Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-28 03:17:00 (49684): Detected: vboxwrapper 26206
2025-07-28 03:17:00 (49684): Detected: BOINC client v8.2.5
2025-07-28 03:17:00 (49684): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-07-28 03:17:01 (49684): Successfully copied 'init_data.xml' to the shared directory.
2025-07-28 03:17:01 (49684): Create VM. (boinc_70bf59623b90363f, slot#2)
2025-07-28 03:17:02 (49684): Setting Memory Size for VM. (4096MB)
2025-07-28 03:17:02 (49684): Setting CPU Count for VM. (1)
2025-07-28 03:17:02 (49684): Setting Chipset Options for VM.
2025-07-28 03:17:02 (49684): Setting Graphics Controller Options for VM.
2025-07-28 03:17:03 (49684): Setting Boot Options for VM.
2025-07-28 03:17:03 (49684): Setting Network Configuration for NAT.
2025-07-28 03:17:03 (49684): Enabling VM Network Access.
2025-07-28 03:17:03 (49684): Disabling USB Support for VM.
2025-07-28 03:17:04 (49684): Disabling COM Port Support for VM.
2025-07-28 03:17:04 (49684): Disabling LPT Port Support for VM.
2025-07-28 03:17:04 (49684): Disabling Audio Support for VM.
2025-07-28 03:17:04 (49684): Disabling Clipboard Support for VM.
2025-07-28 03:17:05 (49684): Disabling Drag and Drop Support for VM.
2025-07-28 03:17:05 (49684): Adding storage controller(s) to VM.
2025-07-28 03:17:05 (49684): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-28 03:17:06 (49684): Adding VirtualBox Guest Additions to VM.
2025-07-28 03:17:06 (49684): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-28 03:17:06 (49684): forwarding host port 51652 to guest port 80
2025-07-28 03:17:07 (49684): Enabling remote desktop for VM.
2025-07-28 03:17:07 (49684): Required extension pack not installed, remote desktop not enabled.
2025-07-28 03:17:07 (49684): Enabling shared directory for VM.
2025-07-28 03:17:07 (49684): Starting VM using VBoxManage interface. (boinc_70bf59623b90363f, slot#2)
2025-07-28 03:17:12 (49684): Successfully started VM. (PID = '44160')
2025-07-28 03:17:12 (49684): Reporting VM Process ID to BOINC.
2025-07-28 03:17:12 (49684): Guest Log: BIOS: VirtualBox 7.1.8
2025-07-28 03:17:12 (49684): Guest Log: CPUID EDX: 0x178bfbff
2025-07-28 03:17:12 (49684): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-28 03:17:12 (49684): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-28 03:17:12 (49684): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-28 03:17:12 (49684): Detected: Web Application Enabled (http://localhost:51652)
2025-07-28 03:17:12 (49684): Preference change detected
2025-07-28 03:17:12 (49684): Setting CPU throttle for VM. (100%)
2025-07-28 03:17:12 (49684): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-28 03:17:14 (49684): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-28 03:17:14 (49684): Guest Log: BIOS: Booting from Hard Disk...
2025-07-28 03:17:16 (49684): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-28 03:17:16 (49684): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-28 03:17:16 (49684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-28 03:17:19 (49684): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-28 03:17:19 (49684): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-28 03:17:24 (49684): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-28 03:17:24 (49684): Guest Log: 00:00:00.000076 main     Log opened 2025-07-28T03:17:23.037974000Z
2025-07-28 03:17:24 (49684): Guest Log: 00:00:00.000174 main     OS Product: Linux
2025-07-28 03:17:24 (49684): Guest Log: 00:00:00.000205 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-28 03:17:24 (49684): Guest Log: 00:00:00.000225 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-28 03:17:24 (49684): Guest Log: 00:00:00.000243 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-28 03:17:24 (49684): Guest Log: 00:00:00.000243 main     Process ID: 1244
2025-07-28 03:17:24 (49684): Guest Log: 00:00:00.000243 main     Package type: LINUX_64BITS_GENERIC
2025-07-28 03:17:24 (49684): Guest Log: 00:00:00.000896 main     5.2.32 r132073 started. Verbose level = 0
2025-07-28 03:17:25 (49684): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-28 03:17:25 (49684): Guest Log: [INFO] Mounting shared directory
2025-07-28 03:17:25 (49684): Guest Log: [INFO] Checking for init_data.xml
2025-07-28 03:17:28 (49684): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-28 03:17:28 (49684): Guest Log: [INFO] Detected branch: prod
2025-07-28 03:17:28 (49684): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-28 03:17:28 (49684): Guest Log: Copying input files
2025-07-28 03:17:28 (49684): Guest Log: Copied input files into RunAtlas.
2025-07-28 03:17:28 (49684): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-07-28 03:17:34 (49684): Guest Log: 00:00:10.014101 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 625 282 000ns (GuestNow=1 753 665 454 421 845 000 ns GuestLast=1 753 672 643 047 127 000 ns fSetTimeLastLoop=true )
2025-07-28 03:17:36 (49684): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-28 03:17:36 (49684): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-28 03:17:36 (49684): Guest Log: 2.6.3.0 1513 0 31540 148830 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-07-28 03:17:36 (49684): Guest Log: copied the webapp to /var/www
2025-07-28 03:17:36 (49684): Guest Log: core_number=1
2025-07-28 03:17:36 (49684): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-28 03:17:36 (49684): Guest Log:  *** Starting ATLAS job. (PandaID=6747724667 taskID=45743349) ***
2025-07-28 04:57:15 (49684): Status Report: Elapsed Time: '6000.000000'
2025-07-28 04:57:15 (49684): Status Report: CPU Time: '5783.468750'
2025-07-28 06:37:17 (49684): Status Report: Elapsed Time: '12000.000000'
2025-07-28 06:37:17 (49684): Status Report: CPU Time: '11759.671875'
2025-07-28 08:17:20 (49684): Status Report: Elapsed Time: '18000.000000'
2025-07-28 08:17:20 (49684): Status Report: CPU Time: '17736.953125'
2025-07-28 09:57:23 (49684): Status Report: Elapsed Time: '24000.000000'
2025-07-28 09:57:23 (49684): Status Report: CPU Time: '23714.343750'
2025-07-28 09:59:25 (49684): VM state change detected. (old = 'running', new = 'paused')
2025-07-28 09:59:49 (49684): VM state change detected. (old = 'paused', new = 'running')
2025-07-28 11:07:27 (49684): Guest Log:  *** Job finished ***
2025-07-28 11:07:27 (49684): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:39,906 | INFO     | [data] queue_monitor thread has finished
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:45,492 | INFO     | job.realtimelogging is not enabled
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:46,493 | INFO     | [payload] run_realtimelog thread has finished
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:48,035 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139706422384448)>', '<ExcThread(monitor, started 139706108974848)>']
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:48,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:48,523 | INFO     | [monitor] control thread has ended
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,041 | INFO     | all workflow threads have been joined
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,041 | INFO     | end of generic workflow (traces error code: 0)
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,041 | INFO     | traces error code: 0
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,128 [wrapper] ==== pilot stdout END ====
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,130 [wrapper] ==== wrapper stdout RESUME ====
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,132 [wrapper] pilotpid: 5757
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,134 [wrapper] Pilot exit status: 0
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,204 [wrapper] pandaids: 6747724667
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,216 [wrapper] cleanup supervisor_pilot  5063 5758
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,218 [wrapper] Test setup, not cleaning
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,220 [wrapper] apfmon messages muted
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,221 [wrapper] ==== wrapper stdout END ====
2025-07-28 11:07:27 (49684): Guest Log: 2025-07-28 09:06:53,224 [wrapper] ==== wrapper stderr END ====
2025-07-28 11:07:27 (49684): Guest Log:  *** Error codes and diagnostics ***
2025-07-28 11:07:27 (49684): Guest Log:     "exeErrorCode": 0,
2025-07-28 11:07:27 (49684): Guest Log:     "exeErrorDiag": "",
2025-07-28 11:07:27 (49684): Guest Log:     "pilotErrorCode": 0,
2025-07-28 11:07:27 (49684): Guest Log:     "pilotErrorDiag": "",
2025-07-28 11:07:27 (49684): Guest Log:  *** Listing of results directory ***
2025-07-28 11:07:27 (49684): Guest Log: total 203016
2025-07-28 11:07:27 (49684): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 27 19:51 pilot3.tar.gz
2025-07-28 11:07:27 (49684): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 27 20:07 queuedata.json
2025-07-28 11:07:27 (49684): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 27 20:08 runpilot2-wrapper.sh
2025-07-28 11:07:27 (49684): Guest Log: -rwxr-xr-x. 1 atlas atlas      9450 Jul 28 01:17 init_data.xml
2025-07-28 11:07:27 (49684): Guest Log: -rwxr-xr-x. 1 atlas atlas    542900 Jul 28 01:17 input.tar.gz
2025-07-28 11:07:27 (49684): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 28 01:17 start_atlas.sh
2025-07-28 11:07:27 (49684): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 28 01:17 EVNT.45743347._002432.pool.root.1 -> /data/./ATLAS.root_0
2025-07-28 11:07:27 (49684): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 28 01:17 pandaJob.out
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 28 01:17 agis_schedconf.cvmfs.json
2025-07-28 11:07:27 (49684): Guest Log: drwx------. 4 atlas atlas      4096 Jul 28 01:17 pilot3
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas 198035364 Jul 28 09:06 HITS.45743349._055198.pool.root.1
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas        95 Jul 28 09:06 pilot_heartbeat.json
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas      1022 Jul 28 09:06 memory_monitor_summary.json
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 28 09:06 agis_ddmendpoints.agis.ALL.json
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas    402893 Jul 28 09:06 log.45743349._055198.job.log.tgz.1
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas      7771 Jul 28 09:06 heartbeat.json
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas      4612 Jul 28 09:06 pilotlog.txt
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas   2616511 Jul 28 09:06 log.45743349._055198.job.log.1
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas       357 Jul 28 09:06 output.list
2025-07-28 11:07:27 (49684): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 28 09:06 runtime_log
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas   3041280 Jul 28 09:06 result.tar.gz
2025-07-28 11:07:27 (49684): Guest Log: -rw-r--r--. 1 atlas atlas      8466 Jul 28 09:06 runtime_log.err
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas       657 Jul 28 09:06 HqbMDm3qM07n9Rq4apOajLDm4fhM0noT9bVof3QYDmr42KDmfsWWYm.diag
2025-07-28 11:07:27 (49684): Guest Log: Looking for outputfile HITS.45743349._055198.pool.root.1
2025-07-28 11:07:27 (49684): Guest Log: HITS file was successfully produced
2025-07-28 11:07:27 (49684): Guest Log: -rw-------. 1 atlas atlas 198035364 Jul 28 09:06 /home/atlas/RunAtlas/HITS.45743349._055198.pool.root.1
2025-07-28 11:07:28 (49684): Guest Log: Successfully finished the ATLAS job!
2025-07-28 11:07:28 (49684): Guest Log: Copying the results back to the shared directory!
2025-07-28 11:07:28 (49684): Guest Log:  *** Contents of shared directory: ***
2025-07-28 11:07:28 (49684): Guest Log: total 339296
2025-07-28 11:07:28 (49684): Guest Log: -rwxrwxrwx. 1 root root 145783729 Jul 28 01:17 ATLAS.root_0
2025-07-28 11:07:28 (49684): Guest Log: -rwxrwxrwx. 1 root root 198035364 Jul 28  2025 HITS.pool.root.1
2025-07-28 11:07:28 (49684): Guest Log: -rwxrwxrwx. 1 root root      9450 Jul 28 01:17 init_data.xml
2025-07-28 11:07:28 (49684): Guest Log: -rwxrwxrwx. 1 root root    542900 Jul 28 01:15 input.tar.gz
2025-07-28 11:07:28 (49684): Guest Log: -rwxrwxrwx. 1 root root   3041280 Jul 28  2025 result.tar.gz
2025-07-28 11:07:28 (49684): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 28 01:15 start_atlas.sh
2025-07-28 11:07:28 (49684): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-28 11:07:28 (49684): VM Completion File Detected.
2025-07-28 11:07:28 (49684): Powering off VM.
2025-07-28 11:07:28 (49684): Successfully stopped VM.
2025-07-28 11:07:28 (49684): Deregistering VM. (boinc_70bf59623b90363f, slot#2)
2025-07-28 11:07:28 (49684): Removing network bandwidth throttle group from VM.
2025-07-28 11:07:29 (49684): Removing VM from VirtualBox.
11:07:34 (49684): called boinc_finish(0)

</stderr_txt>
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