Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:58:24 (623536): wrapper (7.7.26015): starting
20:58:24 (623536): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 20:58:24] Arguments: --nthreads 8
[2025-07-27 20:58:24] Threads: 8
[2025-07-27 20:58:24] Checking for CVMFS
[2025-07-27 20:58:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:58:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:58:24] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:58:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:58:25] 2.13.1.0 5062 2689 120148 148829 2 105 13579960 40960001 11786 16776704 0 7245051 99.747 4993723 47747 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 20:58:25] CVMFS is ok
[2025-07-27 20:58:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:58:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:58:25] Further information can be found at the LHC@home message board.
[2025-07-27 20:58:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:58:25] Checking for apptainer binary...
[2025-07-27 20:58:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:58:25] Running /usr/bin/apptainer --version
[2025-07-27 20:58:26] apptainer version 1.4.1-1.el9
[2025-07-27 20:58:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:58:26] c-206-40.aglt2.org
[2025-07-27 20:58:26] apptainer works
[2025-07-27 20:58:26] Set ATHENA_PROC_NUMBER=8
[2025-07-27 20:58:26] Set ATHENA_CORE_NUMBER=8
[2025-07-27 20:58:26] Starting ATLAS job with PandaID=6747626662
[2025-07-27 20:58:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:40:56]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:40:56] 2025-07-28 02:39:49,316 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:40:56] 2025-07-28 02:39:49,316 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:40:56] 2025-07-28 02:39:49,317 | INFO     | job 6747626662 has finished - writing final server update
[2025-07-27 22:40:56] 2025-07-28 02:39:49,317 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:40:56] 2025-07-28 02:39:49,318 | INFO     | executing command: lscpu
[2025-07-27 22:40:56] 2025-07-28 02:39:49,724 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:40:56] 2025-07-28 02:39:50,259 | INFO     | monitor loop #436: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:39:50,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:39:52,778 | INFO     | monitor loop #437: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:39:52,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:39:55,283 | INFO     | monitor loop #438: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:39:55,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:39:57,788 | INFO     | monitor loop #439: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:39:57,788 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:40:00,297 | INFO     | monitor loop #440: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:40:00,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:40:02,809 | INFO     | monitor loop #441: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:40:02,810 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:40:05,330 | INFO     | monitor loop #442: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:40:05,331 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:40:07,844 | INFO     | monitor loop #443: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:40:07,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:40:10,203 | INFO     | PID=627243 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 22:40:56] 2025-07-28 02:40:10,204 | INFO     | .. there are 10 such processes running
[2025-07-27 22:40:56] 2025-07-28 02:40:10,349 | INFO     | monitor loop #444: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:40:10,350 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:40:12,854 | INFO     | monitor loop #445: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:40:12,855 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:40:15,359 | INFO     | monitor loop #446: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:40:15,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:40:17,864 | INFO     | monitor loop #447: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:40:17,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:40:20,384 | INFO     | monitor loop #448: job 0:6747626662 is in state 'finished'
[2025-07-27 22:40:56] 2025-07-28 02:40:20,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:40:56] 2025-07-28 02:40:21,924 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 22:40:56] 2025-07-28 02:40:21,933 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3216.9858281250017
[2025-07-27 22:40:56] 2025-07-28 02:40:21,943 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747626662/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:40:56] 2025-07-28 02:40:21,943 | INFO     | extracted standard info from prmon json
[2025-07-27 22:40:56] 2025-07-28 02:40:21,943 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:40:56] 2025-07-28 02:40:21,943 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:40:56] 2025-07-28 02:40:21,944 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:40:56] 2025-07-28 02:40:21,944 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:40:56] 2025-07-28 02:40:21,945 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:40:56] 2025-07-28 02:40:21,946 | INFO     | sum of square deviations: 226051646.32222208
[2025-07-27 22:40:56] 2025-07-28 02:40:21,946 | INFO     | sum of deviations: -8067942384.700003
[2025-07-27 22:40:56] 2025-07-28 02:40:21,946 | INFO     | mean x: 1753667503.6555555
[2025-07-27 22:40:56] 2025-07-28 02:40:21,946 | INFO     | mean y: 2587145.3
[2025-07-27 22:40:56] 2025-07-28 02:40:21,947 | INFO     | -- intersect: 62592214832.62037
[2025-07-27 22:40:56] 2025-07-28 02:40:21,947 | INFO     | intersect: 62592214832.62037
[2025-07-27 22:40:56] 2025-07-28 02:40:21,947 | INFO     | chi2: 0.19395465994176458
[2025-07-27 22:40:56] 2025-07-28 02:40:21,947 | INFO     | -- intersect: 62592214832.62037
[2025-07-27 22:40:56] 2025-07-28 02:40:21,947 | INFO     | current memory leak: -35.69 B/s (using 90 data points, chi2=0.19)
[2025-07-27 22:40:56] 2025-07-28 02:40:21,947 | INFO     | could have reported an average CPU frequency of 3226 MHz (7 samples)
[2025-07-27 22:40:56] 2025-07-28 02:40:21,947 | INFO     | ..............................
[2025-07-27 22:40:56] 2025-07-28 02:40:21,947 | INFO     | . Timing measurements:
[2025-07-27 22:40:56] 2025-07-28 02:40:21,948 | INFO     | . get job = 0 s
[2025-07-27 22:40:56] 2025-07-28 02:40:21,948 | INFO     | . initial setup = 6 s
[2025-07-27 22:40:56] 2025-07-28 02:40:21,948 | INFO     | . payload setup = 35 s
[2025-07-27 22:40:56] 2025-07-28 02:40:21,948 | INFO     | . stage-in = 0 s
[2025-07-27 22:40:56] 2025-07-28 02:40:21,948 | INFO     | . payload execution = 5922 s
[2025-07-27 22:40:56] 2025-07-28 02:40:21,948 | INFO     | . stage-out = 2 s
[2025-07-27 22:40:56] 2025-07-28 02:40:21,948 | INFO     | . log creation = 0 s
[2025-07-27 22:40:56] 2025-07-28 02:40:21,948 | INFO     | ..............................
[2025-07-27 22:40:56] 2025-07-28 02:40:22,033 | INFO     | 
[2025-07-27 22:40:56] 2025-07-28 02:40:22,033 | INFO     | job summary report
[2025-07-27 22:40:56] 2025-07-28 02:40:22,033 | INFO     | --------------------------------------------------
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | PanDA job id: 6747626662
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | task id: 45743349
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | errors: (none)
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | pilot state: finished 
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | transexitcode: 0
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | exeerrorcode: 0
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | exeerrordiag: 
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | exitcode: 0
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | exitmsg: OK
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | cpuconsumptiontime: 36778 s
[2025-07-27 22:40:56] 2025-07-28 02:40:22,034 | INFO     | nevents: 400
[2025-07-27 22:40:56] 2025-07-28 02:40:22,035 | INFO     | neventsw: 0
[2025-07-27 22:40:56] 2025-07-28 02:40:22,035 | INFO     | pid: 634169
[2025-07-27 22:40:56] 2025-07-28 02:40:22,035 | INFO     | pgrp: 634169
[2025-07-27 22:40:56] 2025-07-28 02:40:22,035 | INFO     | corecount: 8
[2025-07-27 22:40:56] 2025-07-28 02:40:22,035 | INFO     | event service: False
[2025-07-27 22:40:56] 2025-07-28 02:40:22,035 | INFO     | sizes: {0: 2397304, 1: 2397503, 12: 2397503, 23: 2397531, 28: 2397821, 34: 2397849, 5962: 2424736, 5965: 2433734, 5966: 2433790, 6000: 2433984}
[2025-07-27 22:40:56] 2025-07-28 02:40:22,035 | INFO     | --------------------------------------------------
[2025-07-27 22:40:56] 2025-07-28 02:40:22,035 | INFO     | 
[2025-07-27 22:40:56] 2025-07-28 02:40:22,035 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:40:56] 2025-07-28 02:40:22,180 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,180 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,180 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,180 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,180 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,180 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:40:56] 2025-07-28 02:40:22,181 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,182 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:40:56] 2025-07-28 02:40:22,182 | INFO     | job 6747626662 has completed (purged errors)
[2025-07-27 22:40:56] 2025-07-28 02:40:22,182 | INFO     | overall cleanup function is called
[2025-07-27 22:40:56] 2025-07-28 02:40:23,195 | INFO     | --- collectZombieJob: --- 10, [634169]
[2025-07-27 22:40:56] 2025-07-28 02:40:23,195 | INFO     | zombie collector waiting for pid 634169
[2025-07-27 22:40:56] 2025-07-28 02:40:23,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:40:56] 2025-07-28 02:40:23,196 | INFO     | collected zombie processes
[2025-07-27 22:40:56] 2025-07-28 02:40:23,196 | INFO     | will attempt to kill all subprocesses of pid=634169
[2025-07-27 22:40:56] 2025-07-28 02:40:23,621 | INFO     | process IDs to be killed: [634169] (in reverse order)
[2025-07-27 22:40:56] 2025-07-28 02:40:24,248 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:40:56] 2025-07-28 02:40:24,248 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:40:56] 2025-07-28 02:40:24,272 | INFO     | did not find any defunct processes belonging to 634169
[2025-07-27 22:40:56] 2025-07-28 02:40:24,282 | INFO     | did not find any defunct processes belonging to 634169
[2025-07-27 22:40:56] 2025-07-28 02:40:24,283 | INFO     | ready for new job
[2025-07-27 22:40:56] 2025-07-28 02:40:24,283 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:40:56] 2025-07-28 02:40:24,285 | INFO     | ***************************************
[2025-07-27 22:40:56] 2025-07-28 02:40:24,285 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:40:56] 2025-07-28 02:40:24,285 | INFO     | ***************************************
[2025-07-27 22:40:56] 2025-07-28 02:40:24,285 | INFO     | 
[2025-07-27 22:40:56] 2025-07-28 02:40:24,289 | INFO     | architecture information:
[2025-07-27 22:40:56] 2025-07-28 02:40:24,289 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:40:56] 2025-07-28 02:40:24,392 | INFO     | cat /etc/os-release:
[2025-07-27 22:40:56] NAME="CentOS Linux"
[2025-07-27 22:40:56] VERSION="7 (Core)"
[2025-07-27 22:40:56] ID="centos"
[2025-07-27 22:40:56] ID_LIKE="rhel fedora"
[2025-07-27 22:40:56] VERSION_ID="7"
[2025-07-27 22:40:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:40:56] ANSI_COLOR="0;31"
[2025-07-27 22:40:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:40:56] HOME_URL="https://www.centos.org/"
[2025-07-27 22:40:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:40:56] 
[2025-07-27 22:40:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:40:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:40:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:40:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:40:56] 
[2025-07-27 22:40:56] 2025-07-28 02:40:24,393 | INFO     | ***************************************
[2025-07-27 22:40:56] 2025-07-28 02:40:24,896 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:40:56] 2025-07-28 02:40:24,946 | INFO     | sufficient remaining disk space (86174072832 B)
[2025-07-27 22:40:56] 2025-07-28 02:40:24,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:40:56] 2025-07-28 02:40:24,946 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:40:56] 2025-07-28 02:40:24,946 | INFO     | update_server=False
[2025-07-27 22:40:56] 2025-07-28 02:40:24,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:40:56] 2025-07-28 02:40:24,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:40:56] 2025-07-28 02:40:25,269 | INFO     | all data control threads have been joined
[2025-07-27 22:40:56] 2025-07-28 02:40:25,353 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:40:56] 2025-07-28 02:40:25,409 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 22:40:56] 2025-07-28 02:40:25,411 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 22:40:56] 2025-07-28 02:40:25,411 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:40:56] 2025-07-28 02:40:25,411 | INFO     | will abort loop
[2025-07-27 22:40:56] 2025-07-28 02:40:25,756 | INFO     | all job control threads have been joined
[2025-07-27 22:40:56] 2025-07-28 02:40:25,787 | INFO     | all payload control threads have been joined
[2025-07-27 22:40:56] 2025-07-28 02:40:25,952 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:26,275 | INFO     | [data] control thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:26,373 | INFO     | [job] validate thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:26,417 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:26,598 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:26,696 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:26,700 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:26,762 | INFO     | [job] control thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:26,768 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:26,795 | INFO     | [payload] control thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:26,953 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:27,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:40:56] 2025-07-28 02:40:27,294 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:27,372 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:28,057 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:29,366 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:35,898 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:40:56] 2025-07-28 02:40:36,904 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:40:56] 2025-07-28 02:40:37,923 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108668344128)>', '<ExcThread(monitor, started 140107638093568)>']
[2025-07-27 22:40:56] 2025-07-28 02:40:42,949 | INFO     | all workflow threads have been joined
[2025-07-27 22:40:56] 2025-07-28 02:40:42,949 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:40:56] 2025-07-28 02:40:42,950 | INFO     | traces error code: 0
[2025-07-27 22:40:56] 2025-07-28 02:40:42,950 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:40:56] 2025-07-28 02:40:54,789 | INFO     | PID=627243 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 22:40:56] 2025-07-28 02:40:54,789 | INFO     | .. there are 10 such processes running
[2025-07-27 22:40:56] 2025-07-28 02:40:54,789 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:40:56] 2025-07-28 02:40:54,789 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:40:56] 2025-07-28 02:40:54,789 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:40:56] 2025-07-28 02:40:54,789 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:40:56] 2025-07-28 02:40:54,789 | INFO     | [monitor] control thread has ended
[2025-07-27 22:40:56] 2025-07-28 02:40:55,016 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:40:56] 2025-07-28 02:40:55,065 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:40:56] 2025-07-28 02:40:55,125 [wrapper] pilotpid: 627243
[2025-07-27 22:40:56] 2025-07-28 02:40:55,166 [wrapper] Pilot exit status: 0
[2025-07-27 22:40:56] 2025-07-28 02:40:55,346 [wrapper] pandaids: 6747626662
[2025-07-27 22:40:56] 2025-07-28 02:40:55,652 [wrapper] cleanup supervisor_pilot  788570 627244
[2025-07-27 22:40:56] 2025-07-28 02:40:55,699 [wrapper] Test setup, not cleaning
[2025-07-27 22:40:56] 2025-07-28 02:40:55,766 [wrapper] apfmon messages muted
[2025-07-27 22:40:56] 2025-07-28 02:40:55,819 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:40:56] 2025-07-28 02:40:55,900 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:40:56]  *** Error codes and diagnostics ***
[2025-07-27 22:40:56]     "exeErrorCode": 0,
[2025-07-27 22:40:56]     "exeErrorDiag": "",
[2025-07-27 22:40:56]     "pilotErrorCode": 0,
[2025-07-27 22:40:56]     "pilotErrorDiag": "",
[2025-07-27 22:40:56]  *** Listing of results directory ***
[2025-07-27 22:40:56] total 346876
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 15:12 pilot3.tar.gz
[2025-07-27 22:40:56] -rwx------. 1 boincer umatlas     36292 Jul 27 15:33 runpilot2-wrapper.sh
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 15:33 queuedata.json
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:40:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:58 run_atlas
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:58 job.xml
[2025-07-27 22:40:56] -rw-r--r--. 2 boincer umatlas 144438825 Jul 27 20:58 EVNT.45743347._002968.pool.root.1
[2025-07-27 22:40:56] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:58 start_atlas.sh
[2025-07-27 22:40:56] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:58 shared
[2025-07-27 22:40:56] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 20:58 input.tar.gz
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:58 boinc_lockfile
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 20:58 pandaJob.out
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas    980125 Jul 27 20:59 agis_schedconf.cvmfs.json
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:59 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:40:56] drwx------. 4 boincer umatlas      4096 Jul 27 20:59 pilot3
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas      6895 Jul 27 22:36 init_data.xml
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas 205137921 Jul 27 22:38 HITS.45743349._054723.pool.root.1
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas       529 Jul 27 22:38 boinc_task_state.xml
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas      1031 Jul 27 22:39 memory_monitor_summary.json
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas    304564 Jul 27 22:39 log.45743349._054723.job.log.tgz.1
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas        95 Jul 27 22:39 pilot_heartbeat.json
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas      7770 Jul 27 22:40 heartbeat.json
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 22:40 boinc_mmap_file
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas        27 Jul 27 22:40 wrapper_checkpoint.txt
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas       822 Jul 27 22:40 pilotlog.txt
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas    566209 Jul 27 22:40 log.45743349._054723.job.log.1
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas       357 Jul 27 22:40 output.list
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas       620 Jul 27 22:40 runtime_log
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas    890880 Jul 27 22:40 result.tar.gz
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 22:40 runtime_log.err
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas       653 Jul 27 22:40 0EPLDmyIM07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6FWLDmSxIuzm.diag
[2025-07-27 22:40:56] -rw-r--r--. 1 boincer umatlas     22402 Jul 27 22:40 stderr.txt
[2025-07-27 22:40:56] HITS file was successfully produced:
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas 205137921 Jul 27 22:38 shared/HITS.pool.root.1
[2025-07-27 22:40:56]  *** Contents of shared directory: ***
[2025-07-27 22:40:56] total 342816
[2025-07-27 22:40:56] -rw-r--r--. 2 boincer umatlas 144438825 Jul 27 20:58 ATLAS.root_0
[2025-07-27 22:40:56] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:58 start_atlas.sh
[2025-07-27 22:40:56] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 20:58 input.tar.gz
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas 205137921 Jul 27 22:38 HITS.pool.root.1
[2025-07-27 22:40:56] -rw-------. 1 boincer umatlas    890880 Jul 27 22:40 result.tar.gz
22:40:58 (623536): run_atlas exited; CPU time 36836.881607
22:40:58 (623536): called boinc_finish(0)

</stderr_txt>
]]>

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