Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:41:05 (692279): wrapper (7.7.26015): starting
03:41:05 (692279): wrapper: running run_atlas (--nthreads 6)
[2025-07-29 03:41:05] Arguments: --nthreads 6
[2025-07-29 03:41:05] Threads: 6
[2025-07-29 03:41:05] Checking for CVMFS
[2025-07-29 03:41:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 03:41:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 03:41:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 03:41:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 03:41:06] 2.13.1.0 77746 9860 84388 148859 3 57 44252985 52428800 922 130560 0 12610920 99.994 349551 166 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-29 03:41:06] CVMFS is ok
[2025-07-29 03:41:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 03:41:06] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-29 03:41:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-29 03:41:06] Further information can be found at the LHC@home message board.
[2025-07-29 03:41:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 03:41:06] Checking for apptainer binary...
[2025-07-29 03:41:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-29 03:41:06] Running /usr/bin/apptainer --version
[2025-07-29 03:41:06] apptainer version 1.4.1-1.el9
[2025-07-29 03:41:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 03:41:06] Atto003
[2025-07-29 03:41:06] apptainer works
[2025-07-29 03:41:06] Set ATHENA_PROC_NUMBER=6
[2025-07-29 03:41:06] Set ATHENA_CORE_NUMBER=6
[2025-07-29 03:41:06] Starting ATLAS job with PandaID=6747627389
[2025-07-29 03:41:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 05:37:34]  *** The last 200 lines of the pilot log: ***
[2025-07-29 05:37:34] 2025-07-28 20:37:03,143 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,143 | INFO     | mean y: 2446070.50877193
[2025-07-29 05:37:34] 2025-07-28 20:37:03,143 | INFO     | -- intersect: -51939558692.97035
[2025-07-29 05:37:34] 2025-07-28 20:37:03,143 | INFO     | intersect: -51939558692.97035
[2025-07-29 05:37:34] 2025-07-28 20:37:03,144 | INFO     | chi2: 4.855086214313129
[2025-07-29 05:37:34] 2025-07-28 20:37:03,144 | INFO     | sum of square deviations: 401533110.0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,144 | INFO     | sum of deviations: 20717479044.0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,144 | INFO     | mean x: 1753731389.0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,145 | INFO     | mean y: 2464180.651376147
[2025-07-29 05:37:34] 2025-07-28 20:37:03,145 | INFO     | -- intersect: -90482958803.30258
[2025-07-29 05:37:34] 2025-07-28 20:37:03,145 | INFO     | intersect: -90482958803.30258
[2025-07-29 05:37:34] 2025-07-28 20:37:03,145 | INFO     | chi2: 4.207535322586017
[2025-07-29 05:37:34] 2025-07-28 20:37:03,145 | INFO     | current chi2=4.207535322586017 (change=13.337577607130596 %)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,145 | INFO     | right removable region: 108
[2025-07-29 05:37:34] 2025-07-28 20:37:03,146 | INFO     | sum of square deviations: 401533110.0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,146 | INFO     | sum of deviations: -12039299526.0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,146 | INFO     | mean x: 1753731694.0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,146 | INFO     | mean y: 2513326.009174312
[2025-07-29 05:37:34] 2025-07-28 20:37:03,146 | INFO     | -- intersect: 52585228490.657425
[2025-07-29 05:37:34] 2025-07-28 20:37:03,147 | INFO     | intersect: 52585228490.657425
[2025-07-29 05:37:34] 2025-07-28 20:37:03,147 | INFO     | chi2: 2.3828294408118746
[2025-07-29 05:37:34] 2025-07-28 20:37:03,147 | INFO     | current chi2=2.3828294408118746 (change=50.92096544470973 %)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,147 | INFO     | sum of square deviations: 348769330.0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,148 | INFO     | sum of deviations: -30266625193.499996
[2025-07-29 05:37:34] 2025-07-28 20:37:03,148 | INFO     | mean x: 1753731846.5
[2025-07-29 05:37:34] 2025-07-28 20:37:03,148 | INFO     | mean y: 2566031.2596153845
[2025-07-29 05:37:34] 2025-07-28 20:37:03,148 | INFO     | -- intersect: 152193541332.67206
[2025-07-29 05:37:34] 2025-07-28 20:37:03,148 | INFO     | intersect: 152193541332.67206
[2025-07-29 05:37:34] 2025-07-28 20:37:03,148 | INFO     | chi2: 1.1182324419168523
[2025-07-29 05:37:34] 2025-07-28 20:37:03,149 | INFO     | current chi2=1.1182324419168523 (change=53.07123444236741 %)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,149 | INFO     | sum of square deviations: 300842850.0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,149 | INFO     | sum of deviations: -33018142159.0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,149 | INFO     | size of work directory /var/lib/boinc/slots/1/PanDA_Pilot-6747627389: 2960583 B (within 2537553920 B limit)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,149 | INFO     | mean x: 1753731999.0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,150 | INFO     | mean y: 2574222.9191919193
[2025-07-29 05:37:34] 2025-07-28 20:37:03,150 | INFO     | pfn file=/var/lib/boinc/slots/1/PanDA_Pilot-6747627389/HITS.45743349._054939.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,150 | INFO     | -- intersect: 192478388262.6055
[2025-07-29 05:37:34] 2025-07-28 20:37:03,150 | INFO     | total size of present files: 0 B (workdir size: 2960583 B)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,150 | INFO     | intersect: 192478388262.6055
[2025-07-29 05:37:34] 2025-07-28 20:37:03,150 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-6747627389/HITS.45743349._054939.pool.root.1 since it does not exist
[2025-07-29 05:37:34] 2025-07-28 20:37:03,150 | INFO     | chi2: 0.8717347845666198
[2025-07-29 05:37:34] 2025-07-28 20:37:03,151 | INFO     | current chi2=0.8717347845666198 (change=22.043507960446135 %)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,151 | INFO     | left removable region: 30
[2025-07-29 05:37:34] 2025-07-28 20:37:03,151 | INFO     | sum of square deviations: 147126479.5
[2025-07-29 05:37:34] 2025-07-28 20:37:03,151 | INFO     | sum of deviations: -14465652209.5
[2025-07-29 05:37:34] 2025-07-28 20:37:03,151 | INFO     | mean x: 1753732273.5
[2025-07-29 05:37:34] 2025-07-28 20:37:03,151 | INFO     | mean y: 2558197.782051282
[2025-07-29 05:37:34] 2025-07-28 20:37:03,152 | INFO     | -- intersect: 172431622110.9625
[2025-07-29 05:37:34] 2025-07-28 20:37:03,152 | INFO     | intersect: 172431622110.9625
[2025-07-29 05:37:34] 2025-07-28 20:37:03,152 | INFO     | chi2: 0.16226336347471076
[2025-07-29 05:37:34] 2025-07-28 20:37:03,152 | INFO     | -- intersect: 172431622110.9625
[2025-07-29 05:37:34] 2025-07-28 20:37:03,152 | INFO     | current memory leak: -98.32 B/s (using 78 data points, chi2=0.16)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,152 | INFO     | could have reported an average CPU frequency of 3428 MHz (7 samples)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,152 | INFO     | ..............................
[2025-07-29 05:37:34] 2025-07-28 20:37:03,153 | INFO     | . Timing measurements:
[2025-07-29 05:37:34] 2025-07-28 20:37:03,153 | INFO     | . get job = 0 s
[2025-07-29 05:37:34] 2025-07-28 20:37:03,153 | INFO     | . initial setup = 5 s
[2025-07-29 05:37:34] 2025-07-28 20:37:03,153 | INFO     | . payload setup = 3 s
[2025-07-29 05:37:34] 2025-07-28 20:37:03,153 | INFO     | . stage-in = 0 s
[2025-07-29 05:37:34] 2025-07-28 20:37:03,153 | INFO     | . payload execution = 6911 s
[2025-07-29 05:37:34] 2025-07-28 20:37:03,153 | INFO     | . stage-out = 0 s
[2025-07-29 05:37:34] 2025-07-28 20:37:03,153 | INFO     | . log creation = 0 s
[2025-07-29 05:37:34] 2025-07-28 20:37:03,153 | INFO     | ..............................
[2025-07-29 05:37:34] 2025-07-28 20:37:03,229 | INFO     | 
[2025-07-29 05:37:34] 2025-07-28 20:37:03,229 | INFO     | job summary report
[2025-07-29 05:37:34] 2025-07-28 20:37:03,229 | INFO     | --------------------------------------------------
[2025-07-29 05:37:34] 2025-07-28 20:37:03,229 | INFO     | PanDA job id: 6747627389
[2025-07-29 05:37:34] 2025-07-28 20:37:03,229 | INFO     | task id: 45743349
[2025-07-29 05:37:34] 2025-07-28 20:37:03,230 | INFO     | errors: (none)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,230 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 05:37:34] 2025-07-28 20:37:03,230 | INFO     | pilot state: finished 
[2025-07-29 05:37:34] 2025-07-28 20:37:03,230 | INFO     | transexitcode: 0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,230 | INFO     | exeerrorcode: 0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,230 | INFO     | exeerrordiag: 
[2025-07-29 05:37:34] 2025-07-28 20:37:03,230 | INFO     | exitcode: 0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,230 | INFO     | exitmsg: OK
[2025-07-29 05:37:34] 2025-07-28 20:37:03,231 | INFO     | cpuconsumptiontime: 36595 s
[2025-07-29 05:37:34] 2025-07-28 20:37:03,231 | INFO     | nevents: 400
[2025-07-29 05:37:34] 2025-07-28 20:37:03,231 | INFO     | neventsw: 0
[2025-07-29 05:37:34] 2025-07-28 20:37:03,231 | INFO     | pid: 702552
[2025-07-29 05:37:34] 2025-07-28 20:37:03,231 | INFO     | pgrp: 702552
[2025-07-29 05:37:34] 2025-07-28 20:37:03,231 | INFO     | corecount: 6
[2025-07-29 05:37:34] 2025-07-28 20:37:03,231 | INFO     | event service: False
[2025-07-29 05:37:34] 2025-07-28 20:37:03,231 | INFO     | sizes: {0: 2391687, 1: 2391886, 3: 2392148, 11: 2392176, 6918: 2419462, 6919: 2428460, 6922: 2428644, 6934: 2428866}
[2025-07-29 05:37:34] 2025-07-28 20:37:03,231 | INFO     | --------------------------------------------------
[2025-07-29 05:37:34] 2025-07-28 20:37:03,232 | INFO     | 
[2025-07-29 05:37:34] 2025-07-28 20:37:03,232 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-07-29 05:37:34] 2025-07-28 20:37:03,244 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,244 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,244 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,245 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,245 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,245 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,245 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,245 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,245 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,245 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,245 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,245 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,246 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,246 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,246 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,246 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,246 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,246 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,246 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,246 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 05:37:34] 2025-07-28 20:37:03,246 | INFO     | job 6747627389 has completed (purged errors)
[2025-07-29 05:37:34] 2025-07-28 20:37:03,247 | INFO     | overall cleanup function is called
[2025-07-29 05:37:34] 2025-07-28 20:37:03,325 | INFO     | number of running child processes to parent process 702552: 1
[2025-07-29 05:37:34] 2025-07-28 20:37:03,325 | INFO     | maximum number of monitored processes: 6
[2025-07-29 05:37:34] 2025-07-28 20:37:03,325 | INFO     | aborting job monitoring since job object (job id=6747627389) has expired
[2025-07-29 05:37:34] 2025-07-28 20:37:04,254 | INFO     | --- collectZombieJob: --- 10, [702552]
[2025-07-29 05:37:34] 2025-07-28 20:37:04,254 | INFO     | zombie collector waiting for pid 702552
[2025-07-29 05:37:34] 2025-07-28 20:37:04,254 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 05:37:34] 2025-07-28 20:37:04,254 | INFO     | collected zombie processes
[2025-07-29 05:37:34] 2025-07-28 20:37:04,254 | INFO     | will attempt to kill all subprocesses of pid=702552
[2025-07-29 05:37:34] 2025-07-28 20:37:04,344 | INFO     | process IDs to be killed: [702552] (in reverse order)
[2025-07-29 05:37:34] 2025-07-28 20:37:04,377 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 05:37:34] 2025-07-28 20:37:04,378 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 05:37:34] 2025-07-28 20:37:04,380 | INFO     | did not find any defunct processes belonging to 702552
[2025-07-29 05:37:34] 2025-07-28 20:37:04,382 | INFO     | did not find any defunct processes belonging to 702552
[2025-07-29 05:37:34] 2025-07-28 20:37:04,383 | INFO     | ready for new job
[2025-07-29 05:37:34] 2025-07-28 20:37:04,383 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 05:37:34] 2025-07-28 20:37:04,384 | INFO     | ***************************************
[2025-07-29 05:37:34] 2025-07-28 20:37:04,384 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 05:37:34] 2025-07-28 20:37:04,384 | INFO     | ***************************************
[2025-07-29 05:37:34] 2025-07-28 20:37:04,384 | INFO     | 
[2025-07-29 05:37:34] 2025-07-28 20:37:04,385 | INFO     | architecture information:
[2025-07-29 05:37:34] 2025-07-28 20:37:04,385 | INFO     | executing command: cat /etc/os-release
[2025-07-29 05:37:34] 2025-07-28 20:37:04,393 | INFO     | cat /etc/os-release:
[2025-07-29 05:37:34] NAME="CentOS Linux"
[2025-07-29 05:37:34] VERSION="7 (Core)"
[2025-07-29 05:37:34] ID="centos"
[2025-07-29 05:37:34] ID_LIKE="rhel fedora"
[2025-07-29 05:37:34] VERSION_ID="7"
[2025-07-29 05:37:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 05:37:34] ANSI_COLOR="0;31"
[2025-07-29 05:37:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 05:37:34] HOME_URL="https://www.centos.org/"
[2025-07-29 05:37:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 05:37:34] 
[2025-07-29 05:37:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 05:37:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 05:37:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 05:37:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 05:37:34] 
[2025-07-29 05:37:34] 2025-07-28 20:37:04,394 | INFO     | ***************************************
[2025-07-29 05:37:34] 2025-07-28 20:37:04,896 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-07-29 05:37:34] 2025-07-28 20:37:04,908 | INFO     | sufficient remaining disk space (100856233984 B)
[2025-07-29 05:37:34] 2025-07-28 20:37:04,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 05:37:34] 2025-07-28 20:37:04,908 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 05:37:34] 2025-07-28 20:37:04,908 | INFO     | update_server=False
[2025-07-29 05:37:34] 2025-07-28 20:37:04,908 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 05:37:34] 2025-07-28 20:37:04,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 05:37:34] 2025-07-28 20:37:04,909 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 05:37:34] 2025-07-28 20:37:04,909 | INFO     | aborting loop
[2025-07-29 05:37:34] 2025-07-28 20:37:05,849 | INFO     | all data control threads have been joined
[2025-07-29 05:37:34] 2025-07-28 20:37:05,913 | INFO     | [job] queue monitor thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:05,914 | INFO     | [job] job monitor thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:05,914 | INFO     | [job] retrieve thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:05,962 | INFO     | [payload] validate_post thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:06,147 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 05:37:34] 2025-07-28 20:37:06,246 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 05:37:34] 2025-07-28 20:37:06,297 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:06,351 | INFO     | all job control threads have been joined
[2025-07-29 05:37:34] 2025-07-28 20:37:06,370 | INFO     | all payload control threads have been joined
[2025-07-29 05:37:34] 2025-07-28 20:37:06,843 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:06,854 | INFO     | [data] control thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:06,874 | INFO     | [payload] failed_post thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:06,956 | INFO     | [data] copytool_in thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:07,082 | INFO     | [job] validate thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:07,264 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:07,356 | INFO     | [job] control thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:07,374 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:07,375 | INFO     | [payload] control thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:08,251 | INFO     | [data] copytool_out thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:10,153 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 05:37:34] 2025-07-28 20:37:11,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033198827328)>', '<ExcThread(monitor, started 140032551667456)>']
[2025-07-29 05:37:34] 2025-07-28 20:37:16,385 | INFO     | all workflow threads have been joined
[2025-07-29 05:37:34] 2025-07-28 20:37:16,385 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 05:37:34] 2025-07-28 20:37:16,385 | INFO     | traces error code: 0
[2025-07-29 05:37:34] 2025-07-28 20:37:16,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 05:37:34] 2025-07-28 20:37:34,533 | INFO     | PID=695999 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-29 05:37:34] 2025-07-28 20:37:34,539 | INFO     | .. there are 2 such processes running
[2025-07-29 05:37:34] 2025-07-28 20:37:34,539 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 05:37:34] 2025-07-28 20:37:34,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 05:37:34] 2025-07-28 20:37:34,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 05:37:34] 2025-07-28 20:37:34,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 05:37:34] 2025-07-28 20:37:34,540 | INFO     | [monitor] control thread has ended
[2025-07-29 05:37:34] 2025-07-28 20:37:34,608 [wrapper] ==== pilot stdout END ====
[2025-07-29 05:37:34] 2025-07-28 20:37:34,609 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 05:37:34] 2025-07-28 20:37:34,610 [wrapper] pilotpid: 695999
[2025-07-29 05:37:34] 2025-07-28 20:37:34,612 [wrapper] Pilot exit status: 0
[2025-07-29 05:37:34] 2025-07-28 20:37:34,617 [wrapper] pandaids: 6747627389
[2025-07-29 05:37:34] 2025-07-28 20:37:34,636 [wrapper] cleanup supervisor_pilot  745158 696000
[2025-07-29 05:37:34] 2025-07-28 20:37:34,637 [wrapper] Test setup, not cleaning
[2025-07-29 05:37:34] 2025-07-28 20:37:34,639 [wrapper] apfmon messages muted
[2025-07-29 05:37:34] 2025-07-28 20:37:34,640 [wrapper] ==== wrapper stdout END ====
[2025-07-29 05:37:34] 2025-07-28 20:37:34,642 [wrapper] ==== wrapper stderr END ====
[2025-07-29 05:37:34]  *** Error codes and diagnostics ***
[2025-07-29 05:37:34]     "exeErrorCode": 0,
[2025-07-29 05:37:34]     "exeErrorDiag": "",
[2025-07-29 05:37:34]     "pilotErrorCode": 0,
[2025-07-29 05:37:34]     "pilotErrorDiag": "",
[2025-07-29 05:37:34]  *** Listing of results directory ***
[2025-07-29 05:37:34] total 341896
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc    530466 Jul 28 04:51 pilot3.tar.gz
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc      5112 Jul 28 04:52 queuedata.json
[2025-07-29 05:37:34] -rwx------. 1 boinc boinc     36292 Jul 28 04:53 runpilot2-wrapper.sh
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc       100 Jul 29 03:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 05:37:34] -rwxr-xr-x. 1 boinc boinc      7986 Jul 29 03:41 run_atlas
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc       105 Jul 29 03:41 job.xml
[2025-07-29 05:37:34] -rw-r--r--. 2 boinc boinc     15095 Jul 29 03:41 start_atlas.sh
[2025-07-29 05:37:34] drwxrwx--x. 2 boinc boinc        68 Jul 29 03:41 shared
[2025-07-29 05:37:34] -rw-r--r--. 2 boinc boinc    542892 Jul 29 03:41 input.tar.gz
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc      9345 Jul 29 03:41 init_data.xml
[2025-07-29 05:37:34] -rw-r--r--. 2 boinc boinc 144688746 Jul 29 03:41 EVNT.45743347._002982.pool.root.1
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc         0 Jul 29 03:41 boinc_lockfile
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc      2562 Jul 29 03:41 pandaJob.out
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc    977348 Jul 29 03:41 agis_schedconf.cvmfs.json
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc   1589827 Jul 29 03:41 agis_ddmendpoints.agis.ALL.json
[2025-07-29 05:37:34] drwx------. 4 boinc boinc      4096 Jul 29 03:41 pilot3
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc 199619277 Jul 29 05:36 HITS.45743349._054939.pool.root.1
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc      1017 Jul 29 05:36 memory_monitor_summary.json
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc       529 Jul 29 05:36 boinc_task_state.xml
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc    289504 Jul 29 05:36 log.45743349._054939.job.log.tgz.1
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc      7771 Jul 29 05:37 heartbeat.json
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc      8192 Jul 29 05:37 boinc_mmap_file
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc        27 Jul 29 05:37 wrapper_checkpoint.txt
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc        95 Jul 29 05:37 pilot_heartbeat.json
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc       821 Jul 29 05:37 pilotlog.txt
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc    673840 Jul 29 05:37 log.45743349._054939.job.log.1
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc       357 Jul 29 05:37 output.list
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc       620 Jul 29 05:37 runtime_log
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc    983040 Jul 29 05:37 result.tar.gz
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc      8608 Jul 29 05:37 runtime_log.err
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc       640 Jul 29 05:37 30zLDmybM07n9Rq4apOajLDm4fhM0noT9bVof3QYDmt22KDm4v1Ldn.diag
[2025-07-29 05:37:34] -rw-r--r--. 1 boinc boinc     21362 Jul 29 05:37 stderr.txt
[2025-07-29 05:37:34] HITS file was successfully produced:
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc 199619277 Jul 29 05:36 shared/HITS.pool.root.1
[2025-07-29 05:37:34]  *** Contents of shared directory: ***
[2025-07-29 05:37:34] total 337756
[2025-07-29 05:37:34] -rw-r--r--. 2 boinc boinc     15095 Jul 29 03:41 start_atlas.sh
[2025-07-29 05:37:34] -rw-r--r--. 2 boinc boinc    542892 Jul 29 03:41 input.tar.gz
[2025-07-29 05:37:34] -rw-r--r--. 2 boinc boinc 144688746 Jul 29 03:41 ATLAS.root_0
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc 199619277 Jul 29 05:36 HITS.pool.root.1
[2025-07-29 05:37:34] -rw-------. 1 boinc boinc    983040 Jul 29 05:37 result.tar.gz
05:37:36 (692279): run_atlas exited; CPU time 36679.723789
05:37:36 (692279): called boinc_finish(0)

</stderr_txt>
]]>

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