Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:43:52 (1475575): wrapper (7.7.26015): starting
20:43:52 (1475575): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 20:43:52] Arguments: --nthreads 8
[2025-07-27 20:43:52] Threads: 8
[2025-07-27 20:43:52] Checking for CVMFS
[2025-07-27 20:43:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:43:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:43:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:43:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:43:52] 2.13.1.0 375772 15151 269624 148829 3 188 35698598 40960000 9243 16776704 0 80893357 99.777 69991846 40641 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 20:43:52] CVMFS is ok
[2025-07-27 20:43:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:43:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:43:52] Further information can be found at the LHC@home message board.
[2025-07-27 20:43:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:43:52] Checking for apptainer binary...
[2025-07-27 20:43:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:43:52] Running /usr/bin/apptainer --version
[2025-07-27 20:43:52] apptainer version 1.4.1-1.el9
[2025-07-27 20:43:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:43:52] c-212-1.aglt2.org
[2025-07-27 20:43:52] apptainer works
[2025-07-27 20:43:52] Set ATHENA_PROC_NUMBER=8
[2025-07-27 20:43:52] Set ATHENA_CORE_NUMBER=8
[2025-07-27 20:43:52] Starting ATLAS job with PandaID=6747626697
[2025-07-27 20:43:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:04:17]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:04:17]  workdir=None
[2025-07-27 22:04:17] ]
[2025-07-27 22:04:17] 2025-07-28 02:03:36,169 | INFO     | transferring file log.45743349._054758.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6747626697/log.45743349._054758.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:04:17] 2025-07-28 02:03:36,169 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6747626697/log.45743349._054758.job.log.tgz.1 /tmp/boinchome/slots/8/log.45743349._054758.job
[2025-07-27 22:04:17] 2025-07-28 02:03:36,190 | INFO     | adding to output.list: log.45743349._054758.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/3d/log.45743349._054758.job.log.tg
[2025-07-27 22:04:17] 2025-07-28 02:03:36,191 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:04:17] 2025-07-28 02:03:36,191 | INFO     | summary of transferred files:
[2025-07-27 22:04:17] 2025-07-28 02:03:36,191 | INFO     |  -- lfn=log.45743349._054758.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:04:17] 2025-07-28 02:03:36,192 | INFO     | stage-out finished correctly
[2025-07-27 22:04:17] 2025-07-28 02:03:37,664 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:04:17] 2025-07-28 02:03:39,709 | INFO     | job 6747626697 has state=finished
[2025-07-27 22:04:17] 2025-07-28 02:03:39,709 | INFO     | preparing for final server update for job 6747626697 in state='finished'
[2025-07-27 22:04:17] 2025-07-28 02:03:39,710 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:04:17] 2025-07-28 02:03:39,710 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:04:17] 2025-07-28 02:03:39,711 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:04:17] 2025-07-28 02:03:39,711 | INFO     | job 6747626697 has finished - writing final server update
[2025-07-27 22:04:17] 2025-07-28 02:03:39,711 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:04:17] 2025-07-28 02:03:39,712 | INFO     | executing command: lscpu
[2025-07-27 22:04:17] 2025-07-28 02:03:39,779 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:04:17] 2025-07-28 02:03:40,124 | WARNING  | process 1486127 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 22:04:17] 2025-07-28 02:03:40,124 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6747626697/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:04:17] 2025-07-28 02:03:40,125 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6747626697/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:04:17] 2025-07-28 02:03:40,126 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3138502 B
[2025-07-27 22:04:17] 2025-07-28 02:03:40,126 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15777 B
[2025-07-27 22:04:17] 2025-07-28 02:03:40,126 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-07-27 22:04:17] 2025-07-28 02:03:43,697 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 22:04:17] 2025-07-28 02:03:43,707 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3268.9187916666665
[2025-07-27 22:04:17] 2025-07-28 02:03:43,714 | INFO     | sufficient remaining disk space (124454436864 B)
[2025-07-27 22:04:17] 2025-07-28 02:03:43,715 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 22:04:17] 2025-07-28 02:03:43,717 | INFO     | size of work directory /tmp/boinchome/slots/8/PanDA_Pilot-6747626697: 3437427 B (within 2537553920 B limit)
[2025-07-27 22:04:17] 2025-07-28 02:03:43,717 | INFO     | pfn file=/tmp/boinchome/slots/8/PanDA_Pilot-6747626697/HITS.45743349._054758.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 22:04:17] 2025-07-28 02:03:43,717 | INFO     | total size of present files: 0 B (workdir size: 3437427 B)
[2025-07-27 22:04:17] 2025-07-28 02:03:43,717 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/8/PanDA_Pilot-6747626697/HITS.45743349._054758.pool.root.1 since it does not exist
[2025-07-27 22:04:17] 2025-07-28 02:03:43,728 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6747626697/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:04:17] 2025-07-28 02:03:43,728 | INFO     | extracted standard info from prmon json
[2025-07-27 22:04:17] 2025-07-28 02:03:43,729 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:04:17] 2025-07-28 02:03:43,729 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:04:17] 2025-07-28 02:03:43,729 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:04:17] 2025-07-28 02:03:43,729 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:04:17] 2025-07-28 02:03:43,731 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:04:17] 2025-07-28 02:03:43,731 | INFO     | sum of square deviations: 110960220.0
[2025-07-27 22:04:17] 2025-07-28 02:03:43,732 | INFO     | sum of deviations: -780034694.0000002
[2025-07-27 22:04:17] 2025-07-28 02:03:43,732 | INFO     | mean x: 1753665910.0
[2025-07-27 22:04:17] 2025-07-28 02:03:43,732 | INFO     | mean y: 2529597.7887323946
[2025-07-27 22:04:17] 2025-07-28 02:03:43,732 | INFO     | -- intersect: 12330553564.26142
[2025-07-27 22:04:17] 2025-07-28 02:03:43,732 | INFO     | intersect: 12330553564.26142
[2025-07-27 22:04:17] 2025-07-28 02:03:43,733 | INFO     | chi2: 0.0009216906817180054
[2025-07-27 22:04:17] 2025-07-28 02:03:43,733 | INFO     | -- intersect: 12330553564.26142
[2025-07-27 22:04:17] 2025-07-28 02:03:43,733 | INFO     | current memory leak: -7.03 B/s (using 71 data points, chi2=0.00)
[2025-07-27 22:04:17] 2025-07-28 02:03:43,734 | INFO     | could have reported an average CPU frequency of 3257 MHz (6 samples)
[2025-07-27 22:04:17] 2025-07-28 02:03:43,734 | INFO     | ..............................
[2025-07-27 22:04:17] 2025-07-28 02:03:43,734 | INFO     | . Timing measurements:
[2025-07-27 22:04:17] 2025-07-28 02:03:43,734 | INFO     | . get job = 0 s
[2025-07-27 22:04:17] 2025-07-28 02:03:43,734 | INFO     | . initial setup = 2 s
[2025-07-27 22:04:17] 2025-07-28 02:03:43,735 | INFO     | . payload setup = 6 s
[2025-07-27 22:04:17] 2025-07-28 02:03:43,735 | INFO     | . stage-in = 0 s
[2025-07-27 22:04:17] 2025-07-28 02:03:43,735 | INFO     | . payload execution = 4745 s
[2025-07-27 22:04:17] 2025-07-28 02:03:43,735 | INFO     | . stage-out = 0 s
[2025-07-27 22:04:17] 2025-07-28 02:03:43,735 | INFO     | . log creation = 0 s
[2025-07-27 22:04:17] 2025-07-28 02:03:43,735 | INFO     | ..............................
[2025-07-27 22:04:17] 2025-07-28 02:03:44,086 | INFO     | 
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | job summary report
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | --------------------------------------------------
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | PanDA job id: 6747626697
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | task id: 45743349
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | errors: (none)
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | pilot state: finished 
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | transexitcode: 0
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | exeerrorcode: 0
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | exeerrordiag: 
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | exitcode: 0
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | exitmsg: OK
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | cpuconsumptiontime: 34881 s
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | nevents: 400
[2025-07-27 22:04:17] 2025-07-28 02:03:44,087 | INFO     | neventsw: 0
[2025-07-27 22:04:17] 2025-07-28 02:03:44,088 | INFO     | pid: 1486127
[2025-07-27 22:04:17] 2025-07-28 02:03:44,088 | INFO     | pgrp: 1486127
[2025-07-27 22:04:17] 2025-07-28 02:03:44,088 | INFO     | corecount: 8
[2025-07-27 22:04:17] 2025-07-28 02:03:44,088 | INFO     | event service: False
[2025-07-27 22:04:17] 2025-07-28 02:03:44,088 | INFO     | sizes: {0: 2397303, 1: 2397502, 5: 2397764, 12: 2397820, 4755: 2424048, 4757: 2433046, 4759: 2433230, 4765: 2433452}
[2025-07-27 22:04:17] 2025-07-28 02:03:44,088 | INFO     | --------------------------------------------------
[2025-07-27 22:04:17] 2025-07-28 02:03:44,088 | INFO     | 
[2025-07-27 22:04:17] 2025-07-28 02:03:44,088 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-07-27 22:04:17] 2025-07-28 02:03:44,108 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,109 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,109 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,109 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,109 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,109 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,109 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,110 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,110 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,110 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,110 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,110 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,110 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,110 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,110 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,110 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,111 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,111 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:04:17] 2025-07-28 02:03:44,111 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,111 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:04:17] 2025-07-28 02:03:44,111 | INFO     | job 6747626697 has completed (purged errors)
[2025-07-27 22:04:17] 2025-07-28 02:03:44,111 | INFO     | overall cleanup function is called
[2025-07-27 22:04:17] 2025-07-28 02:03:44,119 | INFO     | number of running child processes to parent process 1486127: 1
[2025-07-27 22:04:17] 2025-07-28 02:03:44,120 | INFO     | maximum number of monitored processes: 6
[2025-07-27 22:04:17] 2025-07-28 02:03:44,120 | INFO     | aborting job monitoring since job object (job id=6747626697) has expired
[2025-07-27 22:04:17] 2025-07-28 02:03:45,120 | INFO     | --- collectZombieJob: --- 10, [1486127]
[2025-07-27 22:04:17] 2025-07-28 02:03:45,120 | INFO     | zombie collector waiting for pid 1486127
[2025-07-27 22:04:17] 2025-07-28 02:03:45,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:04:17] 2025-07-28 02:03:45,120 | INFO     | collected zombie processes
[2025-07-27 22:04:17] 2025-07-28 02:03:45,120 | INFO     | will attempt to kill all subprocesses of pid=1486127
[2025-07-27 22:04:17] 2025-07-28 02:03:45,480 | INFO     | process IDs to be killed: [1486127] (in reverse order)
[2025-07-27 22:04:17] 2025-07-28 02:03:45,568 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:04:17] 2025-07-28 02:03:45,569 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:04:17] 2025-07-28 02:03:45,584 | INFO     | did not find any defunct processes belonging to 1486127
[2025-07-27 22:04:17] 2025-07-28 02:03:45,595 | INFO     | did not find any defunct processes belonging to 1486127
[2025-07-27 22:04:17] 2025-07-28 02:03:45,595 | INFO     | ready for new job
[2025-07-27 22:04:17] 2025-07-28 02:03:45,596 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:04:17] 2025-07-28 02:03:45,597 | INFO     | ***************************************
[2025-07-27 22:04:17] 2025-07-28 02:03:45,599 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:04:17] 2025-07-28 02:03:45,599 | INFO     | ***************************************
[2025-07-27 22:04:17] 2025-07-28 02:03:45,599 | INFO     | 
[2025-07-27 22:04:17] 2025-07-28 02:03:45,604 | INFO     | architecture information:
[2025-07-27 22:04:17] 2025-07-28 02:03:45,604 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:04:17] 2025-07-28 02:03:45,622 | INFO     | cat /etc/os-release:
[2025-07-27 22:04:17] NAME="CentOS Linux"
[2025-07-27 22:04:17] VERSION="7 (Core)"
[2025-07-27 22:04:17] ID="centos"
[2025-07-27 22:04:17] ID_LIKE="rhel fedora"
[2025-07-27 22:04:17] VERSION_ID="7"
[2025-07-27 22:04:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:04:17] ANSI_COLOR="0;31"
[2025-07-27 22:04:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:04:17] HOME_URL="https://www.centos.org/"
[2025-07-27 22:04:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:04:17] 
[2025-07-27 22:04:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:04:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:04:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:04:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:04:17] 
[2025-07-27 22:04:17] 2025-07-28 02:03:45,622 | INFO     | ***************************************
[2025-07-27 22:04:17] 2025-07-28 02:03:46,125 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-07-27 22:04:17] 2025-07-28 02:03:46,149 | INFO     | sufficient remaining disk space (124458631168 B)
[2025-07-27 22:04:17] 2025-07-28 02:03:46,150 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:04:17] 2025-07-28 02:03:46,150 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:04:17] 2025-07-28 02:03:46,150 | INFO     | update_server=False
[2025-07-27 22:04:17] 2025-07-28 02:03:46,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:04:17] 2025-07-28 02:03:46,420 | INFO     | all data control threads have been joined
[2025-07-27 22:04:17] 2025-07-28 02:03:46,622 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 22:04:17] 2025-07-28 02:03:46,623 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 22:04:17] 2025-07-28 02:03:46,623 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:04:17] 2025-07-28 02:03:46,623 | INFO     | will abort loop
[2025-07-27 22:04:17] 2025-07-28 02:03:46,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:04:17] 2025-07-28 02:03:46,839 | INFO     | all payload control threads have been joined
[2025-07-27 22:04:17] 2025-07-28 02:03:47,155 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:47,267 | INFO     | all job control threads have been joined
[2025-07-27 22:04:17] 2025-07-28 02:03:47,426 | INFO     | [data] control thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:47,628 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:47,686 | INFO     | [job] validate thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:47,718 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:47,843 | INFO     | [payload] control thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:47,939 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:48,246 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:48,250 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:04:17] 2025-07-28 02:03:48,273 | INFO     | [job] control thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:48,320 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:48,405 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:48,562 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:48,786 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:48,830 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:04:17] 2025-07-28 02:03:49,835 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:52,258 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:57,136 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:04:17] 2025-07-28 02:03:58,141 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:04:17] 2025-07-28 02:03:59,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140110233614144)>', '<ExcThread(monitor, started 140109601036032)>']
[2025-07-27 22:04:17] 2025-07-28 02:04:04,715 | INFO     | all workflow threads have been joined
[2025-07-27 22:04:17] 2025-07-28 02:04:04,715 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:04:17] 2025-07-28 02:04:04,716 | INFO     | traces error code: 0
[2025-07-27 22:04:17] 2025-07-28 02:04:04,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:04:17] 2025-07-28 02:04:17,273 | INFO     | PID=1479346 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 22:04:17] 2025-07-28 02:04:17,274 | INFO     | .. there are 12 such processes running
[2025-07-27 22:04:17] 2025-07-28 02:04:17,274 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:04:17] 2025-07-28 02:04:17,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:04:17] 2025-07-28 02:04:17,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:04:17] 2025-07-28 02:04:17,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:04:17] 2025-07-28 02:04:17,274 | INFO     | [monitor] control thread has ended
[2025-07-27 22:04:17] 2025-07-28 02:04:17,446 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:04:17] 2025-07-28 02:04:17,449 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:04:17] 2025-07-28 02:04:17,452 [wrapper] pilotpid: 1479346
[2025-07-27 22:04:17] 2025-07-28 02:04:17,454 [wrapper] Pilot exit status: 0
[2025-07-27 22:04:17] 2025-07-28 02:04:17,464 [wrapper] pandaids: 6747626697
[2025-07-27 22:04:17] 2025-07-28 02:04:17,552 [wrapper] cleanup supervisor_pilot 1804290 1479347
[2025-07-27 22:04:17] 2025-07-28 02:04:17,555 [wrapper] Test setup, not cleaning
[2025-07-27 22:04:17] 2025-07-28 02:04:17,558 [wrapper] apfmon messages muted
[2025-07-27 22:04:17] 2025-07-28 02:04:17,561 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:04:17] 2025-07-28 02:04:17,565 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:04:17]  *** Error codes and diagnostics ***
[2025-07-27 22:04:17]     "exeErrorCode": 0,
[2025-07-27 22:04:17]     "exeErrorDiag": "",
[2025-07-27 22:04:17]     "pilotErrorCode": 0,
[2025-07-27 22:04:17]     "pilotErrorDiag": "",
[2025-07-27 22:04:17]  *** Listing of results directory ***
[2025-07-27 22:04:17] total 350732
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 15:12 pilot3.tar.gz
[2025-07-27 22:04:17] -rwx------. 1 boincer umatlas     36292 Jul 27 15:35 runpilot2-wrapper.sh
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 15:35 queuedata.json
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:04:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:43 run_atlas
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:43 job.xml
[2025-07-27 22:04:17] -rw-r--r--. 2 boincer umatlas 148327718 Jul 27 20:43 EVNT.45743347._002970.pool.root.1
[2025-07-27 22:04:17] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:43 start_atlas.sh
[2025-07-27 22:04:17] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:43 shared
[2025-07-27 22:04:17] -rw-r--r--. 2 boincer umatlas    542890 Jul 27 20:43 input.tar.gz
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:43 boinc_lockfile
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 20:43 pandaJob.out
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas    980125 Jul 27 20:44 agis_schedconf.cvmfs.json
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:44 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:04:17] drwx------. 4 boincer umatlas      4096 Jul 27 20:44 pilot3
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas      6946 Jul 27 22:00 init_data.xml
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas 205407940 Jul 27 22:03 HITS.45743349._054758.pool.root.1
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas       529 Jul 27 22:03 boinc_task_state.xml
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas      1026 Jul 27 22:03 memory_monitor_summary.json
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas        95 Jul 27 22:03 pilot_heartbeat.json
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas    301662 Jul 27 22:03 log.45743349._054758.job.log.tgz.1
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas      7764 Jul 27 22:03 heartbeat.json
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas        27 Jul 27 22:04 wrapper_checkpoint.txt
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 22:04 boinc_mmap_file
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas       823 Jul 27 22:04 pilotlog.txt
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas    466882 Jul 27 22:04 log.45743349._054758.job.log.1
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas       357 Jul 27 22:04 output.list
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas       620 Jul 27 22:04 runtime_log
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas    788480 Jul 27 22:04 result.tar.gz
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas       650 Jul 27 22:04 VyLMDmvKM07n9Rq4apOajLDm4fhM0noT9bVof3QYDmD22KDmaFwTEn.diag
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 22:04 runtime_log.err
[2025-07-27 22:04:17] -rw-r--r--. 1 boincer umatlas     22558 Jul 27 22:04 stderr.txt
[2025-07-27 22:04:17] HITS file was successfully produced:
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas 205407940 Jul 27 22:03 shared/HITS.pool.root.1
[2025-07-27 22:04:17]  *** Contents of shared directory: ***
[2025-07-27 22:04:17] total 346776
[2025-07-27 22:04:17] -rw-r--r--. 2 boincer umatlas 148327718 Jul 27 20:43 ATLAS.root_0
[2025-07-27 22:04:17] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:43 start_atlas.sh
[2025-07-27 22:04:17] -rw-r--r--. 2 boincer umatlas    542890 Jul 27 20:43 input.tar.gz
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas 205407940 Jul 27 22:03 HITS.pool.root.1
[2025-07-27 22:04:17] -rw-------. 1 boincer umatlas    788480 Jul 27 22:04 result.tar.gz
22:04:19 (1475575): run_atlas exited; CPU time 35007.859154
22:04:19 (1475575): called boinc_finish(0)

</stderr_txt>
]]>

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