Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:15:31 (2273925): wrapper (7.7.26015): starting
12:15:31 (2273925): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 12:15:31] Arguments: --nthreads 6
[2025-07-28 12:15:31] Threads: 6
[2025-07-28 12:15:31] Checking for CVMFS
[2025-07-28 12:15:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 12:15:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 12:15:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 12:15:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 12:15:32] 2.11.5.0 2723278 4662 75096 148832 0 187 52236704 52428800 912 130560 0 10383480 99.997 160428 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 12:15:32] CVMFS is ok
[2025-07-28 12:15:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 12:15:32] Checking for apptainer binary...
[2025-07-28 12:15:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 12:15:32] Running /usr/bin/apptainer --version
[2025-07-28 12:15:32] apptainer version 1.3.5-1.el9
[2025-07-28 12:15:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 12:15:32] testio008
[2025-07-28 12:15:32] apptainer works
[2025-07-28 12:15:32] Set ATHENA_PROC_NUMBER=6
[2025-07-28 12:15:32] Set ATHENA_CORE_NUMBER=6
[2025-07-28 12:15:32] Starting ATLAS job with PandaID=6747731592
[2025-07-28 12:15:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 13:43:22]  *** The last 200 lines of the pilot log: ***
[2025-07-28 13:43:22]  scope=mc23_13p6TeV
[2025-07-28 13:43:22]  status=None
[2025-07-28 13:43:22]  status_code=0
[2025-07-28 13:43:22]  storage_token=
[2025-07-28 13:43:22]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6747731592/log.45743349._055207.job.log.tgz.1
[2025-07-28 13:43:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/9c/log.45743349._055207.job.log.tgz.1
[2025-07-28 13:43:22]  workdir=None
[2025-07-28 13:43:22] ]
[2025-07-28 13:43:22] 2025-07-28 04:42:48,368 | INFO     | transferring file log.45743349._055207.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6747731592/log.45743349._055207.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 13:43:22] 2025-07-28 04:42:48,368 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6747731592/log.45743349._055207.job.log.tgz.1 /var/lib/boinc/slots/1/log.45743349._055207.job
[2025-07-28 13:43:22] 2025-07-28 04:42:48,375 | INFO     | adding to output.list: log.45743349._055207.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/9c/log.45743349._055207.job.log.tg
[2025-07-28 13:43:22] 2025-07-28 04:42:48,375 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 13:43:22] 2025-07-28 04:42:48,375 | INFO     | summary of transferred files:
[2025-07-28 13:43:22] 2025-07-28 04:42:48,376 | INFO     |  -- lfn=log.45743349._055207.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 13:43:22] 2025-07-28 04:42:48,376 | INFO     | stage-out finished correctly
[2025-07-28 13:43:22] 2025-07-28 04:42:49,272 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 13:43:22] 2025-07-28 04:42:49,303 | INFO     | job 6747731592 has state=finished
[2025-07-28 13:43:22] 2025-07-28 04:42:49,303 | INFO     | preparing for final server update for job 6747731592 in state='finished'
[2025-07-28 13:43:22] 2025-07-28 04:42:49,303 | INFO     | this job has now completed (state=finished)
[2025-07-28 13:43:22] 2025-07-28 04:42:49,303 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 13:43:22] 2025-07-28 04:42:49,303 | INFO     | log transfer has been attempted: DONE
[2025-07-28 13:43:22] 2025-07-28 04:42:49,303 | INFO     | job 6747731592 has finished - writing final server update
[2025-07-28 13:43:22] 2025-07-28 04:42:49,303 | INFO     | total number of processed events: 400 (read)
[2025-07-28 13:43:22] 2025-07-28 04:42:49,303 | INFO     | executing command: lscpu
[2025-07-28 13:43:22] 2025-07-28 04:42:49,312 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 13:43:22] 2025-07-28 04:42:50,391 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 13:43:22] 2025-07-28 04:42:50,392 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 3903.77495
[2025-07-28 13:43:22] 2025-07-28 04:42:50,393 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6747731592/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 13:43:22] 2025-07-28 04:42:50,393 | INFO     | extracted standard info from prmon json
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | fitting pss+swap vs Time
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | sum of square deviations: 152858680.0
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | sum of deviations: 15821912454.000004
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | mean x: 1753675238.0
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | mean y: 2397544.64556962
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | -- intersect: -181514910392.2254
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | intersect: -181514910392.2254
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | chi2: 1.9205090834833765
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | -- intersect: -181514910392.2254
[2025-07-28 13:43:22] 2025-07-28 04:42:50,394 | INFO     | current memory leak: 103.51 B/s (using 79 data points, chi2=1.92)
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | could have reported an average CPU frequency of 3899 MHz (6 samples)
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | ..............................
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | . Timing measurements:
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | . get job = 0 s
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | . initial setup = 4 s
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | . payload setup = 1 s
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | . stage-in = 0 s
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | . payload execution = 5212 s
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | . stage-out = 0 s
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | . log creation = 0 s
[2025-07-28 13:43:22] 2025-07-28 04:42:50,395 | INFO     | ..............................
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | 
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | job summary report
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | --------------------------------------------------
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | PanDA job id: 6747731592
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | task id: 45743349
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | errors: (none)
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | pilot state: finished 
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | transexitcode: 0
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | exeerrorcode: 0
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | exeerrordiag: 
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | exitcode: 0
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | exitmsg: OK
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | cpuconsumptiontime: 26402 s
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | nevents: 400
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | neventsw: 0
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | pid: 2286266
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | pgrp: 2286266
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | corecount: 6
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | event service: False
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | sizes: {0: 2397422, 1: 2397684, 11: 2397712, 5217: 2433122, 5218: 2433122, 5219: 2433316}
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | --------------------------------------------------
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | 
[2025-07-28 13:43:22] 2025-07-28 04:42:50,418 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-07-28 13:43:22] 2025-07-28 04:42:50,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,425 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,425 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | job 6747731592 has completed (purged errors)
[2025-07-28 13:43:22] 2025-07-28 04:42:50,426 | INFO     | overall cleanup function is called
[2025-07-28 13:43:22] 2025-07-28 04:42:51,432 | INFO     | --- collectZombieJob: --- 10, [2286266]
[2025-07-28 13:43:22] 2025-07-28 04:42:51,432 | INFO     | zombie collector waiting for pid 2286266
[2025-07-28 13:43:22] 2025-07-28 04:42:51,432 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 13:43:22] 2025-07-28 04:42:51,433 | INFO     | collected zombie processes
[2025-07-28 13:43:22] 2025-07-28 04:42:51,433 | INFO     | will attempt to kill all subprocesses of pid=2286266
[2025-07-28 13:43:22] 2025-07-28 04:42:51,455 | INFO     | process IDs to be killed: [2286266] (in reverse order)
[2025-07-28 13:43:22] 2025-07-28 04:42:51,470 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 13:43:22] 2025-07-28 04:42:51,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 13:43:22] 2025-07-28 04:42:51,470 | INFO     | did not find any defunct processes belonging to 2286266
[2025-07-28 13:43:22] 2025-07-28 04:42:51,471 | INFO     | did not find any defunct processes belonging to 2286266
[2025-07-28 13:43:22] 2025-07-28 04:42:51,471 | INFO     | ready for new job
[2025-07-28 13:43:22] 2025-07-28 04:42:51,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 13:43:22] 2025-07-28 04:42:51,472 | INFO     | ***************************************
[2025-07-28 13:43:22] 2025-07-28 04:42:51,472 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 13:43:22] 2025-07-28 04:42:51,472 | INFO     | ***************************************
[2025-07-28 13:43:22] 2025-07-28 04:42:51,472 | INFO     | 
[2025-07-28 13:43:22] 2025-07-28 04:42:51,472 | INFO     | architecture information:
[2025-07-28 13:43:22] 2025-07-28 04:42:51,472 | INFO     | executing command: cat /etc/os-release
[2025-07-28 13:43:22] 2025-07-28 04:42:51,476 | INFO     | cat /etc/os-release:
[2025-07-28 13:43:22] NAME="CentOS Linux"
[2025-07-28 13:43:22] VERSION="7 (Core)"
[2025-07-28 13:43:22] ID="centos"
[2025-07-28 13:43:22] ID_LIKE="rhel fedora"
[2025-07-28 13:43:22] VERSION_ID="7"
[2025-07-28 13:43:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 13:43:22] ANSI_COLOR="0;31"
[2025-07-28 13:43:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 13:43:22] HOME_URL="https://www.centos.org/"
[2025-07-28 13:43:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 13:43:22] 
[2025-07-28 13:43:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 13:43:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 13:43:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 13:43:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 13:43:22] 
[2025-07-28 13:43:22] 2025-07-28 04:42:51,477 | INFO     | ***************************************
[2025-07-28 13:43:22] 2025-07-28 04:42:51,979 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-07-28 13:43:22] 2025-07-28 04:42:51,986 | INFO     | sufficient remaining disk space (271042215936 B)
[2025-07-28 13:43:22] 2025-07-28 04:42:51,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 13:43:22] 2025-07-28 04:42:51,986 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 13:43:22] 2025-07-28 04:42:51,987 | INFO     | update_server=False
[2025-07-28 13:43:22] 2025-07-28 04:42:51,987 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 13:43:22] 2025-07-28 04:42:51,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 13:43:22] 2025-07-28 04:42:51,987 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:43:22] 2025-07-28 04:42:52,459 | INFO     | all data control threads have been joined
[2025-07-28 13:43:22] 2025-07-28 04:42:52,558 | INFO     | all job control threads have been joined
[2025-07-28 13:43:22] 2025-07-28 04:42:52,992 | INFO     | [job] retrieve thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:52,992 | INFO     | [job] queue monitor thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:53,017 | INFO     | [job] validate thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:53,028 | INFO     | all payload control threads have been joined
[2025-07-28 13:43:22] 2025-07-28 04:42:53,464 | INFO     | [data] control thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:53,563 | INFO     | [job] control thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:53,598 | INFO     | [data] copytool_in thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:53,626 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:53,803 | WARNING  | process 2286266 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 13:43:22] 2025-07-28 04:42:53,819 | INFO     | using path: /var/lib/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 13:43:22] 2025-07-28 04:42:53,819 | INFO     | using path: /var/lib/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 13:43:22] 2025-07-28 04:42:53,820 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/1/PanDA_Pilot-6747731592/payload.stdout) since it has not been created yet
[2025-07-28 13:43:22] 2025-07-28 04:42:53,820 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-07-28 13:43:22] 2025-07-28 04:42:53,825 | INFO     | sufficient remaining disk space (271041167360 B)
[2025-07-28 13:43:22] 2025-07-28 04:42:53,826 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-07-28 13:43:22] 2025-07-28 04:42:53,826 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-6747731592/HITS.45743349._055207.pool.root.1 since it does not exist
[2025-07-28 13:43:22] 2025-07-28 04:42:53,846 | INFO     | number of running child processes to parent process 2286266: 1
[2025-07-28 13:43:22] 2025-07-28 04:42:53,846 | INFO     | maximum number of monitored processes: 6
[2025-07-28 13:43:22] 2025-07-28 04:42:53,846 | INFO     | aborting job monitoring since job object (job id=6747731592) has expired
[2025-07-28 13:43:22] 2025-07-28 04:42:53,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:43:22] 2025-07-28 04:42:53,846 | INFO     | will abort loop
[2025-07-28 13:43:22] 2025-07-28 04:42:53,951 | INFO     | [payload] validate_post thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:53,992 | INFO     | [data] copytool_out thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:54,033 | INFO     | [payload] control thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:54,138 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:54,378 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:54,419 | INFO     | [payload] failed_post thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:54,850 | INFO     | [job] job monitor thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:42:55,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 13:43:22] 2025-07-28 04:42:59,314 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:43:02,176 | INFO     | job.realtimelogging is not enabled
[2025-07-28 13:43:22] 2025-07-28 04:43:03,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 13:43:22] 2025-07-28 04:43:03,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140489715431232)>', '<ExcThread(monitor, started 140489227486976)>']
[2025-07-28 13:43:22] 2025-07-28 04:43:08,234 | INFO     | all workflow threads have been joined
[2025-07-28 13:43:22] 2025-07-28 04:43:08,234 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 13:43:22] 2025-07-28 04:43:08,234 | INFO     | traces error code: 0
[2025-07-28 13:43:22] 2025-07-28 04:43:08,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 13:43:22] 2025-07-28 04:43:21,954 | INFO     | PID=2279703 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 13:43:22] 2025-07-28 04:43:21,954 | INFO     | .. there are 3 such processes running
[2025-07-28 13:43:22] 2025-07-28 04:43:21,954 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 13:43:22] 2025-07-28 04:43:21,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 13:43:22] 2025-07-28 04:43:21,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 13:43:22] 2025-07-28 04:43:21,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 13:43:22] 2025-07-28 04:43:21,954 | INFO     | [monitor] control thread has ended
[2025-07-28 13:43:22] 2025-07-28 04:43:21,988 [wrapper] ==== pilot stdout END ====
[2025-07-28 13:43:22] 2025-07-28 04:43:21,989 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 13:43:22] 2025-07-28 04:43:21,990 [wrapper] pilotpid: 2279703
[2025-07-28 13:43:22] 2025-07-28 04:43:21,992 [wrapper] Pilot exit status: 0
[2025-07-28 13:43:22] 2025-07-28 04:43:21,995 [wrapper] pandaids: 6747731592
[2025-07-28 13:43:22] 2025-07-28 04:43:22,001 [wrapper] cleanup supervisor_pilot 2323287 2279704
[2025-07-28 13:43:22] 2025-07-28 04:43:22,002 [wrapper] Test setup, not cleaning
[2025-07-28 13:43:22] 2025-07-28 04:43:22,003 [wrapper] apfmon messages muted
[2025-07-28 13:43:22] 2025-07-28 04:43:22,003 [wrapper] ==== wrapper stdout END ====
[2025-07-28 13:43:22] 2025-07-28 04:43:22,004 [wrapper] ==== wrapper stderr END ====
[2025-07-28 13:43:22]  *** Error codes and diagnostics ***
[2025-07-28 13:43:22]     "exeErrorCode": 0,
[2025-07-28 13:43:22]     "exeErrorDiag": "",
[2025-07-28 13:43:22]     "pilotErrorCode": 0,
[2025-07-28 13:43:22]     "pilotErrorDiag": "",
[2025-07-28 13:43:22]  *** Listing of results directory ***
[2025-07-28 13:43:22] total 356880
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc    530466 Jul 28 04:51 pilot3.tar.gz
[2025-07-28 13:43:22] -rwx------. 1 boinc boinc     36292 Jul 28 05:10 runpilot2-wrapper.sh
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc      5112 Jul 28 05:10 queuedata.json
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc       100 Jul 28 12:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 13:43:22] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 12:15 run_atlas
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc       105 Jul 28 12:15 job.xml
[2025-07-28 13:43:22] -rw-r--r--. 2 boinc boinc     15095 Jul 28 12:15 start_atlas.sh
[2025-07-28 13:43:22] drwxrwx--x. 2 boinc boinc        68 Jul 28 12:15 shared
[2025-07-28 13:43:22] -rw-r--r--. 2 boinc boinc    542893 Jul 28 12:15 input.tar.gz
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc      9508 Jul 28 12:15 init_data.xml
[2025-07-28 13:43:22] -rw-r--r--. 2 boinc boinc 149112665 Jul 28 12:15 EVNT.45743347._002292.pool.root.1
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc         0 Jul 28 12:15 boinc_lockfile
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc      2561 Jul 28 12:15 pandaJob.out
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc    980125 Jul 28 12:15 agis_schedconf.cvmfs.json
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc   1593052 Jul 28 12:15 agis_ddmendpoints.agis.ALL.json
[2025-07-28 13:43:22] drwx------. 4 boinc boinc      4096 Jul 28 12:15 pilot3
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc 210906422 Jul 28 13:42 HITS.45743349._055207.pool.root.1
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc       529 Jul 28 13:42 boinc_task_state.xml
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc      1019 Jul 28 13:42 memory_monitor_summary.json
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc    267387 Jul 28 13:42 log.45743349._055207.job.log.tgz.1
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc      7763 Jul 28 13:42 heartbeat.json
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc      8192 Jul 28 13:43 boinc_mmap_file
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc        27 Jul 28 13:43 wrapper_checkpoint.txt
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc       822 Jul 28 13:43 pilotlog.txt
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc        95 Jul 28 13:43 pilot_heartbeat.json
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc    515389 Jul 28 13:43 log.45743349._055207.job.log.1
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc       357 Jul 28 13:43 output.list
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc       620 Jul 28 13:43 runtime_log
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc    798720 Jul 28 13:43 result.tar.gz
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc      8618 Jul 28 13:43 runtime_log.err
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc       642 Jul 28 13:43 b0CMDmCsM07n9Rq4apOajLDm4fhM0noT9bVof3QYDm042KDmAx0Som.diag
[2025-07-28 13:43:22] -rw-r--r--. 1 boinc boinc     21743 Jul 28 13:43 stderr.txt
[2025-07-28 13:43:22] HITS file was successfully produced:
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc 210906422 Jul 28 13:42 shared/HITS.pool.root.1
[2025-07-28 13:43:22]  *** Contents of shared directory: ***
[2025-07-28 13:43:22] total 352912
[2025-07-28 13:43:22] -rw-r--r--. 2 boinc boinc     15095 Jul 28 12:15 start_atlas.sh
[2025-07-28 13:43:22] -rw-r--r--. 2 boinc boinc    542893 Jul 28 12:15 input.tar.gz
[2025-07-28 13:43:22] -rw-r--r--. 2 boinc boinc 149112665 Jul 28 12:15 ATLAS.root_0
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc 210906422 Jul 28 13:42 HITS.pool.root.1
[2025-07-28 13:43:22] -rw-------. 1 boinc boinc    798720 Jul 28 13:43 result.tar.gz
13:43:23 (2273925): run_atlas exited; CPU time 26432.899601
13:43:23 (2273925): called boinc_finish(0)

</stderr_txt>
]]>

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