Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:51:00 (26578): wrapper (7.7.26015): starting
20:51:00 (26578): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 20:51:00] Arguments: --nthreads 12
[2025-07-27 20:51:00] Threads: 12
[2025-07-27 20:51:00] Checking for CVMFS
[2025-07-27 20:51:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:51:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:51:01] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:51:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:51:01] 2.11.2.0 2924 112698 97616 148829 3 59 15204825 20275200 1 130560 0 40460876 99.972 10285766 11290 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 20:51:01] CVMFS is ok
[2025-07-27 20:51:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:51:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:51:01] Further information can be found at the LHC@home message board.
[2025-07-27 20:51:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:51:01] Checking for apptainer binary...
[2025-07-27 20:51:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:51:01] Running /usr/bin/apptainer --version
[2025-07-27 20:51:01] apptainer version 1.3.2-1.el7
[2025-07-27 20:51:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:51:02] c-205-28.aglt2.org
[2025-07-27 20:51:02] apptainer works
[2025-07-27 20:51:02] Set ATHENA_PROC_NUMBER=12
[2025-07-27 20:51:02] Set ATHENA_CORE_NUMBER=12
[2025-07-27 20:51:02] Starting ATLAS job with PandaID=6747626548
[2025-07-27 20:51:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:11:26]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:11:26]  protocol_id=None
[2025-07-27 22:11:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 22:11:26]  replicas=None
[2025-07-27 22:11:26]  scope=mc23_13p6TeV
[2025-07-27 22:11:26]  status=None
[2025-07-27 22:11:26]  status_code=0
[2025-07-27 22:11:26]  storage_token=
[2025-07-27 22:11:26]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747626548/log.45743349._054609.job.log.tgz.1
[2025-07-27 22:11:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/f4/log.45743349._054609.job.log.tgz.1
[2025-07-27 22:11:26]  workdir=None
[2025-07-27 22:11:26] ]
[2025-07-27 22:11:26] 2025-07-28 02:10:46,212 | INFO     | transferring file log.45743349._054609.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747626548/log.45743349._054609.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:11:26] 2025-07-28 02:10:46,213 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747626548/log.45743349._054609.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._054609.job
[2025-07-27 22:11:26] 2025-07-28 02:10:46,236 | INFO     | adding to output.list: log.45743349._054609.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/f4/log.45743349._054609.job.log.tg
[2025-07-27 22:11:26] 2025-07-28 02:10:46,237 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:11:26] 2025-07-28 02:10:46,237 | INFO     | summary of transferred files:
[2025-07-27 22:11:26] 2025-07-28 02:10:46,237 | INFO     |  -- lfn=log.45743349._054609.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:11:26] 2025-07-28 02:10:46,237 | INFO     | stage-out finished correctly
[2025-07-27 22:11:26] 2025-07-28 02:10:46,322 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:11:26] 2025-07-28 02:10:48,250 | INFO     | job 6747626548 has state=finished
[2025-07-27 22:11:26] 2025-07-28 02:10:48,250 | INFO     | preparing for final server update for job 6747626548 in state='finished'
[2025-07-27 22:11:26] 2025-07-28 02:10:48,313 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 22:11:26] 2025-07-28 02:10:48,313 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:11:26] 2025-07-28 02:10:48,314 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:11:26] 2025-07-28 02:10:48,314 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:11:26] 2025-07-28 02:10:48,314 | INFO     | job 6747626548 has finished - writing final server update
[2025-07-27 22:11:26] 2025-07-28 02:10:48,314 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:11:26] 2025-07-28 02:10:48,315 | INFO     | executing command: lscpu
[2025-07-27 22:11:26] 2025-07-28 02:10:48,340 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:11:26] 2025-07-28 02:10:50,360 | WARNING  | process 5315 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 22:11:26] 2025-07-28 02:10:50,360 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747626548/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:11:26] 2025-07-28 02:10:50,450 | INFO     | number of running child processes to parent process 5315: 1
[2025-07-27 22:11:26] 2025-07-28 02:10:50,450 | INFO     | maximum number of monitored processes: 6
[2025-07-27 22:11:26] 2025-07-28 02:10:52,953 | INFO     | monitor loop #358: job 0:6747626548 is in state 'finished'
[2025-07-27 22:11:26] 2025-07-28 02:10:52,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:11:26] 2025-07-28 02:10:53,246 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 22:11:26] 2025-07-28 02:10:53,250 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-27 22:11:26] 2025-07-28 02:10:53,252 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747626548/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:11:26] 2025-07-28 02:10:53,253 | INFO     | extracted standard info from prmon json
[2025-07-27 22:11:26] 2025-07-28 02:10:53,253 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:11:26] 2025-07-28 02:10:53,253 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:11:26] 2025-07-28 02:10:53,254 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:11:26] 2025-07-28 02:10:53,254 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:11:26] 2025-07-28 02:10:53,255 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:11:26] 2025-07-28 02:10:53,255 | INFO     | sum of square deviations: 110960220.0
[2025-07-27 22:11:26] 2025-07-28 02:10:53,256 | INFO     | sum of deviations: -6945073747.999999
[2025-07-27 22:11:26] 2025-07-28 02:10:53,256 | INFO     | mean x: 1753666348.0
[2025-07-27 22:11:26] 2025-07-28 02:10:53,256 | INFO     | mean y: 2761056.8873239434
[2025-07-27 22:11:26] 2025-07-28 02:10:53,256 | INFO     | -- intersect: 109765900641.91907
[2025-07-27 22:11:26] 2025-07-28 02:10:53,256 | INFO     | intersect: 109765900641.91907
[2025-07-27 22:11:26] 2025-07-28 02:10:53,256 | INFO     | chi2: 0.09156801709831483
[2025-07-27 22:11:26] 2025-07-28 02:10:53,257 | INFO     | -- intersect: 109765900641.91907
[2025-07-27 22:11:26] 2025-07-28 02:10:53,257 | INFO     | current memory leak: -62.59 B/s (using 71 data points, chi2=0.09)
[2025-07-27 22:11:26] 2025-07-28 02:10:53,257 | INFO     | could have reported an average CPU frequency of 2047 MHz (6 samples)
[2025-07-27 22:11:26] 2025-07-28 02:10:53,257 | INFO     | ..............................
[2025-07-27 22:11:26] 2025-07-28 02:10:53,257 | INFO     | . Timing measurements:
[2025-07-27 22:11:26] 2025-07-28 02:10:53,257 | INFO     | . get job = 0 s
[2025-07-27 22:11:26] 2025-07-28 02:10:53,258 | INFO     | . initial setup = 2 s
[2025-07-27 22:11:26] 2025-07-28 02:10:53,258 | INFO     | . payload setup = 10 s
[2025-07-27 22:11:26] 2025-07-28 02:10:53,258 | INFO     | . stage-in = 0 s
[2025-07-27 22:11:26] 2025-07-28 02:10:53,258 | INFO     | . payload execution = 4737 s
[2025-07-27 22:11:26] 2025-07-28 02:10:53,258 | INFO     | . stage-out = 0 s
[2025-07-27 22:11:26] 2025-07-28 02:10:53,258 | INFO     | . log creation = 0 s
[2025-07-27 22:11:26] 2025-07-28 02:10:53,258 | INFO     | ..............................
[2025-07-27 22:11:26] 2025-07-28 02:10:53,342 | INFO     | 
[2025-07-27 22:11:26] 2025-07-28 02:10:53,342 | INFO     | job summary report
[2025-07-27 22:11:26] 2025-07-28 02:10:53,342 | INFO     | --------------------------------------------------
[2025-07-27 22:11:26] 2025-07-28 02:10:53,342 | INFO     | PanDA job id: 6747626548
[2025-07-27 22:11:26] 2025-07-28 02:10:53,342 | INFO     | task id: 45743349
[2025-07-27 22:11:26] 2025-07-28 02:10:53,343 | INFO     | errors: (none)
[2025-07-27 22:11:26] 2025-07-28 02:10:53,343 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:11:26] 2025-07-28 02:10:53,343 | INFO     | pilot state: finished 
[2025-07-27 22:11:26] 2025-07-28 02:10:53,343 | INFO     | transexitcode: 0
[2025-07-27 22:11:26] 2025-07-28 02:10:53,343 | INFO     | exeerrorcode: 0
[2025-07-27 22:11:26] 2025-07-28 02:10:53,343 | INFO     | exeerrordiag: 
[2025-07-27 22:11:26] 2025-07-28 02:10:53,343 | INFO     | exitcode: 0
[2025-07-27 22:11:26] 2025-07-28 02:10:53,344 | INFO     | exitmsg: OK
[2025-07-27 22:11:26] 2025-07-28 02:10:53,344 | INFO     | cpuconsumptiontime: 50949 s
[2025-07-27 22:11:26] 2025-07-28 02:10:53,344 | INFO     | nevents: 400
[2025-07-27 22:11:26] 2025-07-28 02:10:53,344 | INFO     | neventsw: 0
[2025-07-27 22:11:26] 2025-07-28 02:10:53,344 | INFO     | pid: 5315
[2025-07-27 22:11:26] 2025-07-28 02:10:53,344 | INFO     | pgrp: 5315
[2025-07-27 22:11:26] 2025-07-28 02:10:53,345 | INFO     | corecount: 12
[2025-07-27 22:11:26] 2025-07-28 02:10:53,345 | INFO     | event service: False
[2025-07-27 22:11:26] 2025-07-28 02:10:53,345 | INFO     | sizes: {0: 2397304, 1: 2397503, 5: 2397765, 11: 2397821, 4751: 2424010, 4753: 2433008, 4754: 2433192, 4760: 2433386}
[2025-07-27 22:11:26] 2025-07-28 02:10:53,345 | INFO     | --------------------------------------------------
[2025-07-27 22:11:26] 2025-07-28 02:10:53,345 | INFO     | 
[2025-07-27 22:11:26] 2025-07-28 02:10:53,345 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:11:26] 2025-07-28 02:10:53,369 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,369 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,369 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,369 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,369 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,370 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,370 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,370 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,370 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,370 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,370 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,371 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,371 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,371 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,371 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,371 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,372 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,372 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:11:26] 2025-07-28 02:10:53,372 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,372 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:11:26] 2025-07-28 02:10:53,372 | INFO     | job 6747626548 has completed (purged errors)
[2025-07-27 22:11:26] 2025-07-28 02:10:53,373 | INFO     | overall cleanup function is called
[2025-07-27 22:11:26] 2025-07-28 02:10:54,380 | INFO     | --- collectZombieJob: --- 10, [5315]
[2025-07-27 22:11:26] 2025-07-28 02:10:54,381 | INFO     | zombie collector waiting for pid 5315
[2025-07-27 22:11:26] 2025-07-28 02:10:54,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:11:26] 2025-07-28 02:10:54,381 | INFO     | collected zombie processes
[2025-07-27 22:11:26] 2025-07-28 02:10:54,381 | INFO     | will attempt to kill all subprocesses of pid=5315
[2025-07-27 22:11:26] 2025-07-28 02:10:54,472 | INFO     | process IDs to be killed: [5315] (in reverse order)
[2025-07-27 22:11:26] 2025-07-28 02:10:54,523 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:11:26] 2025-07-28 02:10:54,524 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:11:26] 2025-07-28 02:10:54,528 | INFO     | did not find any defunct processes belonging to 5315
[2025-07-27 22:11:26] 2025-07-28 02:10:54,531 | INFO     | did not find any defunct processes belonging to 5315
[2025-07-27 22:11:26] 2025-07-28 02:10:54,531 | INFO     | ready for new job
[2025-07-27 22:11:26] 2025-07-28 02:10:54,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:11:26] 2025-07-28 02:10:54,533 | INFO     | ***************************************
[2025-07-27 22:11:26] 2025-07-28 02:10:54,533 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:11:26] 2025-07-28 02:10:54,533 | INFO     | ***************************************
[2025-07-27 22:11:26] 2025-07-28 02:10:54,533 | INFO     | 
[2025-07-27 22:11:26] 2025-07-28 02:10:54,534 | INFO     | architecture information:
[2025-07-27 22:11:26] 2025-07-28 02:10:54,534 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:11:26] 2025-07-28 02:10:54,547 | INFO     | cat /etc/os-release:
[2025-07-27 22:11:26] NAME="CentOS Linux"
[2025-07-27 22:11:26] VERSION="7 (Core)"
[2025-07-27 22:11:26] ID="centos"
[2025-07-27 22:11:26] ID_LIKE="rhel fedora"
[2025-07-27 22:11:26] VERSION_ID="7"
[2025-07-27 22:11:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:11:26] ANSI_COLOR="0;31"
[2025-07-27 22:11:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:11:26] HOME_URL="https://www.centos.org/"
[2025-07-27 22:11:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:11:26] 
[2025-07-27 22:11:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:11:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:11:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:11:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:11:26] 
[2025-07-27 22:11:26] 2025-07-28 02:10:54,548 | INFO     | ***************************************
[2025-07-27 22:11:26] 2025-07-28 02:10:55,051 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:11:26] 2025-07-28 02:10:55,067 | INFO     | sufficient remaining disk space (29518462976 B)
[2025-07-27 22:11:26] 2025-07-28 02:10:55,068 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:11:26] 2025-07-28 02:10:55,068 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:11:26] 2025-07-28 02:10:55,068 | INFO     | update_server=False
[2025-07-27 22:11:26] 2025-07-28 02:10:55,068 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:11:26] 2025-07-28 02:10:55,069 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:11:26] 2025-07-28 02:10:55,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:11:26] 2025-07-28 02:10:55,457 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 22:11:26] 2025-07-28 02:10:55,457 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 22:11:26] 2025-07-28 02:10:55,457 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:11:26] 2025-07-28 02:10:55,457 | INFO     | will abort loop
[2025-07-27 22:11:26] 2025-07-28 02:10:55,552 | INFO     | all job control threads have been joined
[2025-07-27 22:11:26] 2025-07-28 02:10:55,612 | INFO     | all data control threads have been joined
[2025-07-27 22:11:26] 2025-07-28 02:10:56,021 | INFO     | all payload control threads have been joined
[2025-07-27 22:11:26] 2025-07-28 02:10:56,074 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:56,075 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:56,463 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:56,486 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:56,557 | INFO     | [job] control thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:56,618 | INFO     | [data] control thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:56,668 | INFO     | [job] validate thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:56,687 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:56,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:11:26] 2025-07-28 02:10:56,943 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:57,011 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:57,026 | INFO     | [payload] control thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:57,073 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:57,184 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:10:57,516 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:11:00,919 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:11:05,528 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:11:26] 2025-07-28 02:11:06,533 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:11:26] 2025-07-28 02:11:08,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139805553354560)>', '<ExcThread(monitor, started 139804524140288)>']
[2025-07-27 22:11:26] 2025-07-28 02:11:13,207 | INFO     | all workflow threads have been joined
[2025-07-27 22:11:26] 2025-07-28 02:11:13,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:11:26] 2025-07-28 02:11:13,208 | INFO     | traces error code: 0
[2025-07-27 22:11:26] 2025-07-28 02:11:13,208 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:11:26] 2025-07-28 02:11:25,841 | INFO     | PID=30234 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 22:11:26] 2025-07-28 02:11:25,842 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:11:26] 2025-07-28 02:11:25,842 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:11:26] 2025-07-28 02:11:25,842 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:11:26] 2025-07-28 02:11:25,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:11:26] 2025-07-28 02:11:25,843 | INFO     | [monitor] control thread has ended
[2025-07-27 22:11:26] 2025-07-28 02:11:25,927 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:11:26] 2025-07-28 02:11:25,930 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:11:26] 2025-07-28 02:11:25,934 [wrapper] pilotpid: 30234
[2025-07-27 22:11:26] 2025-07-28 02:11:25,938 [wrapper] Pilot exit status: 0
[2025-07-27 22:11:26] 2025-07-28 02:11:25,955 [wrapper] pandaids: 6747626548
[2025-07-27 22:11:26] 2025-07-28 02:11:25,997 [wrapper] cleanup supervisor_pilot 22413 30235
[2025-07-27 22:11:26] 2025-07-28 02:11:26,002 [wrapper] Test setup, not cleaning
[2025-07-27 22:11:26] 2025-07-28 02:11:26,006 [wrapper] apfmon messages muted
[2025-07-27 22:11:26] 2025-07-28 02:11:26,009 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:11:26] 2025-07-28 02:11:26,013 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:11:26]  *** Error codes and diagnostics ***
[2025-07-27 22:11:26]     "exeErrorCode": 0,
[2025-07-27 22:11:26]     "exeErrorDiag": "",
[2025-07-27 22:11:26]     "pilotErrorCode": 0,
[2025-07-27 22:11:26]     "pilotErrorDiag": "",
[2025-07-27 22:11:26]  *** Listing of results directory ***
[2025-07-27 22:11:26] total 349032
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 15:12 pilot3.tar.gz
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 15:27 queuedata.json
[2025-07-27 22:11:26] -rwx------ 1 boincer umatlas     36292 Jul 27 15:28 runpilot2-wrapper.sh
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas       100 Jul 27 20:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:11:26] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 20:51 run_atlas
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas       105 Jul 27 20:51 job.xml
[2025-07-27 22:11:26] -rw-r--r-- 2 boincer umatlas 147474519 Jul 27 20:51 EVNT.45743347._002960.pool.root.1
[2025-07-27 22:11:26] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 20:51 start_atlas.sh
[2025-07-27 22:11:26] drwxrwx--x 2 boincer umatlas      4096 Jul 27 20:51 shared
[2025-07-27 22:11:26] -rw-r--r-- 2 boincer umatlas    542892 Jul 27 20:51 input.tar.gz
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas         0 Jul 27 20:51 boinc_lockfile
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 20:51 pandaJob.out
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas    980125 Jul 27 20:51 agis_schedconf.cvmfs.json
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas   1593052 Jul 27 20:51 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:11:26] drwx------ 4 boincer umatlas      4096 Jul 27 20:51 pilot3
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 22:03 init_data.xml
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas 204420731 Jul 27 22:10 HITS.45743349._054609.pool.root.1
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas      1063 Jul 27 22:10 memory_monitor_summary.json
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas       529 Jul 27 22:10 boinc_task_state.xml
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas    362086 Jul 27 22:10 log.45743349._054609.job.log.tgz.1
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas      7856 Jul 27 22:10 heartbeat.json
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas        27 Jul 27 22:11 wrapper_checkpoint.txt
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 22:11 boinc_mmap_file
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas        95 Jul 27 22:11 pilot_heartbeat.json
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas       745 Jul 27 22:11 pilotlog.txt
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas    456992 Jul 27 22:11 log.45743349._054609.job.log.1
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas       357 Jul 27 22:11 output.list
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas       620 Jul 27 22:11 runtime_log
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas    839680 Jul 27 22:11 result.tar.gz
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 22:11 runtime_log.err
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas       659 Jul 27 22:11 j8DLDmvDM07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiEWLDmGMb8en.diag
[2025-07-27 22:11:26] -rw-r--r-- 1 boincer umatlas     21795 Jul 27 22:11 stderr.txt
[2025-07-27 22:11:26] HITS file was successfully produced:
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas 204420731 Jul 27 22:10 shared/HITS.pool.root.1
[2025-07-27 22:11:26]  *** Contents of shared directory: ***
[2025-07-27 22:11:26] total 345024
[2025-07-27 22:11:26] -rw-r--r-- 2 boincer umatlas 147474519 Jul 27 20:51 ATLAS.root_0
[2025-07-27 22:11:26] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 20:51 start_atlas.sh
[2025-07-27 22:11:26] -rw-r--r-- 2 boincer umatlas    542892 Jul 27 20:51 input.tar.gz
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas 204420731 Jul 27 22:10 HITS.pool.root.1
[2025-07-27 22:11:26] -rw------- 1 boincer umatlas    839680 Jul 27 22:11 result.tar.gz
22:11:27 (26578): run_atlas exited; CPU time 50913.222050
22:11:27 (26578): called boinc_finish(0)

</stderr_txt>
]]>

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