Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:23:37 (7428): wrapper (7.7.26015): starting
02:23:37 (7428): wrapper: running run_atlas (--nthreads 4)
[2025-07-28 02:23:37] Arguments: --nthreads 4
[2025-07-28 02:23:37] Threads: 4
[2025-07-28 02:23:37] Checking for CVMFS
[2025-07-28 02:23:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 02:24:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 02:24:05] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 02:24:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 02:24:06] 2.11.5.0 7657 0 23812 148830 3 1 3277235 4194304 0 130560 0 0 100.000 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2025-07-28 02:24:06] CVMFS is ok
[2025-07-28 02:24:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 02:24:06] Checking for apptainer binary...
[2025-07-28 02:24:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 02:24:06] Running /usr/bin/apptainer --version
[2025-07-28 02:24:06] apptainer version 1.0.3
[2025-07-28 02:24:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 02:24:06] TeeC19
[2025-07-28 02:24:06] apptainer works
[2025-07-28 02:24:06] Set ATHENA_PROC_NUMBER=4
[2025-07-28 02:24:06] Set ATHENA_CORE_NUMBER=4
[2025-07-28 02:24:06] Starting ATLAS job with PandaID=6747627366
[2025-07-28 02:24:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 07:36:02]  *** The last 200 lines of the pilot log: ***
[2025-07-28 07:36:02] 2025-07-28 06:35:27,336 | INFO     | executing command: lscpu
[2025-07-28 07:36:02] 2025-07-28 06:35:27,369 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 07:36:02] 2025-07-28 06:35:27,661 | INFO     | monitor loop #1381: job 0:6747627366 is in state 'finished'
[2025-07-28 07:36:02] 2025-07-28 06:35:27,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 07:36:02] 2025-07-28 06:35:28,467 | INFO     | PID=11664 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 07:36:02] 2025-07-28 06:35:29,826 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 07:36:02] 2025-07-28 06:35:29,828 | INFO     | found 2 cores (2 cores per socket, 1 socket) HT, CPU MHz: 3292.6454999999996
[2025-07-28 07:36:02] 2025-07-28 06:35:29,828 | INFO     | using path: /home/m/BOINC/slots/0/PanDA_Pilot-6747627366/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 07:36:02] 2025-07-28 06:35:29,829 | INFO     | extracted standard info from prmon json
[2025-07-28 07:36:02] 2025-07-28 06:35:29,829 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 07:36:02] 2025-07-28 06:35:29,829 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 07:36:02] 2025-07-28 06:35:29,830 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 07:36:02] 2025-07-28 06:35:29,830 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 07:36:02] 2025-07-28 06:35:29,835 | INFO     | fitting pss+swap vs Time
[2025-07-28 07:36:02] 2025-07-28 06:35:29,835 | INFO     | sum of square deviations: 8809145599.396759
[2025-07-28 07:36:02] 2025-07-28 06:35:29,838 | INFO     | sum of deviations: -81716209536.13443
[2025-07-28 07:36:02] 2025-07-28 06:35:29,838 | INFO     | mean x: 1753675238.7967212
[2025-07-28 07:36:02] 2025-07-28 06:35:29,838 | INFO     | mean y: 2382256.4655737705
[2025-07-28 07:36:02] 2025-07-28 06:35:29,838 | INFO     | -- intersect: 16269986379.350857
[2025-07-28 07:36:02] 2025-07-28 06:35:29,838 | INFO     | intersect: 16269986379.350857
[2025-07-28 07:36:02] 2025-07-28 06:35:29,839 | INFO     | chi2: 2.890418205948395
[2025-07-28 07:36:02] 2025-07-28 06:35:29,839 | INFO     | sum of square deviations: 8383127914.586688
[2025-07-28 07:36:02] 2025-07-28 06:35:29,841 | INFO     | sum of deviations: -62721398150.09336
[2025-07-28 07:36:02] 2025-07-28 06:35:29,841 | INFO     | mean x: 1753675086.2266667
[2025-07-28 07:36:02] 2025-07-28 06:35:29,841 | INFO     | mean y: 2388975.486666667
[2025-07-28 07:36:02] 2025-07-28 06:35:29,842 | INFO     | -- intersect: 13123142282.582664
[2025-07-28 07:36:02] 2025-07-28 06:35:29,842 | INFO     | intersect: 13123142282.582664
[2025-07-28 07:36:02] 2025-07-28 06:35:29,842 | INFO     | chi2: 2.242055672030017
[2025-07-28 07:36:02] 2025-07-28 06:35:29,842 | INFO     | current chi2=2.242055672030017 (change=22.4314437469314 %)
[2025-07-28 07:36:02] 2025-07-28 06:35:29,842 | INFO     | right removable region: 299
[2025-07-28 07:36:02] 2025-07-28 06:35:29,842 | INFO     | sum of square deviations: 8383165751.120006
[2025-07-28 07:36:02] 2025-07-28 06:35:29,844 | INFO     | sum of deviations: -128659032646.64014
[2025-07-28 07:36:02] 2025-07-28 06:35:29,844 | INFO     | mean x: 1753675391.36
[2025-07-28 07:36:02] 2025-07-28 06:35:29,844 | INFO     | mean y: 2398942.1633333336
[2025-07-28 07:36:02] 2025-07-28 06:35:29,844 | INFO     | -- intersect: 26916596528.970154
[2025-07-28 07:36:02] 2025-07-28 06:35:29,844 | INFO     | intersect: 26916596528.970154
[2025-07-28 07:36:02] 2025-07-28 06:35:29,844 | INFO     | chi2: 1.2634072053285448
[2025-07-28 07:36:02] 2025-07-28 06:35:29,845 | INFO     | current chi2=1.2634072053285448 (change=56.28981291605173 %)
[2025-07-28 07:36:02] 2025-07-28 06:35:29,845 | INFO     | sum of square deviations: 7971139650.359371
[2025-07-28 07:36:02] 2025-07-28 06:35:29,846 | INFO     | sum of deviations: -116325386792.2034
[2025-07-28 07:36:02] 2025-07-28 06:35:29,846 | INFO     | mean x: 1753675543.9254236
[2025-07-28 07:36:02] 2025-07-28 06:35:29,846 | INFO     | mean y: 2394364.627118644
[2025-07-28 07:36:02] 2025-07-28 06:35:29,847 | INFO     | -- intersect: 25594341677.450268
[2025-07-28 07:36:02] 2025-07-28 06:35:29,847 | INFO     | intersect: 25594341677.450268
[2025-07-28 07:36:02] 2025-07-28 06:35:29,847 | INFO     | chi2: 1.2439405561707635
[2025-07-28 07:36:02] 2025-07-28 06:35:29,847 | INFO     | current chi2=1.2439405561707635 (change=1.5408056148230573 %)
[2025-07-28 07:36:02] 2025-07-28 06:35:29,847 | INFO     | left removable region: 20
[2025-07-28 07:36:02] 2025-07-28 06:35:29,847 | INFO     | sum of square deviations: 6743729603.870981
[2025-07-28 07:36:02] 2025-07-28 06:35:29,849 | INFO     | sum of deviations: -66379516498.76345
[2025-07-28 07:36:02] 2025-07-28 06:35:29,849 | INFO     | mean x: 1753675665.9784946
[2025-07-28 07:36:02] 2025-07-28 06:35:29,849 | INFO     | mean y: 2389173.0394265233
[2025-07-28 07:36:02] 2025-07-28 06:35:29,849 | INFO     | -- intersect: 17264075160.045753
[2025-07-28 07:36:02] 2025-07-28 06:35:29,849 | INFO     | intersect: 17264075160.045753
[2025-07-28 07:36:02] 2025-07-28 06:35:29,849 | INFO     | chi2: 0.48081547109013156
[2025-07-28 07:36:02] 2025-07-28 06:35:29,849 | INFO     | -- intersect: 17264075160.045753
[2025-07-28 07:36:02] 2025-07-28 06:35:29,849 | INFO     | current memory leak: -9.84 B/s (using 279 data points, chi2=0.48)
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | could have reported an average CPU frequency of 3265 MHz (14 samples)
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | ..............................
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | . Timing measurements:
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | . get job = 0 s
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | . initial setup = 32 s
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | . payload setup = 10 s
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | . stage-in = 0 s
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | . payload execution = 18556 s
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | . stage-out = 2 s
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | . log creation = 0 s
[2025-07-28 07:36:02] 2025-07-28 06:35:29,850 | INFO     | ..............................
[2025-07-28 07:36:02] 2025-07-28 06:35:30,235 | INFO     | 
[2025-07-28 07:36:02] 2025-07-28 06:35:30,235 | INFO     | job summary report
[2025-07-28 07:36:02] 2025-07-28 06:35:30,235 | INFO     | --------------------------------------------------
[2025-07-28 07:36:02] 2025-07-28 06:35:30,235 | INFO     | PanDA job id: 6747627366
[2025-07-28 07:36:02] 2025-07-28 06:35:30,235 | INFO     | task id: 45743349
[2025-07-28 07:36:02] 2025-07-28 06:35:30,235 | INFO     | errors: (none)
[2025-07-28 07:36:02] 2025-07-28 06:35:30,236 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 07:36:02] 2025-07-28 06:35:30,236 | INFO     | pilot state: finished 
[2025-07-28 07:36:02] 2025-07-28 06:35:30,236 | INFO     | transexitcode: 0
[2025-07-28 07:36:02] 2025-07-28 06:35:30,236 | INFO     | exeerrorcode: 0
[2025-07-28 07:36:02] 2025-07-28 06:35:30,236 | INFO     | exeerrordiag: 
[2025-07-28 07:36:02] 2025-07-28 06:35:30,236 | INFO     | exitcode: 0
[2025-07-28 07:36:02] 2025-07-28 06:35:30,236 | INFO     | exitmsg: OK
[2025-07-28 07:36:02] 2025-07-28 06:35:30,237 | INFO     | cpuconsumptiontime: 71893 s
[2025-07-28 07:36:02] 2025-07-28 06:35:30,237 | INFO     | nevents: 400
[2025-07-28 07:36:02] 2025-07-28 06:35:30,237 | INFO     | neventsw: 0
[2025-07-28 07:36:02] 2025-07-28 06:35:30,237 | INFO     | pid: 18087
[2025-07-28 07:36:02] 2025-07-28 06:35:30,237 | INFO     | pgrp: 18087
[2025-07-28 07:36:02] 2025-07-28 06:35:30,237 | INFO     | corecount: 4
[2025-07-28 07:36:02] 2025-07-28 06:35:30,237 | INFO     | event service: False
[2025-07-28 07:36:02] 2025-07-28 06:35:30,237 | INFO     | sizes: {0: 2397474, 3: 2397736, 11: 2397764, 18571: 2430336, 18573: 2439332, 18576: 2439388, 18581: 2439710}
[2025-07-28 07:36:02] 2025-07-28 06:35:30,238 | INFO     | --------------------------------------------------
[2025-07-28 07:36:02] 2025-07-28 06:35:30,238 | INFO     | 
[2025-07-28 07:36:02] 2025-07-28 06:35:30,238 | INFO     | executing command: ls -lF /home/m/BOINC/slots/0
[2025-07-28 07:36:02] 2025-07-28 06:35:30,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,251 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,251 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,251 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,251 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,251 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,251 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,251 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,251 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,252 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,252 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,252 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 07:36:02] 2025-07-28 06:35:30,252 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,252 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 07:36:02] 2025-07-28 06:35:30,253 | INFO     | job 6747627366 has completed (purged errors)
[2025-07-28 07:36:02] 2025-07-28 06:35:30,253 | INFO     | overall cleanup function is called
[2025-07-28 07:36:02] 2025-07-28 06:35:31,259 | INFO     | --- collectZombieJob: --- 10, [18087]
[2025-07-28 07:36:02] 2025-07-28 06:35:31,259 | INFO     | zombie collector waiting for pid 18087
[2025-07-28 07:36:02] 2025-07-28 06:35:31,260 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 07:36:02] 2025-07-28 06:35:31,260 | INFO     | collected zombie processes
[2025-07-28 07:36:02] 2025-07-28 06:35:31,260 | INFO     | will attempt to kill all subprocesses of pid=18087
[2025-07-28 07:36:02] 2025-07-28 06:35:31,321 | INFO     | process IDs to be killed: [18087] (in reverse order)
[2025-07-28 07:36:02] 2025-07-28 06:35:31,348 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 07:36:02] 2025-07-28 06:35:31,348 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 07:36:02] 2025-07-28 06:35:31,350 | INFO     | did not find any defunct processes belonging to 18087
[2025-07-28 07:36:02] 2025-07-28 06:35:31,352 | INFO     | did not find any defunct processes belonging to 18087
[2025-07-28 07:36:02] 2025-07-28 06:35:31,352 | INFO     | ready for new job
[2025-07-28 07:36:02] 2025-07-28 06:35:31,352 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 07:36:02] 2025-07-28 06:35:31,353 | INFO     | ***************************************
[2025-07-28 07:36:02] 2025-07-28 06:35:31,353 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 07:36:02] 2025-07-28 06:35:31,353 | INFO     | ***************************************
[2025-07-28 07:36:02] 2025-07-28 06:35:31,353 | INFO     | 
[2025-07-28 07:36:02] 2025-07-28 06:35:31,374 | INFO     | architecture information:
[2025-07-28 07:36:02] 2025-07-28 06:35:31,374 | INFO     | executing command: cat /etc/os-release
[2025-07-28 07:36:02] 2025-07-28 06:35:31,384 | INFO     | cat /etc/os-release:
[2025-07-28 07:36:02] NAME="CentOS Linux"
[2025-07-28 07:36:02] VERSION="7 (Core)"
[2025-07-28 07:36:02] ID="centos"
[2025-07-28 07:36:02] ID_LIKE="rhel fedora"
[2025-07-28 07:36:02] VERSION_ID="7"
[2025-07-28 07:36:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 07:36:02] ANSI_COLOR="0;31"
[2025-07-28 07:36:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 07:36:02] HOME_URL="https://www.centos.org/"
[2025-07-28 07:36:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 07:36:02] 
[2025-07-28 07:36:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 07:36:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 07:36:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 07:36:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 07:36:02] 
[2025-07-28 07:36:02] 2025-07-28 06:35:31,384 | INFO     | ***************************************
[2025-07-28 07:36:02] 2025-07-28 06:35:31,887 | INFO     | executing command: df -mP /home/m/BOINC/slots/0
[2025-07-28 07:36:02] 2025-07-28 06:35:31,898 | INFO     | sufficient remaining disk space (272126443520 B)
[2025-07-28 07:36:02] 2025-07-28 06:35:31,898 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 07:36:02] 2025-07-28 06:35:31,898 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 07:36:02] 2025-07-28 06:35:31,899 | INFO     | update_server=False
[2025-07-28 07:36:02] 2025-07-28 06:35:31,899 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 07:36:02] 2025-07-28 06:35:31,899 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:36:02] 2025-07-28 06:35:31,899 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:36:02] 2025-07-28 06:35:31,900 | INFO     | aborting loop
[2025-07-28 07:36:02] 2025-07-28 06:35:32,283 | INFO     | all data control threads have been joined
[2025-07-28 07:36:02] 2025-07-28 06:35:32,345 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 07:36:02] 2025-07-28 06:35:32,617 | INFO     | all payload control threads have been joined
[2025-07-28 07:36:02] 2025-07-28 06:35:32,904 | INFO     | [job] retrieve thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:32,905 | INFO     | [job] queue monitor thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:32,905 | INFO     | [job] job monitor thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:32,948 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:32,992 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:32,992 | INFO     | [data] copytool_in thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:32,997 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:33,257 | INFO     | [payload] validate_post thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:33,288 | INFO     | [data] control thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:33,517 | INFO     | all job control threads have been joined
[2025-07-28 07:36:02] 2025-07-28 06:35:33,553 | INFO     | [payload] failed_post thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:33,623 | INFO     | [payload] control thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:33,911 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:34,030 | INFO     | [job] validate thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:34,351 | INFO     | [data] copytool_out thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:34,522 | INFO     | [job] control thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:34,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 07:36:02] 2025-07-28 06:35:38,911 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 07:36:02] 2025-07-28 06:35:41,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956843644736)>', '<ExcThread(monitor, started 139956374714112)>']
[2025-07-28 07:36:02] 2025-07-28 06:35:46,029 | INFO     | all workflow threads have been joined
[2025-07-28 07:36:02] 2025-07-28 06:35:46,029 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 07:36:02] 2025-07-28 06:35:46,030 | INFO     | traces error code: 0
[2025-07-28 07:36:02] 2025-07-28 06:35:46,030 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 07:36:02] 2025-07-28 06:36:02,608 | INFO     | PID=11664 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 07:36:02] 2025-07-28 06:36:02,609 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 07:36:02] 2025-07-28 06:36:02,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 07:36:02] 2025-07-28 06:36:02,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 07:36:02] 2025-07-28 06:36:02,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 07:36:02] 2025-07-28 06:36:02,609 | INFO     | [monitor] control thread has ended
[2025-07-28 07:36:02] 2025-07-28 06:36:02,706 [wrapper] ==== pilot stdout END ====
[2025-07-28 07:36:02] 2025-07-28 06:36:02,708 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 07:36:02] 2025-07-28 06:36:02,711 [wrapper] pilotpid: 11664
[2025-07-28 07:36:02] 2025-07-28 06:36:02,713 [wrapper] Pilot exit status: 0
[2025-07-28 07:36:02] 2025-07-28 06:36:02,723 [wrapper] pandaids: 6747627366
[2025-07-28 07:36:02] 2025-07-28 06:36:02,741 [wrapper] cleanup supervisor_pilot 15646 11665
[2025-07-28 07:36:02] 2025-07-28 06:36:02,743 [wrapper] Test setup, not cleaning
[2025-07-28 07:36:02] 2025-07-28 06:36:02,746 [wrapper] apfmon messages muted
[2025-07-28 07:36:02] 2025-07-28 06:36:02,748 [wrapper] ==== wrapper stdout END ====
[2025-07-28 07:36:02] 2025-07-28 06:36:02,750 [wrapper] ==== wrapper stderr END ====
[2025-07-28 07:36:02]  *** Error codes and diagnostics ***
[2025-07-28 07:36:02]     "exeErrorCode": 0,
[2025-07-28 07:36:02]     "exeErrorDiag": "",
[2025-07-28 07:36:02]     "pilotErrorCode": 0,
[2025-07-28 07:36:02]     "pilotErrorDiag": "",
[2025-07-28 07:36:02]  *** Listing of results directory ***
[2025-07-28 07:36:02] total 352868
[2025-07-28 07:36:02] -rw-r--r-- 1 m m    530466 Jul 27 20:51 pilot3.tar.gz
[2025-07-28 07:36:02] -rwx------ 1 m m     36292 Jul 27 20:52 runpilot2-wrapper.sh
[2025-07-28 07:36:02] -rw-r--r-- 1 m m      5112 Jul 27 20:52 queuedata.json
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m       100 Jul 28 02:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 07:36:02] -rwxr-xr-x 1 m m      7986 Jul 28 02:23 run_atlas
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m       105 Jul 28 02:23 job.xml
[2025-07-28 07:36:02] -rw-r--r-- 2 m m     15095 Jul 28 02:23 start_atlas.sh
[2025-07-28 07:36:02] drwxrwx--x 2 m m      4096 Jul 28 02:23 shared
[2025-07-28 07:36:02] -rw-r--r-- 2 m m    542893 Jul 28 02:23 input.tar.gz
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m      5777 Jul 28 02:23 init_data.xml
[2025-07-28 07:36:02] -rw-r--r-- 2 m m 142571978 Jul 28 02:23 EVNT.45743347._002980.pool.root.1
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m         0 Jul 28 02:23 boinc_lockfile
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m      2563 Jul 28 02:24 pandaJob.out
[2025-07-28 07:36:02] -rw------- 1 m m    980125 Jul 28 02:25 agis_schedconf.cvmfs.json
[2025-07-28 07:36:02] -rw------- 1 m m   1326295 Jul 28 02:25 cric_ddmendpoints.json
[2025-07-28 07:36:02] drwx------ 4 m m      4096 Jul 28 02:25 pilot3
[2025-07-28 07:36:02] -rw------- 1 m m 209515233 Jul 28 07:34 HITS.45743349._054916.pool.root.1
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m       530 Jul 28 07:34 boinc_task_state.xml
[2025-07-28 07:36:02] -rw------- 1 m m        95 Jul 28 07:35 pilot_heartbeat.json
[2025-07-28 07:36:02] -rw------- 1 m m      1029 Jul 28 07:35 memory_monitor_summary.json
[2025-07-28 07:36:02] -rw------- 1 m m   1593052 Jul 28 07:35 agis_ddmendpoints.agis.ALL.json
[2025-07-28 07:36:02] -rw------- 1 m m    371181 Jul 28 07:35 log.45743349._054916.job.log.tgz.1
[2025-07-28 07:36:02] -rw------- 1 m m      7790 Jul 28 07:35 heartbeat.json
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m        28 Jul 28 07:35 wrapper_checkpoint.txt
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m      8192 Jul 28 07:35 boinc_mmap_file
[2025-07-28 07:36:02] -rw------- 1 m m       745 Jul 28 07:36 pilotlog.txt
[2025-07-28 07:36:02] -rw------- 1 m m   1651459 Jul 28 07:36 log.45743349._054916.job.log.1
[2025-07-28 07:36:02] -rw------- 1 m m       357 Jul 28 07:36 output.list
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m       620 Jul 28 07:36 runtime_log
[2025-07-28 07:36:02] -rw------- 1 m m   2037760 Jul 28 07:36 result.tar.gz
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m      8575 Jul 28 07:36 runtime_log.err
[2025-07-28 07:36:02] -rw------- 1 m m       645 Jul 28 07:36 BvJNDm3aM07n9Rq4apOajLDm4fhM0noT9bVof3QYDmo22KDmQWXiwm.diag
[2025-07-28 07:36:02] -rw-rw-r-- 1 m m     21024 Jul 28 07:36 stderr.txt
[2025-07-28 07:36:02] HITS file was successfully produced:
[2025-07-28 07:36:02] -rw------- 1 m m 209515233 Jul 28 07:34 shared/HITS.pool.root.1
[2025-07-28 07:36:02]  *** Contents of shared directory: ***
[2025-07-28 07:36:02] total 346388
[2025-07-28 07:36:02] -rw-r--r-- 2 m m     15095 Jul 28 02:23 start_atlas.sh
[2025-07-28 07:36:02] -rw-r--r-- 2 m m    542893 Jul 28 02:23 input.tar.gz
[2025-07-28 07:36:02] -rw-r--r-- 2 m m 142571978 Jul 28 02:23 ATLAS.root_0
[2025-07-28 07:36:02] -rw------- 1 m m 209515233 Jul 28 07:34 HITS.pool.root.1
[2025-07-28 07:36:02] -rw------- 1 m m   2037760 Jul 28 07:36 result.tar.gz
07:36:04 (7428): run_atlas exited; CPU time 72156.608375
07:36:04 (7428): called boinc_finish(0)

</stderr_txt>
]]>

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