log.err
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas       658 Jul 27 22:48 EqyNDmxfM07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfJWLDmtILq6n.diag
[2025-07-27 22:48:42] -rw-r--r-- 1 boincer umatlas     22648 Jul 27 22:48 stderr.txt
[2025-07-27 22:48:42] HITS file was successfully produced:
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas 216422851 Jul 27 22:47 shared/HITS.pool.root.1
[2025-07-27 22:48:42]  *** Contents of shared directory: ***
[2025-07-27 22:48:42] total 435804
[2025-07-27 22:48:42] -rw-r--r-- 2 boincer umatlas 228374335 Jul 27 21:19 ATLAS.root_0
[2025-07-27 22:48:42] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 21:19 start_atlas.sh
[2025-07-27 22:48:42] -rw-r--r-- 2 boincer umatlas    542898 Jul 27 21:19 input.tar.gz
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas 216422851 Jul 27 22:47 HITS.pool.root.1
[2025-07-27 22:48:42] -rw------- 1 boincer umatlas    901120 Jul 27 22:48 result.tar.gz
22:48:44 (16243): run_atlas exited; CPU time 56637.988244
22:48:44 (16243): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN