Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:26:52 (1674440): wrapper (7.7.26015): starting
22:26:52 (1674440): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 22:26:52] Arguments: --nthreads 12
[2025-07-27 22:26:52] Threads: 12
[2025-07-27 22:26:52] Checking for CVMFS
[2025-07-27 22:26:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:26:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:26:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:26:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:26:53] 2.12.6.0 18753 19221 315024 148832 1 68 24222961 32935937 8589 16776704 0 34518312 99.616 74789024 26043 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 22:26:53] CVMFS is ok
[2025-07-27 22:26:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:26:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:26:53] Further information can be found at the LHC@home message board.
[2025-07-27 22:26:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:26:53] Checking for apptainer binary...
[2025-07-27 22:26:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:26:53] Running /usr/bin/apptainer --version
[2025-07-27 22:26:53] apptainer version 1.4.1-1.el9
[2025-07-27 22:26:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:26:53] c6-1-24-4.aglt2.org
[2025-07-27 22:26:53] apptainer works
[2025-07-27 22:26:53] Set ATHENA_PROC_NUMBER=12
[2025-07-27 22:26:53] Set ATHENA_CORE_NUMBER=12
[2025-07-27 22:26:53] Starting ATLAS job with PandaID=6747412315
[2025-07-27 22:26:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:42:28]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:42:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:42:28]  replicas=None
[2025-07-27 23:42:28]  scope=mc23_13p6TeV
[2025-07-27 23:42:28]  status=None
[2025-07-27 23:42:28]  status_code=0
[2025-07-27 23:42:28]  storage_token=
[2025-07-27 23:42:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747412315/log.45743349._049417.job.log.tgz.1
[2025-07-27 23:42:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7c/52/log.45743349._049417.job.log.tgz.1
[2025-07-27 23:42:28]  workdir=None
[2025-07-27 23:42:28] ]
[2025-07-27 23:42:28] 2025-07-28 03:41:47,479 | INFO     | transferring file log.45743349._049417.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747412315/log.45743349._049417.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 23:42:28] 2025-07-28 03:41:47,479 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747412315/log.45743349._049417.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049417.job
[2025-07-27 23:42:28] 2025-07-28 03:41:47,499 | INFO     | adding to output.list: log.45743349._049417.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7c/52/log.45743349._049417.job.log.tg
[2025-07-27 23:42:28] 2025-07-28 03:41:47,500 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:42:28] 2025-07-28 03:41:47,500 | INFO     | summary of transferred files:
[2025-07-27 23:42:28] 2025-07-28 03:41:47,500 | INFO     |  -- lfn=log.45743349._049417.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:42:28] 2025-07-28 03:41:47,500 | INFO     | stage-out finished correctly
[2025-07-27 23:42:28] 2025-07-28 03:41:47,596 | INFO     | monitor loop #334: job 0:6747412315 is in state 'finished'
[2025-07-27 23:42:28] 2025-07-28 03:41:47,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:42:28] 2025-07-28 03:41:48,434 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:42:28] 2025-07-28 03:41:50,099 | INFO     | monitor loop #335: job 0:6747412315 is in state 'finished'
[2025-07-27 23:42:28] 2025-07-28 03:41:50,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:42:28] 2025-07-28 03:41:50,549 | INFO     | job 6747412315 has state=finished
[2025-07-27 23:42:28] 2025-07-28 03:41:50,550 | INFO     | preparing for final server update for job 6747412315 in state='finished'
[2025-07-27 23:42:28] 2025-07-28 03:41:50,550 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:42:28] 2025-07-28 03:41:50,550 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:42:28] 2025-07-28 03:41:50,550 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:42:28] 2025-07-28 03:41:50,551 | INFO     | job 6747412315 has finished - writing final server update
[2025-07-27 23:42:28] 2025-07-28 03:41:50,551 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:42:28] 2025-07-28 03:41:50,551 | INFO     | executing command: lscpu
[2025-07-27 23:42:28] 2025-07-28 03:41:50,605 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:42:28] 2025-07-28 03:41:52,602 | INFO     | monitor loop #336: job 0:6747412315 is in state 'finished'
[2025-07-27 23:42:28] 2025-07-28 03:41:52,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 23:42:28] 2025-07-28 03:41:54,820 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 23:42:28] 2025-07-28 03:41:54,824 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2641.781589285714
[2025-07-27 23:42:28] 2025-07-28 03:41:54,833 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412315/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:42:28] 2025-07-28 03:41:54,833 | INFO     | extracted standard info from prmon json
[2025-07-27 23:42:28] 2025-07-28 03:41:54,834 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:42:28] 2025-07-28 03:41:54,834 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:42:28] 2025-07-28 03:41:54,834 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:42:28] 2025-07-28 03:41:54,834 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:42:28] 2025-07-28 03:41:54,835 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:42:28] 2025-07-28 03:41:54,836 | INFO     | sum of square deviations: 89127252.5
[2025-07-27 23:42:28] 2025-07-28 03:41:54,836 | INFO     | sum of deviations: -11514530738.999998
[2025-07-27 23:42:28] 2025-07-28 03:41:54,836 | INFO     | mean x: 1753671938.5
[2025-07-27 23:42:28] 2025-07-28 03:41:54,836 | INFO     | mean y: 2662334.1818181816
[2025-07-27 23:42:28] 2025-07-28 03:41:54,836 | INFO     | -- intersect: 226563101207.57764
[2025-07-27 23:42:28] 2025-07-28 03:41:54,836 | INFO     | intersect: 226563101207.57764
[2025-07-27 23:42:28] 2025-07-28 03:41:54,837 | INFO     | chi2: 0.15249189229588792
[2025-07-27 23:42:28] 2025-07-28 03:41:54,837 | INFO     | -- intersect: 226563101207.57764
[2025-07-27 23:42:28] 2025-07-28 03:41:54,837 | INFO     | current memory leak: -129.19 B/s (using 66 data points, chi2=0.15)
[2025-07-27 23:42:28] 2025-07-28 03:41:54,837 | INFO     | could have reported an average CPU frequency of 2664 MHz (6 samples)
[2025-07-27 23:42:28] 2025-07-28 03:41:54,837 | INFO     | ..............................
[2025-07-27 23:42:28] 2025-07-28 03:41:54,837 | INFO     | . Timing measurements:
[2025-07-27 23:42:28] 2025-07-28 03:41:54,837 | INFO     | . get job = 0 s
[2025-07-27 23:42:28] 2025-07-28 03:41:54,837 | INFO     | . initial setup = 2 s
[2025-07-27 23:42:28] 2025-07-28 03:41:54,838 | INFO     | . payload setup = 6 s
[2025-07-27 23:42:28] 2025-07-28 03:41:54,838 | INFO     | . stage-in = 0 s
[2025-07-27 23:42:28] 2025-07-28 03:41:54,838 | INFO     | . payload execution = 4456 s
[2025-07-27 23:42:28] 2025-07-28 03:41:54,838 | INFO     | . stage-out = 0 s
[2025-07-27 23:42:28] 2025-07-28 03:41:54,838 | INFO     | . log creation = 0 s
[2025-07-27 23:42:28] 2025-07-28 03:41:54,838 | INFO     | ..............................
[2025-07-27 23:42:28] 2025-07-28 03:41:54,913 | INFO     | 
[2025-07-27 23:42:28] 2025-07-28 03:41:54,913 | INFO     | job summary report
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | --------------------------------------------------
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | PanDA job id: 6747412315
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | task id: 45743349
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | errors: (none)
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | pilot state: finished 
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | transexitcode: 0
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | exeerrorcode: 0
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | exeerrordiag: 
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | exitcode: 0
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | exitmsg: OK
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | cpuconsumptiontime: 47227 s
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | nevents: 400
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | neventsw: 0
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | pid: 1684948
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | pgrp: 1684948
[2025-07-27 23:42:28] 2025-07-28 03:41:54,914 | INFO     | corecount: 12
[2025-07-27 23:42:28] 2025-07-28 03:41:54,915 | INFO     | event service: False
[2025-07-27 23:42:28] 2025-07-28 03:41:54,915 | INFO     | sizes: {0: 2397253, 1: 2397452, 4: 2397714, 11: 2397742, 4467: 2423965, 4469: 2432963, 4470: 2433147, 4476: 2433341}
[2025-07-27 23:42:28] 2025-07-28 03:41:54,915 | INFO     | --------------------------------------------------
[2025-07-27 23:42:28] 2025-07-28 03:41:54,915 | INFO     | 
[2025-07-27 23:42:28] 2025-07-28 03:41:54,915 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 23:42:28] 2025-07-28 03:41:54,936 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,936 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,936 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,936 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,936 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,936 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,936 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:42:28] 2025-07-28 03:41:54,937 | INFO     | job 6747412315 has completed (purged errors)
[2025-07-27 23:42:28] 2025-07-28 03:41:54,938 | INFO     | overall cleanup function is called
[2025-07-27 23:42:28] 2025-07-28 03:41:55,424 | INFO     | PID=1678025 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 23:42:28] 2025-07-28 03:41:55,424 | INFO     | .. there are 11 such processes running
[2025-07-27 23:42:28] 2025-07-28 03:41:55,945 | INFO     | --- collectZombieJob: --- 10, [1684948]
[2025-07-27 23:42:28] 2025-07-28 03:41:55,945 | INFO     | zombie collector waiting for pid 1684948
[2025-07-27 23:42:28] 2025-07-28 03:41:55,946 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:42:28] 2025-07-28 03:41:55,946 | INFO     | collected zombie processes
[2025-07-27 23:42:28] 2025-07-28 03:41:55,946 | INFO     | will attempt to kill all subprocesses of pid=1684948
[2025-07-27 23:42:28] 2025-07-28 03:41:56,173 | INFO     | process IDs to be killed: [1684948] (in reverse order)
[2025-07-27 23:42:28] 2025-07-28 03:41:56,273 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:42:28] 2025-07-28 03:41:56,274 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:42:28] 2025-07-28 03:41:56,286 | INFO     | did not find any defunct processes belonging to 1684948
[2025-07-27 23:42:28] 2025-07-28 03:41:56,298 | INFO     | did not find any defunct processes belonging to 1684948
[2025-07-27 23:42:28] 2025-07-28 03:41:56,299 | INFO     | ready for new job
[2025-07-27 23:42:28] 2025-07-28 03:41:56,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:42:28] 2025-07-28 03:41:56,301 | INFO     | ***************************************
[2025-07-27 23:42:28] 2025-07-28 03:41:56,301 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:42:28] 2025-07-28 03:41:56,301 | INFO     | ***************************************
[2025-07-27 23:42:28] 2025-07-28 03:41:56,301 | INFO     | 
[2025-07-27 23:42:28] 2025-07-28 03:41:56,317 | INFO     | architecture information:
[2025-07-27 23:42:28] 2025-07-28 03:41:56,318 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:42:28] 2025-07-28 03:41:56,333 | INFO     | cat /etc/os-release:
[2025-07-27 23:42:28] NAME="CentOS Linux"
[2025-07-27 23:42:28] VERSION="7 (Core)"
[2025-07-27 23:42:28] ID="centos"
[2025-07-27 23:42:28] ID_LIKE="rhel fedora"
[2025-07-27 23:42:28] VERSION_ID="7"
[2025-07-27 23:42:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:42:28] ANSI_COLOR="0;31"
[2025-07-27 23:42:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:42:28] HOME_URL="https://www.centos.org/"
[2025-07-27 23:42:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:42:28] 
[2025-07-27 23:42:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:42:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:42:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:42:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:42:28] 
[2025-07-27 23:42:28] 2025-07-28 03:41:56,333 | INFO     | ***************************************
[2025-07-27 23:42:28] 2025-07-28 03:41:56,836 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 23:42:28] 2025-07-28 03:41:56,853 | INFO     | sufficient remaining disk space (76256641024 B)
[2025-07-27 23:42:28] 2025-07-28 03:41:56,853 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:42:28] 2025-07-28 03:41:56,853 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:42:28] 2025-07-28 03:41:56,853 | INFO     | update_server=False
[2025-07-27 23:42:28] 2025-07-28 03:41:56,854 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:42:28] 2025-07-28 03:41:56,854 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:42:28] 2025-07-28 03:41:56,854 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:42:28] 2025-07-28 03:41:56,854 | INFO     | aborting loop
[2025-07-27 23:42:28] 2025-07-28 03:41:57,689 | INFO     | all data control threads have been joined
[2025-07-27 23:42:28] 2025-07-28 03:41:57,690 | INFO     | all job control threads have been joined
[2025-07-27 23:42:28] 2025-07-28 03:41:57,858 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:57,859 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:57,859 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:57,869 | INFO     | all payload control threads have been joined
[2025-07-27 23:42:28] 2025-07-28 03:41:57,905 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:58,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:42:28] 2025-07-28 03:41:58,203 | INFO     | [job] validate thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:58,438 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:58,465 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:58,508 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:58,694 | INFO     | [data] control thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:58,695 | INFO     | [job] control thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:58,874 | INFO     | [payload] control thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:59,029 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:42:28] 2025-07-28 03:41:59,103 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:41:59,366 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:42:00,091 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:42:00,503 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-07-27 23:42:28] 2025-07-28 03:42:03,034 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:42:06,911 | INFO     | job.realtimelogging is not enabled
[2025-07-27 23:42:28] 2025-07-28 03:42:07,916 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:42:28] 2025-07-28 03:42:09,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140518191056704)>', '<ExcThread(monitor, started 140517429995264)>']
[2025-07-27 23:42:28] 2025-07-28 03:42:14,205 | INFO     | all workflow threads have been joined
[2025-07-27 23:42:28] 2025-07-28 03:42:14,205 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:42:28] 2025-07-28 03:42:14,206 | INFO     | traces error code: 0
[2025-07-27 23:42:28] 2025-07-28 03:42:14,206 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:42:28] 2025-07-28 03:42:27,889 | INFO     | PID=1678025 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 23:42:28] 2025-07-28 03:42:27,889 | INFO     | .. there are 11 such processes running
[2025-07-27 23:42:28] 2025-07-28 03:42:27,889 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:42:28] 2025-07-28 03:42:27,889 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:42:28] 2025-07-28 03:42:27,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:42:28] 2025-07-28 03:42:27,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:42:28] 2025-07-28 03:42:27,890 | INFO     | [monitor] control thread has ended
[2025-07-27 23:42:28] 2025-07-28 03:42:28,037 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:42:28] 2025-07-28 03:42:28,040 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:42:28] 2025-07-28 03:42:28,043 [wrapper] pilotpid: 1678025
[2025-07-27 23:42:28] 2025-07-28 03:42:28,046 [wrapper] Pilot exit status: 0
[2025-07-27 23:42:28] 2025-07-28 03:42:28,058 [wrapper] pandaids: 6747412315
[2025-07-27 23:42:28] 2025-07-28 03:42:28,121 [wrapper] cleanup supervisor_pilot 1867478 1678026
[2025-07-27 23:42:28] 2025-07-28 03:42:28,123 [wrapper] Test setup, not cleaning
[2025-07-27 23:42:28] 2025-07-28 03:42:28,127 [wrapper] apfmon messages muted
[2025-07-27 23:42:28] 2025-07-28 03:42:28,130 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:42:28] 2025-07-28 03:42:28,133 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:42:28]  *** Error codes and diagnostics ***
[2025-07-27 23:42:28]     "exeErrorCode": 0,
[2025-07-27 23:42:28]     "exeErrorDiag": "",
[2025-07-27 23:42:28]     "pilotErrorCode": 0,
[2025-07-27 23:42:28]     "pilotErrorDiag": "",
[2025-07-27 23:42:28]  *** Listing of results directory ***
[2025-07-27 23:42:28] total 442660
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 09:04 pilot3.tar.gz
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 09:39 queuedata.json
[2025-07-27 23:42:28] -rwx------. 1 boincer umatlas     36292 Jul 27 09:40 runpilot2-wrapper.sh
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:42:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:26 run_atlas
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:26 job.xml
[2025-07-27 23:42:28] -rw-r--r--. 2 boincer umatlas 230201175 Jul 27 22:26 EVNT.45743347._002727.pool.root.1
[2025-07-27 23:42:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:26 start_atlas.sh
[2025-07-27 23:42:28] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:26 shared
[2025-07-27 23:42:28] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 22:26 input.tar.gz
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:26 boinc_lockfile
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 22:26 pandaJob.out
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas    980125 Jul 27 22:27 agis_schedconf.cvmfs.json
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:27 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:42:28] drwx------. 4 boincer umatlas      4096 Jul 27 22:27 pilot3
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas      6843 Jul 27 23:40 init_data.xml
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas 217543353 Jul 27 23:41 HITS.45743349._049417.pool.root.1
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas       529 Jul 27 23:41 boinc_task_state.xml
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas        95 Jul 27 23:41 pilot_heartbeat.json
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas      1038 Jul 27 23:41 memory_monitor_summary.json
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas    377647 Jul 27 23:41 log.45743349._049417.job.log.tgz.1
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas      7828 Jul 27 23:41 heartbeat.json
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas        27 Jul 27 23:42 wrapper_checkpoint.txt
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 23:42 boinc_mmap_file
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas       823 Jul 27 23:42 pilotlog.txt
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas    451193 Jul 27 23:42 log.45743349._049417.job.log.1
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas       357 Jul 27 23:42 output.list
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas       620 Jul 27 23:42 runtime_log
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas    849920 Jul 27 23:42 result.tar.gz
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 23:42 runtime_log.err
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas       654 Jul 27 23:42 q8hKDmQnG07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtQVLDmLlbiLo.diag
[2025-07-27 23:42:28] -rw-r--r--. 1 boincer umatlas     21966 Jul 27 23:42 stderr.txt
[2025-07-27 23:42:28] HITS file was successfully produced:
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas 217543353 Jul 27 23:41 shared/HITS.pool.root.1
[2025-07-27 23:42:28]  *** Contents of shared directory: ***
[2025-07-27 23:42:28] total 438640
[2025-07-27 23:42:28] -rw-r--r--. 2 boincer umatlas 230201175 Jul 27 22:26 ATLAS.root_0
[2025-07-27 23:42:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:26 start_atlas.sh
[2025-07-27 23:42:28] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 22:26 input.tar.gz
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas 217543353 Jul 27 23:41 HITS.pool.root.1
[2025-07-27 23:42:28] -rw-------. 1 boincer umatlas    849920 Jul 27 23:42 result.tar.gz
23:42:30 (1674440): run_atlas exited; CPU time 47304.472847
23:42:30 (1674440): called boinc_finish(0)

</stderr_txt>
]]>

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