Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:07:21 (634163): wrapper (7.7.26015): starting
21:07:21 (634163): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 21:07:21] Arguments: --nthreads 8
[2025-07-27 21:07:21] Threads: 8
[2025-07-27 21:07:21] Checking for CVMFS
[2025-07-27 21:07:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 21:07:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 21:07:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 21:07:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 21:07:22] 2.12.6.0 3144059 19122 361732 148829 0 726 33302569 40960000 10836 16776704 0 62016844 99.753 78203519 28008 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 21:07:22] CVMFS is ok
[2025-07-27 21:07:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 21:07:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 21:07:22] Further information can be found at the LHC@home message board.
[2025-07-27 21:07:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:07:22] Checking for apptainer binary...
[2025-07-27 21:07:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 21:07:22] Running /usr/bin/apptainer --version
[2025-07-27 21:07:22] apptainer version 1.4.1-1.el9
[2025-07-27 21:07:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:07:22] c7-11-15.aglt2.org
[2025-07-27 21:07:22] apptainer works
[2025-07-27 21:07:22] Set ATHENA_PROC_NUMBER=8
[2025-07-27 21:07:22] Set ATHENA_CORE_NUMBER=8
[2025-07-27 21:07:22] Starting ATLAS job with PandaID=6747525569
[2025-07-27 21:07:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:39:53]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:39:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747525569/log.45743349._052116.job.log.tgz.1
[2025-07-27 22:39:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e1/e1/log.45743349._052116.job.log.tgz.1
[2025-07-27 22:39:53]  workdir=None
[2025-07-27 22:39:53] ]
[2025-07-27 22:39:53] 2025-07-28 02:39:15,406 | INFO     | transferring file log.45743349._052116.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747525569/log.45743349._052116.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:39:53] 2025-07-28 02:39:15,406 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747525569/log.45743349._052116.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._052116.job
[2025-07-27 22:39:53] 2025-07-28 02:39:15,431 | INFO     | adding to output.list: log.45743349._052116.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e1/e1/log.45743349._052116.job.log.tg
[2025-07-27 22:39:53] 2025-07-28 02:39:15,431 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:39:53] 2025-07-28 02:39:15,431 | INFO     | summary of transferred files:
[2025-07-27 22:39:53] 2025-07-28 02:39:15,431 | INFO     |  -- lfn=log.45743349._052116.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:39:53] 2025-07-28 02:39:15,432 | INFO     | stage-out finished correctly
[2025-07-27 22:39:53] 2025-07-28 02:39:15,638 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:39:53] 2025-07-28 02:39:16,806 | INFO     | job 6747525569 has state=finished
[2025-07-27 22:39:53] 2025-07-28 02:39:16,807 | INFO     | preparing for final server update for job 6747525569 in state='finished'
[2025-07-27 22:39:53] 2025-07-28 02:39:16,807 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:39:53] 2025-07-28 02:39:16,807 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:39:53] 2025-07-28 02:39:16,807 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:39:53] 2025-07-28 02:39:16,807 | INFO     | job 6747525569 has finished - writing final server update
[2025-07-27 22:39:53] 2025-07-28 02:39:16,808 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:39:53] 2025-07-28 02:39:16,808 | INFO     | executing command: lscpu
[2025-07-27 22:39:53] 2025-07-28 02:39:16,867 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:39:53] 2025-07-28 02:39:18,144 | WARNING  | process 644872 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 22:39:53] 2025-07-28 02:39:18,144 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747525569/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:39:53] 2025-07-28 02:39:18,146 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747525569/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:39:53] 2025-07-28 02:39:18,147 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3338458 B
[2025-07-27 22:39:53] 2025-07-28 02:39:18,147 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15781 B
[2025-07-27 22:39:53] 2025-07-28 02:39:18,147 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:39:53] 2025-07-28 02:39:21,698 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 22:39:53] 2025-07-28 02:39:21,707 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3265.8019218750014
[2025-07-27 22:39:53] 2025-07-28 02:39:21,718 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747525569/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,718 | INFO     | extracted standard info from prmon json
[2025-07-27 22:39:53] 2025-07-28 02:39:21,718 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:39:53] 2025-07-28 02:39:21,718 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:39:53] 2025-07-28 02:39:21,719 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:39:53] 2025-07-28 02:39:21,719 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:39:53] 2025-07-28 02:39:21,720 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:39:53] 2025-07-28 02:39:21,721 | INFO     | sum of square deviations: 177275882.0
[2025-07-27 22:39:53] 2025-07-28 02:39:21,721 | INFO     | sum of deviations: -308096543.0
[2025-07-27 22:39:53] 2025-07-28 02:39:21,721 | INFO     | mean x: 1753667703.0
[2025-07-27 22:39:53] 2025-07-28 02:39:21,721 | INFO     | mean y: 2180746.2409638553
[2025-07-27 22:39:53] 2025-07-28 02:39:21,721 | INFO     | -- intersect: 3049966777.6485004
[2025-07-27 22:39:53] 2025-07-28 02:39:21,721 | INFO     | intersect: 3049966777.6485004
[2025-07-27 22:39:53] 2025-07-28 02:39:21,721 | INFO     | chi2: 0.0475488694603655
[2025-07-27 22:39:53] 2025-07-28 02:39:21,721 | INFO     | -- intersect: 3049966777.6485004
[2025-07-27 22:39:53] 2025-07-28 02:39:21,721 | INFO     | current memory leak: -1.74 B/s (using 83 data points, chi2=0.05)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | could have reported an average CPU frequency of 3277 MHz (7 samples)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | ..............................
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | . Timing measurements:
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | . get job = 0 s
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | . initial setup = 2 s
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | . payload setup = 11 s
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | . stage-in = 0 s
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | . payload execution = 5463 s
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | . stage-out = 0 s
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | . log creation = 0 s
[2025-07-27 22:39:53] 2025-07-28 02:39:21,722 | INFO     | ..............................
[2025-07-27 22:39:53] 2025-07-28 02:39:21,723 | INFO     | sufficient remaining disk space (86097526784 B)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,723 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,793 | INFO     | 
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | job summary report
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | --------------------------------------------------
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | PanDA job id: 6747525569
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | task id: 45743349
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | errors: (none)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | pilot state: finished 
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | transexitcode: 0
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | exeerrorcode: 0
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | exeerrordiag: 
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | exitcode: 0
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | exitmsg: OK
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | cpuconsumptiontime: 35359 s
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | nevents: 400
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | neventsw: 0
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | pid: 644872
[2025-07-27 22:39:53] 2025-07-28 02:39:21,794 | INFO     | pgrp: 644872
[2025-07-27 22:39:53] 2025-07-28 02:39:21,795 | INFO     | corecount: 8
[2025-07-27 22:39:53] 2025-07-28 02:39:21,795 | INFO     | event service: False
[2025-07-27 22:39:53] 2025-07-28 02:39:21,795 | INFO     | sizes: {0: 2397304, 1: 2397503, 7: 2397765, 11: 2397793, 5478: 2433382, 5479: 2433382, 5485: 2433704}
[2025-07-27 22:39:53] 2025-07-28 02:39:21,795 | INFO     | --------------------------------------------------
[2025-07-27 22:39:53] 2025-07-28 02:39:21,795 | INFO     | 
[2025-07-27 22:39:53] 2025-07-28 02:39:21,795 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:39:53] 2025-07-28 02:39:21,802 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6747525569: 3642796 B (within 2537553920 B limit)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,803 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6747525569/HITS.45743349._052116.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,803 | INFO     | total size of present files: 0 B (workdir size: 3642796 B)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,803 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6747525569/HITS.45743349._052116.pool.root.1 since it does not exist
[2025-07-27 22:39:53] 2025-07-28 02:39:21,821 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,822 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,823 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,823 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,823 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:39:53] 2025-07-28 02:39:21,823 | INFO     | job 6747525569 has completed (purged errors)
[2025-07-27 22:39:53] 2025-07-28 02:39:21,823 | INFO     | overall cleanup function is called
[2025-07-27 22:39:53] 2025-07-28 02:39:22,064 | INFO     | number of running child processes to parent process 644872: 1
[2025-07-27 22:39:53] 2025-07-28 02:39:22,064 | INFO     | maximum number of monitored processes: 6
[2025-07-27 22:39:53] 2025-07-28 02:39:22,064 | INFO     | aborting job monitoring since job object (job id=6747525569) has expired
[2025-07-27 22:39:53] 2025-07-28 02:39:22,831 | INFO     | --- collectZombieJob: --- 10, [644872]
[2025-07-27 22:39:53] 2025-07-28 02:39:22,831 | INFO     | zombie collector waiting for pid 644872
[2025-07-27 22:39:53] 2025-07-28 02:39:22,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:39:53] 2025-07-28 02:39:22,831 | INFO     | collected zombie processes
[2025-07-27 22:39:53] 2025-07-28 02:39:22,831 | INFO     | will attempt to kill all subprocesses of pid=644872
[2025-07-27 22:39:53] 2025-07-28 02:39:23,122 | INFO     | process IDs to be killed: [644872] (in reverse order)
[2025-07-27 22:39:53] 2025-07-28 02:39:23,220 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:39:53] 2025-07-28 02:39:23,221 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:39:53] 2025-07-28 02:39:23,233 | INFO     | did not find any defunct processes belonging to 644872
[2025-07-27 22:39:53] 2025-07-28 02:39:23,243 | INFO     | did not find any defunct processes belonging to 644872
[2025-07-27 22:39:53] 2025-07-28 02:39:23,244 | INFO     | ready for new job
[2025-07-27 22:39:53] 2025-07-28 02:39:23,244 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:39:53] 2025-07-28 02:39:23,245 | INFO     | ***************************************
[2025-07-27 22:39:53] 2025-07-28 02:39:23,245 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:39:53] 2025-07-28 02:39:23,245 | INFO     | ***************************************
[2025-07-27 22:39:53] 2025-07-28 02:39:23,246 | INFO     | 
[2025-07-27 22:39:53] 2025-07-28 02:39:23,263 | INFO     | architecture information:
[2025-07-27 22:39:53] 2025-07-28 02:39:23,263 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:39:53] 2025-07-28 02:39:23,287 | INFO     | cat /etc/os-release:
[2025-07-27 22:39:53] NAME="CentOS Linux"
[2025-07-27 22:39:53] VERSION="7 (Core)"
[2025-07-27 22:39:53] ID="centos"
[2025-07-27 22:39:53] ID_LIKE="rhel fedora"
[2025-07-27 22:39:53] VERSION_ID="7"
[2025-07-27 22:39:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:39:53] ANSI_COLOR="0;31"
[2025-07-27 22:39:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:39:53] HOME_URL="https://www.centos.org/"
[2025-07-27 22:39:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:39:53] 
[2025-07-27 22:39:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:39:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:39:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:39:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:39:53] 
[2025-07-27 22:39:53] 2025-07-28 02:39:23,287 | INFO     | ***************************************
[2025-07-27 22:39:53] 2025-07-28 02:39:23,790 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:39:53] 2025-07-28 02:39:23,813 | INFO     | sufficient remaining disk space (86101721088 B)
[2025-07-27 22:39:53] 2025-07-28 02:39:23,813 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:39:53] 2025-07-28 02:39:23,813 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:39:53] 2025-07-28 02:39:23,813 | INFO     | update_server=False
[2025-07-27 22:39:53] 2025-07-28 02:39:23,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:39:53] 2025-07-28 02:39:23,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:39:53] 2025-07-28 02:39:23,814 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:39:53] 2025-07-28 02:39:23,814 | INFO     | aborting loop
[2025-07-27 22:39:53] 2025-07-28 02:39:23,973 | INFO     | all payload control threads have been joined
[2025-07-27 22:39:53] 2025-07-28 02:39:24,330 | INFO     | all data control threads have been joined
[2025-07-27 22:39:53] 2025-07-28 02:39:24,819 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:24,819 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:24,850 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:24,912 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:24,970 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:24,978 | INFO     | [payload] control thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:25,335 | INFO     | [data] control thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:25,405 | INFO     | all job control threads have been joined
[2025-07-27 22:39:53] 2025-07-28 02:39:25,449 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:25,819 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:26,117 | INFO     | [job] validate thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:26,167 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:26,174 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:26,214 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:39:53] 2025-07-28 02:39:26,411 | INFO     | [job] control thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:26,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:39:53] 2025-07-28 02:39:27,809 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:30,219 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:33,927 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:39:53] 2025-07-28 02:39:34,932 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:39:53] 2025-07-28 02:39:36,766 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140693273892672)>', '<ExcThread(monitor, started 140692793849600)>']
[2025-07-27 22:39:53] 2025-07-28 02:39:41,791 | INFO     | all workflow threads have been joined
[2025-07-27 22:39:53] 2025-07-28 02:39:41,791 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:39:53] 2025-07-28 02:39:41,791 | INFO     | traces error code: 0
[2025-07-27 22:39:53] 2025-07-28 02:39:41,791 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:39:53] 2025-07-28 02:39:53,570 | INFO     | PID=638204 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 22:39:53] 2025-07-28 02:39:53,570 | INFO     | .. there are 9 such processes running
[2025-07-27 22:39:53] 2025-07-28 02:39:53,571 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:39:53] 2025-07-28 02:39:53,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:39:53] 2025-07-28 02:39:53,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:39:53] 2025-07-28 02:39:53,571 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:39:53] 2025-07-28 02:39:53,571 | INFO     | [monitor] control thread has ended
[2025-07-27 22:39:53] 2025-07-28 02:39:53,678 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:39:53] 2025-07-28 02:39:53,683 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:39:53] 2025-07-28 02:39:53,685 [wrapper] pilotpid: 638204
[2025-07-27 22:39:53] 2025-07-28 02:39:53,688 [wrapper] Pilot exit status: 0
[2025-07-27 22:39:53] 2025-07-28 02:39:53,706 [wrapper] pandaids: 6747525569
[2025-07-27 22:39:53] 2025-07-28 02:39:53,781 [wrapper] cleanup supervisor_pilot  969987 638205
[2025-07-27 22:39:53] 2025-07-28 02:39:53,784 [wrapper] Test setup, not cleaning
[2025-07-27 22:39:53] 2025-07-28 02:39:53,788 [wrapper] apfmon messages muted
[2025-07-27 22:39:53] 2025-07-28 02:39:53,791 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:39:53] 2025-07-28 02:39:53,794 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:39:53]  *** Error codes and diagnostics ***
[2025-07-27 22:39:53]     "exeErrorCode": 0,
[2025-07-27 22:39:53]     "exeErrorDiag": "",
[2025-07-27 22:39:53]     "pilotErrorCode": 0,
[2025-07-27 22:39:53]     "pilotErrorDiag": "",
[2025-07-27 22:39:53]  *** Listing of results directory ***
[2025-07-27 22:39:53] total 346132
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:02 pilot3.tar.gz
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 12:07 queuedata.json
[2025-07-27 22:39:53] -rwx------. 1 boincer umatlas     36292 Jul 27 12:07 runpilot2-wrapper.sh
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas       100 Jul 27 21:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:39:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 21:07 run_atlas
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas       105 Jul 27 21:07 job.xml
[2025-07-27 22:39:53] -rw-r--r--. 2 boincer umatlas 146724220 Jul 27 21:07 EVNT.45743347._002843.pool.root.1
[2025-07-27 22:39:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 21:07 start_atlas.sh
[2025-07-27 22:39:53] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 21:07 shared
[2025-07-27 22:39:53] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 21:07 input.tar.gz
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas         0 Jul 27 21:07 boinc_lockfile
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 21:07 pandaJob.out
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas    980125 Jul 27 21:07 agis_schedconf.cvmfs.json
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas   1593052 Jul 27 21:07 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:39:53] drwx------. 4 boincer umatlas      4096 Jul 27 21:07 pilot3
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas 202134212 Jul 27 22:38 HITS.45743349._052116.pool.root.1
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas      6896 Jul 27 22:38 init_data.xml
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas       530 Jul 27 22:38 boinc_task_state.xml
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas      1031 Jul 27 22:39 memory_monitor_summary.json
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas    315522 Jul 27 22:39 log.45743349._052116.job.log.tgz.1
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas      7772 Jul 27 22:39 heartbeat.json
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 22:39 boinc_mmap_file
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas        27 Jul 27 22:39 wrapper_checkpoint.txt
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas       821 Jul 27 22:39 pilotlog.txt
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas        95 Jul 27 22:39 pilot_heartbeat.json
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas    534455 Jul 27 22:39 log.45743349._052116.job.log.1
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas       357 Jul 27 22:39 output.list
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas       620 Jul 27 22:39 runtime_log
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas    870400 Jul 27 22:39 result.tar.gz
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 22:39 runtime_log.err
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas       652 Jul 27 22:39 5IvKDml5I07n9Rq4apOajLDm4fhM0noT9bVof3QYDmam2KDm1HtzBn.diag
[2025-07-27 22:39:53] -rw-r--r--. 1 boincer umatlas     22540 Jul 27 22:39 stderr.txt
[2025-07-27 22:39:53] HITS file was successfully produced:
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas 202134212 Jul 27 22:38 shared/HITS.pool.root.1
[2025-07-27 22:39:53]  *** Contents of shared directory: ***
[2025-07-27 22:39:53] total 342092
[2025-07-27 22:39:53] -rw-r--r--. 2 boincer umatlas 146724220 Jul 27 21:07 ATLAS.root_0
[2025-07-27 22:39:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 21:07 start_atlas.sh
[2025-07-27 22:39:53] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 21:07 input.tar.gz
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas 202134212 Jul 27 22:38 HITS.pool.root.1
[2025-07-27 22:39:53] -rw-------. 1 boincer umatlas    870400 Jul 27 22:39 result.tar.gz
22:39:55 (634163): run_atlas exited; CPU time 35378.152904
22:39:55 (634163): called boinc_finish(0)

</stderr_txt>
]]>

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