Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:49:35 (490489): wrapper (7.7.26015): starting
20:49:35 (490489): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 20:49:35] Arguments: --nthreads 8
[2025-07-27 20:49:35] Threads: 8
[2025-07-27 20:49:35] Checking for CVMFS
[2025-07-27 20:49:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:49:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:49:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:49:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:49:36] 2.12.6.0 3144059 19105 345888 148829 2 332 32627457 40960001 10801 16776704 0 61924412 99.754 78020033 28021 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 20:49:36] CVMFS is ok
[2025-07-27 20:49:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:49:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:49:36] Further information can be found at the LHC@home message board.
[2025-07-27 20:49:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:49:36] Checking for apptainer binary...
[2025-07-27 20:49:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:49:36] Running /usr/bin/apptainer --version
[2025-07-27 20:49:36] apptainer version 1.4.1-1.el9
[2025-07-27 20:49:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:49:36] c7-11-15.aglt2.org
[2025-07-27 20:49:36] apptainer works
[2025-07-27 20:49:36] Set ATHENA_PROC_NUMBER=8
[2025-07-27 20:49:36] Set ATHENA_CORE_NUMBER=8
[2025-07-27 20:49:36] Starting ATLAS job with PandaID=6747626603
[2025-07-27 20:49:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:18:29]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:18:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 22:18:29]  replicas=None
[2025-07-27 22:18:29]  scope=mc23_13p6TeV
[2025-07-27 22:18:29]  status=None
[2025-07-27 22:18:29]  status_code=0
[2025-07-27 22:18:29]  storage_token=
[2025-07-27 22:18:29]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747626603/log.45743349._054664.job.log.tgz.1
[2025-07-27 22:18:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/34/66/log.45743349._054664.job.log.tgz.1
[2025-07-27 22:18:29]  workdir=None
[2025-07-27 22:18:29] ]
[2025-07-27 22:18:29] 2025-07-28 02:17:49,422 | INFO     | transferring file log.45743349._054664.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747626603/log.45743349._054664.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:18:29] 2025-07-28 02:17:49,422 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747626603/log.45743349._054664.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._054664.job
[2025-07-27 22:18:29] 2025-07-28 02:17:49,440 | INFO     | adding to output.list: log.45743349._054664.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/34/66/log.45743349._054664.job.log.tg
[2025-07-27 22:18:29] 2025-07-28 02:17:49,440 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:18:29] 2025-07-28 02:17:49,440 | INFO     | summary of transferred files:
[2025-07-27 22:18:29] 2025-07-28 02:17:49,440 | INFO     |  -- lfn=log.45743349._054664.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:18:29] 2025-07-28 02:17:49,440 | INFO     | stage-out finished correctly
[2025-07-27 22:18:29] 2025-07-28 02:17:49,500 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:18:29] 2025-07-28 02:17:49,931 | INFO     | monitor loop #390: job 0:6747626603 is in state 'finished'
[2025-07-27 22:18:29] 2025-07-28 02:17:49,931 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:18:29] 2025-07-28 02:17:51,692 | INFO     | job 6747626603 has state=finished
[2025-07-27 22:18:29] 2025-07-28 02:17:51,692 | INFO     | preparing for final server update for job 6747626603 in state='finished'
[2025-07-27 22:18:29] 2025-07-28 02:17:51,692 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:18:29] 2025-07-28 02:17:51,692 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:18:29] 2025-07-28 02:17:51,692 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:18:29] 2025-07-28 02:17:51,692 | INFO     | job 6747626603 has finished - writing final server update
[2025-07-27 22:18:29] 2025-07-28 02:17:51,693 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:18:29] 2025-07-28 02:17:51,694 | INFO     | executing command: lscpu
[2025-07-27 22:18:29] 2025-07-28 02:17:51,748 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:18:29] 2025-07-28 02:17:52,434 | INFO     | monitor loop #391: job 0:6747626603 is in state 'finished'
[2025-07-27 22:18:29] 2025-07-28 02:17:52,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:18:29] 2025-07-28 02:17:54,937 | INFO     | monitor loop #392: job 0:6747626603 is in state 'finished'
[2025-07-27 22:18:29] 2025-07-28 02:17:54,937 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:18:29] 2025-07-28 02:17:56,120 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 22:18:29] 2025-07-28 02:17:56,124 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3257.5572968750007
[2025-07-27 22:18:29] 2025-07-28 02:17:56,132 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747626603/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:18:29] 2025-07-28 02:17:56,133 | INFO     | extracted standard info from prmon json
[2025-07-27 22:18:29] 2025-07-28 02:17:56,133 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:18:29] 2025-07-28 02:17:56,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:18:29] 2025-07-28 02:17:56,133 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:18:29] 2025-07-28 02:17:56,133 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:18:29] 2025-07-28 02:17:56,135 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:18:29] 2025-07-28 02:17:56,135 | INFO     | sum of square deviations: 152858680.0
[2025-07-27 22:18:29] 2025-07-28 02:17:56,135 | INFO     | sum of deviations: -12031050801.0
[2025-07-27 22:18:29] 2025-07-28 02:17:56,135 | INFO     | mean x: 1753666513.0
[2025-07-27 22:18:29] 2025-07-28 02:17:56,135 | INFO     | mean y: 2276362.7974683545
[2025-07-27 22:18:29] 2025-07-28 02:17:56,135 | INFO     | -- intersect: 138028137281.62476
[2025-07-27 22:18:29] 2025-07-28 02:17:56,135 | INFO     | intersect: 138028137281.62476
[2025-07-27 22:18:29] 2025-07-28 02:17:56,135 | INFO     | chi2: 0.15889215082422892
[2025-07-27 22:18:29] 2025-07-28 02:17:56,135 | INFO     | -- intersect: 138028137281.62476
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | current memory leak: -78.71 B/s (using 79 data points, chi2=0.16)
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | could have reported an average CPU frequency of 3268 MHz (6 samples)
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | ..............................
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | . Timing measurements:
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | . get job = 0 s
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | . initial setup = 2 s
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | . payload setup = 11 s
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | . stage-in = 0 s
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | . payload execution = 5245 s
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | . stage-out = 0 s
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | . log creation = 0 s
[2025-07-27 22:18:29] 2025-07-28 02:17:56,136 | INFO     | ..............................
[2025-07-27 22:18:29] 2025-07-28 02:17:56,504 | INFO     | 
[2025-07-27 22:18:29] 2025-07-28 02:17:56,504 | INFO     | job summary report
[2025-07-27 22:18:29] 2025-07-28 02:17:56,504 | INFO     | --------------------------------------------------
[2025-07-27 22:18:29] 2025-07-28 02:17:56,504 | INFO     | PanDA job id: 6747626603
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | task id: 45743349
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | errors: (none)
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | pilot state: finished 
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | transexitcode: 0
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | exeerrorcode: 0
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | exeerrordiag: 
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | exitcode: 0
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | exitmsg: OK
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | cpuconsumptiontime: 37478 s
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | nevents: 400
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | neventsw: 0
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | pid: 504977
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | pgrp: 504977
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | corecount: 8
[2025-07-27 22:18:29] 2025-07-28 02:17:56,505 | INFO     | event service: False
[2025-07-27 22:18:29] 2025-07-28 02:17:56,506 | INFO     | sizes: {0: 2397475, 7: 2397737, 11: 2397765, 5260: 2424240, 5261: 2433238, 5262: 2433294, 5268: 2433616}
[2025-07-27 22:18:29] 2025-07-28 02:17:56,506 | INFO     | --------------------------------------------------
[2025-07-27 22:18:29] 2025-07-28 02:17:56,506 | INFO     | 
[2025-07-27 22:18:29] 2025-07-28 02:17:56,506 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 22:18:29] 2025-07-28 02:17:56,531 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,532 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,533 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,533 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,533 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,533 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:18:29] 2025-07-28 02:17:56,533 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,533 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:18:29] 2025-07-28 02:17:56,533 | INFO     | job 6747626603 has completed (purged errors)
[2025-07-27 22:18:29] 2025-07-28 02:17:56,533 | INFO     | overall cleanup function is called
[2025-07-27 22:18:29] 2025-07-28 02:17:56,940 | INFO     | PID=494056 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 22:18:29] 2025-07-28 02:17:56,940 | INFO     | .. there are 9 such processes running
[2025-07-27 22:18:29] 2025-07-28 02:17:57,541 | INFO     | --- collectZombieJob: --- 10, [504977]
[2025-07-27 22:18:29] 2025-07-28 02:17:57,541 | INFO     | zombie collector waiting for pid 504977
[2025-07-27 22:18:29] 2025-07-28 02:17:57,541 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:18:29] 2025-07-28 02:17:57,542 | INFO     | collected zombie processes
[2025-07-27 22:18:29] 2025-07-28 02:17:57,542 | INFO     | will attempt to kill all subprocesses of pid=504977
[2025-07-27 22:18:29] 2025-07-28 02:17:57,803 | INFO     | process IDs to be killed: [504977] (in reverse order)
[2025-07-27 22:18:29] 2025-07-28 02:17:57,906 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:18:29] 2025-07-28 02:17:57,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:18:29] 2025-07-28 02:17:57,917 | INFO     | did not find any defunct processes belonging to 504977
[2025-07-27 22:18:29] 2025-07-28 02:17:57,926 | INFO     | did not find any defunct processes belonging to 504977
[2025-07-27 22:18:29] 2025-07-28 02:17:57,926 | INFO     | ready for new job
[2025-07-27 22:18:29] 2025-07-28 02:17:57,926 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:18:29] 2025-07-28 02:17:57,928 | INFO     | ***************************************
[2025-07-27 22:18:29] 2025-07-28 02:17:57,928 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:18:29] 2025-07-28 02:17:57,928 | INFO     | ***************************************
[2025-07-27 22:18:29] 2025-07-28 02:17:57,928 | INFO     | 
[2025-07-27 22:18:29] 2025-07-28 02:17:57,944 | INFO     | architecture information:
[2025-07-27 22:18:29] 2025-07-28 02:17:57,944 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:18:29] 2025-07-28 02:17:57,960 | INFO     | cat /etc/os-release:
[2025-07-27 22:18:29] NAME="CentOS Linux"
[2025-07-27 22:18:29] VERSION="7 (Core)"
[2025-07-27 22:18:29] ID="centos"
[2025-07-27 22:18:29] ID_LIKE="rhel fedora"
[2025-07-27 22:18:29] VERSION_ID="7"
[2025-07-27 22:18:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:18:29] ANSI_COLOR="0;31"
[2025-07-27 22:18:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:18:29] HOME_URL="https://www.centos.org/"
[2025-07-27 22:18:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:18:29] 
[2025-07-27 22:18:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:18:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:18:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:18:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:18:29] 
[2025-07-27 22:18:29] 2025-07-28 02:17:57,961 | INFO     | ***************************************
[2025-07-27 22:18:29] 2025-07-28 02:17:58,463 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 22:18:29] 2025-07-28 02:17:58,481 | INFO     | sufficient remaining disk space (86153101312 B)
[2025-07-27 22:18:29] 2025-07-28 02:17:58,482 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:18:29] 2025-07-28 02:17:58,482 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:18:29] 2025-07-28 02:17:58,482 | INFO     | update_server=False
[2025-07-27 22:18:29] 2025-07-28 02:17:58,482 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:18:29] 2025-07-28 02:17:58,482 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:18:29] 2025-07-28 02:17:58,483 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:18:29] 2025-07-28 02:17:58,483 | INFO     | aborting loop
[2025-07-27 22:18:29] 2025-07-28 02:17:58,988 | INFO     | all job control threads have been joined
[2025-07-27 22:18:29] 2025-07-28 02:17:58,996 | INFO     | all payload control threads have been joined
[2025-07-27 22:18:29] 2025-07-28 02:17:59,351 | INFO     | all data control threads have been joined
[2025-07-27 22:18:29] 2025-07-28 02:17:59,487 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:17:59,488 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:17:59,898 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:17:59,994 | INFO     | [job] control thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:00,001 | INFO     | [payload] control thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:00,072 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:18:29] 2025-07-28 02:18:00,231 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:00,356 | INFO     | [data] control thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:00,488 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:00,534 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:00,585 | INFO     | [job] validate thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:00,669 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:00,686 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:00,789 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:01,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:18:29] 2025-07-28 02:18:02,219 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:04,076 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:09,176 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:18:29] 2025-07-28 02:18:10,180 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:18:29] 2025-07-28 02:18:10,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140255337871168)>', '<ExcThread(monitor, started 140254707185408)>']
[2025-07-27 22:18:29] 2025-07-28 02:18:15,636 | INFO     | all workflow threads have been joined
[2025-07-27 22:18:29] 2025-07-28 02:18:15,636 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:18:29] 2025-07-28 02:18:15,636 | INFO     | traces error code: 0
[2025-07-27 22:18:29] 2025-07-28 02:18:15,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:18:29] 2025-07-28 02:18:29,412 | INFO     | PID=494056 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 22:18:29] 2025-07-28 02:18:29,413 | INFO     | .. there are 9 such processes running
[2025-07-27 22:18:29] 2025-07-28 02:18:29,413 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:18:29] 2025-07-28 02:18:29,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:18:29] 2025-07-28 02:18:29,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:18:29] 2025-07-28 02:18:29,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:18:29] 2025-07-28 02:18:29,414 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 22:18:29] 2025-07-28 02:18:29,414 | INFO     | [monitor] control thread has ended
[2025-07-27 22:18:29] 2025-07-28 02:18:29,528 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:18:29] 2025-07-28 02:18:29,534 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:18:29] 2025-07-28 02:18:29,538 [wrapper] pilotpid: 494056
[2025-07-27 22:18:29] 2025-07-28 02:18:29,542 [wrapper] Pilot exit status: 0
[2025-07-27 22:18:29] 2025-07-28 02:18:29,557 [wrapper] pandaids: 6747626603
[2025-07-27 22:18:29] 2025-07-28 02:18:29,643 [wrapper] cleanup supervisor_pilot  867130 494057
[2025-07-27 22:18:29] 2025-07-28 02:18:29,647 [wrapper] Test setup, not cleaning
[2025-07-27 22:18:29] 2025-07-28 02:18:29,649 [wrapper] apfmon messages muted
[2025-07-27 22:18:29] 2025-07-28 02:18:29,652 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:18:29] 2025-07-28 02:18:29,655 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:18:29]  *** Error codes and diagnostics ***
[2025-07-27 22:18:29]     "exeErrorCode": 0,
[2025-07-27 22:18:29]     "exeErrorDiag": "",
[2025-07-27 22:18:29]     "pilotErrorCode": 0,
[2025-07-27 22:18:29]     "pilotErrorDiag": "",
[2025-07-27 22:18:29]  *** Listing of results directory ***
[2025-07-27 22:18:29] total 350456
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 15:12 pilot3.tar.gz
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 15:29 queuedata.json
[2025-07-27 22:18:29] -rwx------. 1 boincer umatlas     36292 Jul 27 15:29 runpilot2-wrapper.sh
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:18:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:49 run_atlas
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:49 job.xml
[2025-07-27 22:18:29] -rw-r--r--. 2 boincer umatlas 144444775 Jul 27 20:49 EVNT.45743347._002964.pool.root.1
[2025-07-27 22:18:29] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:49 shared
[2025-07-27 22:18:29] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 20:49 input.tar.gz
[2025-07-27 22:18:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:49 start_atlas.sh
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:49 boinc_lockfile
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 20:49 pandaJob.out
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas    980125 Jul 27 20:49 agis_schedconf.cvmfs.json
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:49 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:18:29] drwx------. 4 boincer umatlas      4096 Jul 27 20:49 pilot3
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas      6896 Jul 27 22:10 init_data.xml
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas 208920448 Jul 27 22:17 HITS.45743349._054664.pool.root.1
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas       529 Jul 27 22:17 boinc_task_state.xml
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas        95 Jul 27 22:17 pilot_heartbeat.json
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas      1030 Jul 27 22:17 memory_monitor_summary.json
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas    301968 Jul 27 22:17 log.45743349._054664.job.log.tgz.1
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas      7775 Jul 27 22:17 heartbeat.json
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas        27 Jul 27 22:18 wrapper_checkpoint.txt
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 22:18 boinc_mmap_file
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas       891 Jul 27 22:18 pilotlog.txt
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas    513441 Jul 27 22:18 log.45743349._054664.job.log.1
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas       357 Jul 27 22:18 output.list
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas       620 Jul 27 22:18 runtime_log
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas    829440 Jul 27 22:18 result.tar.gz
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 22:18 runtime_log.err
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas       653 Jul 27 22:18 iNaKDm2EM07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWFWLDmPRtdln.diag
[2025-07-27 22:18:29] -rw-r--r--. 1 boincer umatlas     21926 Jul 27 22:18 stderr.txt
[2025-07-27 22:18:29] HITS file was successfully produced:
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas 208920448 Jul 27 22:17 shared/HITS.pool.root.1
[2025-07-27 22:18:29]  *** Contents of shared directory: ***
[2025-07-27 22:18:29] total 346452
[2025-07-27 22:18:29] -rw-r--r--. 2 boincer umatlas 144444775 Jul 27 20:49 ATLAS.root_0
[2025-07-27 22:18:29] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 20:49 input.tar.gz
[2025-07-27 22:18:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:49 start_atlas.sh
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas 208920448 Jul 27 22:17 HITS.pool.root.1
[2025-07-27 22:18:29] -rw-------. 1 boincer umatlas    829440 Jul 27 22:18 result.tar.gz
22:18:31 (490489): run_atlas exited; CPU time 37485.247192
22:18:31 (490489): called boinc_finish(0)

</stderr_txt>
]]>

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